Gene

KWMTBOMO10661  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008256

Annotation

PREDICTED:_ribosome_biogenesis_protein_BOP1_homolog_[Bombyx_mori]

Location

Bomo_Chr18(-):189096-200205      View in EpiBrowser

Full name

Ribosome biogenesis protein BOP1 homolog      

Location in the cell

Nuclear   Reliability : 3.259

CDS

ATGCCTCCTCTAAAAGCTGGGTTAAGTTTGAAAAGAAAAATAGAAACAGAAAATAAGGTTGAATCTAAATATGAACAAGAATCATCTAATACTAAAGGGCTAGAAGAGCTTACTTTGAGTGAATTGAATATAGAAGGTGATTCTACGGATTCCGAGCATGAAGGAAATGAAGAAGGCTCTGATCAGGATCAAGATGAAGTTTTGTTTAAGGACAGTGATGTGTCTTCCCTTGAAGATGAAGATGTTGAATATGCTTCAGATGAATCGTCTGAGTTAACCGATTCAGAGGCTGAAGGTGAATCTGTGAACAGCAATGATAATAACAATGCAGAAAGTGAAGATAGTGACACAGAAAGTGATGCAGAATCTGGCATTGGACACACTCATGGCTCCAGTGGCAGTGAATCTGAAAAACAGACTTTGAAAAATAAACAAAAGAAAAAAATAGCAAAGCAAAAAATTAAAACGAAGAAACCAGATAAAGACTTAAAAGAAAAGTCACAAAATAAAAAAGGAACCACTTCTAAAGGCAGTGTGGATAGACTAGCTGACGTCATTGAGGGATCTTCACAAATGCAACCTGTCGAACAGAAAGATGAATATGAATCGGGTGACACGTCCGATGAGGAGGAGCGTCGTAACACGGTGGGGGATATACCGATGTGGTGGTACAATGAATACCCCCATATTGGTTACGATCTGGATGGACGGAAGATTGTCAAACCACCACAGAGAGATCAAATTGATGAGTTCCTCAAAAAATGTGAAGATCCAGATTTTTGGAGAACAGTACGTGATCCCTCAACAGGACAGGACGTGGTGCTCAGCAAGGAAGACTTGCAGCTCATACAGAGGATCCGGGAGGGCCAAGTACCCAACCCTGACCATGACGAGTACCAGCCGTGGGTGGAGTGGTTCAGCCGGGAGGTGCTGGCGACGCCGCTGCGGGCCTTCCCCGAGCACAAGCGCTCGTTCCTGCCGTCCCGCTCCGAGCAGCTGCAGATCGCCAAGATTGTGCACGCCCTCAAGATGGGCTGGACCAAGACCAGGAAGCAGCTGGCCGCCGAGAGAAGGGACAGACGGGAGAAAAAGTTCTATAACCTGTGGGGCTCCACCGGAGAGGGGGAGGGCCGCGCCCCGCACCGCCCCGTCCCCCCGCCGCGCCGCCCCCCGCCCCCCCACGCCGAGAGCTACAACCCGCCGCCCGAGTACCTGCTGGACGCCAAGGAGATGAAAGAATGGAACAAGCTGAAGGAGACCCCGTGGAAGCGCAAGTACACGTTCCTGCCGACGCGCCACGCCTCGCTGCGGGAGGTGCCCGCTTACCAGCGCTTCGTCCGCGAGCGCTTCCTGCGCTGCCTCGACCTGTACCTGGCGCCCCGGGCCATCAAGATGAGGTTGACGATATCTGCGTCGGAGCTGGTGCCCCGGCTGCCGTCCCCGCGCGAGCTGCAGCCCTTCCCGACGGGCGAGGCGCTGTGCCTGCGCGGCCACGCGGCGCCCGTGCGCTCCGTCGACTTCGAGCCCTCCGGACAGTACATCGTCAGCGGCGGCGACGACGGCGCCGTCAAGATATGGGAGACTAGTACGGGTCGCTGTCTCCGCACAATAGAGCTAGGCGAGCCCGTGAGCCGCGTGCTGTGGAGCCCCGCGCCCGCGCTGTGGCTGGTGGCGGCCGCCGCCGGGAGCCGCCTGCTGCTGCTCAACCCGGGCACGCGCATCGGCCACCACCGCCGCGCCGCGCGCACCGACCTGCTGCTCGACGAGCCGCCCCCGCAGCACGACGTGCAGCCGGACGAGCGCACAGCGTCTGCGGTGAAGTGGGAGCGGGTCACTCCGGAGGACTGGGCCAAAGGGATACGCATTGCGATCACGCACTTTAAGCCCATCGTGCACGTGTCGTGGCACGGGCGCGGCGACTACGTGGCGGCGAGCGTGCGCGCGGAGGGCGGGCGCGCGGTGTGCGTGCACCAGGTGTCGCGGCGCCGCTCGCAGCTGCCGCTGGCGCGCCTGGCGGGGCAGGTGCAGGCGGCGCACTTCCACCCCGCGCGCCCGCTGCTCGCCGTGGCCACGCAGCGCGCCGTGCGCCTCTACGACCTGCTCAAGCAGGAGCTGGTGCGCAAGCTGCGGCCGGGCGCGCAGTGGATTAGCGACTTCGCCTTCCATCCCGCCGGAGACAACATGCTCGTGGCTTCTTACGACCGGAAGTGCATGTGGTTCGACCTGGAGCTGTCCCCGCGGCCCTACCAGACGCTGCGGCTGCACGGCGGGGCGGTGCGCGCGCTGGCCTTCCACCGGCGCTACCCGCTGTTCGCGACGGGCGGCGACGACGCGCACGTGGTGGTGTCGCACGGGATGGTCTACAACGATCTCCTGCAGAACCCGCTGATAGTCCCGCTCAAACAAATCCGCGGCCCAGAAGTCAAGGACGAGCTGTGCGTGCTGGACCTGCGCTTCCACCCCACGCAGCCCTGGCTGCTCGCCGCCGGTGCAGATTCTACTATCAGACTCTACTCTTGA

Protein

MPPLKAGLSLKRKIETENKVESKYEQESSNTKGLEELTLSELNIEGDSTDSEHEGNEEGSDQDQDEVLFKDSDVSSLEDEDVEYASDESSELTDSEAEGESVNSNDNNNAESEDSDTESDAESGIGHTHGSSGSESEKQTLKNKQKKKIAKQKIKTKKPDKDLKEKSQNKKGTTSKGSVDRLADVIEGSSQMQPVEQKDEYESGDTSDEEERRNTVGDIPMWWYNEYPHIGYDLDGRKIVKPPQRDQIDEFLKKCEDPDFWRTVRDPSTGQDVVLSKEDLQLIQRIREGQVPNPDHDEYQPWVEWFSREVLATPLRAFPEHKRSFLPSRSEQLQIAKIVHALKMGWTKTRKQLAAERRDRREKKFYNLWGSTGEGEGRAPHRPVPPPRRPPPPHAESYNPPPEYLLDAKEMKEWNKLKETPWKRKYTFLPTRHASLREVPAYQRFVRERFLRCLDLYLAPRAIKMRLTISASELVPRLPSPRELQPFPTGEALCLRGHAAPVRSVDFEPSGQYIVSGGDDGAVKIWETSTGRCLRTIELGEPVSRVLWSPAPALWLVAAAAGSRLLLLNPGTRIGHHRRAARTDLLLDEPPPQHDVQPDERTASAVKWERVTPEDWAKGIRIAITHFKPIVHVSWHGRGDYVAASVRAEGGRAVCVHQVSRRRSQLPLARLAGQVQAAHFHPARPLLAVATQRAVRLYDLLKQELVRKLRPGAQWISDFAFHPAGDNMLVASYDRKCMWFDLELSPRPYQTLRLHGGAVRALAFHRRYPLFATGGDDAHVVVSHGMVYNDLLQNPLIVPLKQIRGPEVKDELCVLDLRFHPTQPWLLAAGADSTIRLYS

Description

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Similarity

Belongs to the WD repeat BOP1/ERB1 family.

Keywords

Complete proteome   Nucleus   Reference proteome   Repeat   Ribosome biogenesis   rRNA processing   WD repeat  

Feature

chain  Ribosome biogenesis protein BOP1 homolog

Uniprot

A0A0L7LL23   A0A212F2L0   B4J9K1   B4HN85   A0A0J9RF50   A0A0M8ZWS3   + More
B4P528   B3NLK7   Q7K0Y1   A0A1W4VCQ4   W8CBB4   B4KQU8   A0A034VJF0   A0A0M4ELA9   B4LKS9   A0A1I8N5B9   A0A0L0C1I5   A0A0K8VJF2   B4MYI5   A0A3B0J1R4   Q28XF0   B4GIU9   A0A310SHE9   A0A0A1WSA2   A0A1I8Q7T4   B3MHX6   A0A0L7QY49   A0A1A9VIH6   A0A088ANP5   A0A1A9X3W6   A0A1B0G4D6   A0A1A9XJ49   A0A1A9ZNI2   A0A2A3EGG3   A0A232EXB6   A0A1W4XB80   A0A2J7RIH7   A0A195FFU5   A0A067R0T8   E2BI62   A0A195CB56   F4WY53   A0A026WUX7   A0A0J7KVS3   A0A195EGR1   D2A5R4   A0A084WK79   A0A1A9USV2   A0A151I3S4   A0A1Y1LC21   A0A182YEL6   A0A182VFU3   A0A2M4BDV5   A0A182P0N9   A0A182FC81   A0A2M4BE27   A0A182G9M8   W5JM85   A0A151X6R2   A0A2K7P690   A0A2M4BEK1   A0A182GVZ6   A0A2M4AEB7   A0A2M4BFW2   E0VAH5   Q17LZ2   A0A1Q3EX49   A0A182IXM4   A0A1Q3EYN9   A0A1Q3EXB7   A0A2M3ZH60   A0A2M4AFE4   B0WC36   A0A3B0JNL4   A0A1Q3EX42   A0A182SEN2   A0A158NSZ1   A0A182QZU2   A0A182MQ54   A0A182NK53   U5EWE2   A0A336KP54   A0A336MZH9   A0A182WWZ8   A0A182KD43   Q7PTC5   A0A182UDK6   A0A182I2J4   A0A1J1I395   U4UD33   N6UAF1   A0A182WLI9   A0A1L8DRZ8   A0A1B6FAB8   A0A182KQE5   A0A0P6J2Y6   A0A0P6BVL7   A0A1B6I9K5   A0A0P5ICG8  

Pubmed

26227816    22118469    17994087    22936249    10731132    12537572    + More
10731137    12537569    24495485    25348373    25315136    26108605    15632085    25830018    28648823    24845553    20798317    21719571    24508170    30249741    18362917    19820115    24438588    28004739    25244985    26483478    20920257    23761445    20566863    17510324    21347285    12364791    23537049    20966253   

EMBL

JTDY01000709    KOB76137.1    AGBW02010729    OWR47962.1    CH916367    CH480816    + More
CM002911    KMY94688.1    KQ435833    KOX71646.1    CM000158    CH954179    AE013599    AL035311    AY069513    BT003755    GAMC01004976    JAC01580.1    CH933808    GAKP01016740    JAC42212.1    CP012524    ALC42330.1    CH940648    JRES01001012    KNC26150.1    GDHF01013639    JAI38675.1    CH963894    OUUW01000001    SPP74915.1    CM000071    CH479183    KQ761108    OAD58194.1    GBXI01013009    JAD01283.1    CH902619    KQ414695    KOC63532.1    CCAG010007933    KZ288254    PBC30800.1    NNAY01001755    OXU23022.1    NEVH01003500    PNF40633.1    KQ981636    KYN38894.1    KK852796    KDR16383.1    GL448450    EFN84633.1    KQ978023    KYM98037.1    GL888439    EGI60810.1    KK107111    QOIP01000011    EZA58909.1    RLU16547.1    LBMM01002788    KMQ94364.1    KQ978957    KYN27331.1    KQ971345    EFA05408.1    ATLV01024097    KE525349    KFB50623.1    KQ976472    KYM83997.1    GEZM01060247    JAV71163.1    GGFJ01002084    MBW51225.1    GGFJ01002126    MBW51267.1    JXUM01049506    KQ561607    KXJ78016.1    ADMH02001152    ETN63884.1    KQ982476    KYQ56042.1    GGFJ01002345    MBW51486.1    JXUM01019296    JXUM01019297    KQ560538    KXJ81945.1    GGFK01005627    MBW38948.1    GGFJ01002567    MBW51708.1    DS235006    EEB10381.1    CH477209    GFDL01015156    JAV19889.1    GFDL01014624    JAV20421.1    GFDL01015092    JAV19953.1    GGFM01007102    MBW27853.1    GGFK01006179    MBW39500.1    DS231885    SPP74916.1    GFDL01015199    JAV19846.1    ADTU01025461    AXCN02000430    AXCM01010384    GANO01001455    JAB58416.1    UFQS01000700    UFQT01000700    SSX06279.1    SSX26633.1    UFQS01004484    UFQT01004484    SSX16391.1    SSX35704.1    AAAB01008807    APCN01000165    CVRI01000040    CRK94773.1    KB632225    ERL90233.1    APGK01036660    KB740941    ENN77606.1    GFDF01004826    JAV09258.1    GECZ01022622    JAS47147.1    GDIQ01024011    JAN70726.1    GDIP01010073    JAM93642.1    GECU01024133    JAS83573.1    GDIQ01214400    JAK37325.1   

Proteomes

UP000037510    UP000007151    UP000001070    UP000001292    UP000053105    UP000002282    + More
UP000008711    UP000000803    UP000192221    UP000009192    UP000092553    UP000008792    UP000095301    UP000037069    UP000007798    UP000268350    UP000001819    UP000008744    UP000095300    UP000007801    UP000053825    UP000078200    UP000005203    UP000091820    UP000092444    UP000092443    UP000092445    UP000242457    UP000215335    UP000192223    UP000235965    UP000078541    UP000027135    UP000008237    UP000078542    UP000007755    UP000053097    UP000279307    UP000036403    UP000078492    UP000007266    UP000030765    UP000078540    UP000076408    UP000075903    UP000075885    UP000069272    UP000069940    UP000249989    UP000000673    UP000075809    UP000009046    UP000008820    UP000075880    UP000002320    UP000075901    UP000005205    UP000075886    UP000075883    UP000075884    UP000076407    UP000075881    UP000007062    UP000075902    UP000075840    UP000183832    UP000030742    UP000019118    UP000075920    UP000075882   

PRIDE

B4HN85    B4P528    B3NLK7    Q7K0Y1    B4KQU8    B4LKS9    + More
B4MYI5    Q28XF0    B4GIU9    Q17LZ2    B0WC36    Q7PTC5   

Pfam

PF08145   BOP1NT        + More
PF00400   WD40

Interpro

IPR019775   WD40_repeat_CS        + More
IPR036322   WD40_repeat_dom_sf       
IPR012953   BOP1_N_dom       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR017986   WD40_repeat_dom       
IPR028598   BOP1/Erb1       
IPR001680   WD40_repeat       
IPR037517   HDAG_dom       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

A0A0L7LL23   A0A212F2L0   B4J9K1   B4HN85   A0A0J9RF50   A0A0M8ZWS3   + More
B4P528   B3NLK7   Q7K0Y1   A0A1W4VCQ4   W8CBB4   B4KQU8   A0A034VJF0   A0A0M4ELA9   B4LKS9   A0A1I8N5B9   A0A0L0C1I5   A0A0K8VJF2   B4MYI5   A0A3B0J1R4   Q28XF0   B4GIU9   A0A310SHE9   A0A0A1WSA2   A0A1I8Q7T4   B3MHX6   A0A0L7QY49   A0A1A9VIH6   A0A088ANP5   A0A1A9X3W6   A0A1B0G4D6   A0A1A9XJ49   A0A1A9ZNI2   A0A2A3EGG3   A0A232EXB6   A0A1W4XB80   A0A2J7RIH7   A0A195FFU5   A0A067R0T8   E2BI62   A0A195CB56   F4WY53   A0A026WUX7   A0A0J7KVS3   A0A195EGR1   D2A5R4   A0A084WK79   A0A1A9USV2   A0A151I3S4   A0A1Y1LC21   A0A182YEL6   A0A182VFU3   A0A2M4BDV5   A0A182P0N9   A0A182FC81   A0A2M4BE27   A0A182G9M8   W5JM85   A0A151X6R2   A0A2K7P690   A0A2M4BEK1   A0A182GVZ6   A0A2M4AEB7   A0A2M4BFW2   E0VAH5   Q17LZ2   A0A1Q3EX49   A0A182IXM4   A0A1Q3EYN9   A0A1Q3EXB7   A0A2M3ZH60   A0A2M4AFE4   B0WC36   A0A3B0JNL4   A0A1Q3EX42   A0A182SEN2   A0A158NSZ1   A0A182QZU2   A0A182MQ54   A0A182NK53   U5EWE2   A0A336KP54   A0A336MZH9   A0A182WWZ8   A0A182KD43   Q7PTC5   A0A182UDK6   A0A182I2J4   A0A1J1I395   U4UD33   N6UAF1   A0A182WLI9   A0A1L8DRZ8   A0A1B6FAB8   A0A182KQE5   A0A0P6J2Y6   A0A0P6BVL7   A0A1B6I9K5   A0A0P5ICG8  

PDB

4U7A     E-value=2.99217e-120,     Score=1108

KEGG

101737818    K14824 ribosome biogenesis protein ERB1 | (RefSeq) ribosome biogenesis protein BOP1 homolog

GO

GO:0005730   GO:0030687   GO:0000466   GO:0005654   GO:0000463   GO:0043021   GO:0035206   GO:0006364   GO:0070545   GO:0005515   GO:0042254   GO:0020037   GO:0006457   GO:0003906   GO:0005634   GO:0006285   GO:0019104   GO:0003824  

PANTHER

PTHR17605  

Subcellular location

Nucleus  
Nucleolus  
Nucleoplasm  

Length:

839

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.24444

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00001

outside

1  -  839

 

 

Pi

290.584844

Theta

217.428932

Tajima's D

0.59043

CLR

0.546326

CSRT

0.543622818859057

Interpretation

Uncertain