Silkworm Genome Informatics Database

Gene

KWMTBOMO10656

Pre Gene Modal

BGIBMGA008260

Annotation

PREDICTED:_protein_charlatan_[Amyelois_transitella]

Location

Bomo_Chr18(+):129006-134071 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.111

CDS

ATGGATAGCGGCTCGGGGGTGGGCAGCGTAGCGTCTCTGAGCATGGACTGCGAAGACATGTTTAAGGAGATCACCAAGAAACTGTACGGCGAGGAGGCAACAGTGGGCGTGGTGGGCGTGGAGTTTCCAGCAGCCGAGCGCGACCTAGACGACGACCTGCGGCCTGAAGAGCACATCACCGCCTGGGGCCTTGCCGCCCTCATGCAGAACGGCTTCCCGCCCCCGGGGATCTTGCAGGCGAACTTCAGTCCGCGCATCGACCCTACAGCCGAGGATCGGTGGACGGCCGCGGAGGAGCCGCTGGCGTGGGCGCACTCCCGCATCGCCGCGTACAACCCCGCGCAGAGACTGTTCAAGTGCGCGCACTGCGACTGTGTCGGCTTCCTCGCCAGGGTCGCGGAGCACTGGCTCGGCACACACTCGCAGTGTCCGGTCTCCGGATGTGGGTTCGCGTCTAGCTGGGCGCGCAGTGTCCGCCAGCACCTCGCGCGGGACCACCACTCCGACCCCGCCGCCGCCGACCAGCTGCTGCGGGACAACCCCGCCCTCGACGACCTCACGCGGTACTTGCAGAGACTGAAGAATAAGGTCGAATCTATGCGTAACGACCGGCGCTCCAACCCCGGAGGGAGCGTGGACAGTCCGCAGAGCGACGCGGGCGCGGGGTCCGGCGGCGGCGCGGCGCCCGGCGCGGTGCCGGACGGCGGCAAGCGGTACGTGTGCGGCGTCTGTCCCTACGCTACCGACCGCCGCGACCTCTTCACCAGACACGAGAATATACACAGAGATGAAAAGCCCTTCCACTGCTACCTCTGTCAGAAGCAGTTTAATCGCGCCGATCACGTCAAGAAACATTTTCTGCGCATGCATCGGGATCAACCCTACGACCTGAACCGCATTCGGCGCGCGACCAACAAGCCGCAACCACAACCGCAACCCGCACAGCAGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGACCCCAAGTCAGGCCCAGCAGCAGCCGACGCTGCACTACTACGGCAAGCCGCCCGCCGAACCTCCGCCCGCCCCCGTCGCCGCCACCGTGGTCACGGAGTACCGCACCGTGGTGCCGTCGGTGGTCAAGATAGAGCGAGCTCCTCTAACGAAAGCGGAGCCGGCGGCCGCCGCCAGCCTGCACAAGCCGGCCGCCGCCGCCGCCGCCGGGCCCGCCGCGCCCGCCGTCGCCATCCCGCCCGCTCGACGGAAGGGGGAGCGTAGATACGCGTGCTGCTACTGCGCTTGGTCCGGCGTGGACAACTGGTGCCTGAAGCGGCACCTCAACACCCACCTCAAGCCGTTCGCGTGCGCGCTCTGCGAGTACAAGGCGGCGCGCTCGGAGCGGCTGGCCACGCACGTGCAGAAGGTGCACAACAAGAAATCCTGCGGGAAGTGCCCGTTCCTCGCGGACGACCAGCACCAGCTCGCAGCTCACCTTCGCGACTCGCACCACGTCGAGAGCCGCAACCTGAAGGTGCCCATCAACGTGGGCCGGGCGCCGGGCGGCGCGGCGGGCGGCGTGTTCCCGGCGGGCGGCGTGCAGCTGTCGGCGGAGGCGGGCGCGGGGGGCGCGGCGGGGGCGGGCGGCGGGGGCGGCGCGGGGGGGCGGCGGCGCGCGGCGGGGGCGGCGCGGCTGTTCGGGTACCTGGAGGCGTCGGACGGGTCGGGAGACGAGTACGAGGCGGCGCCGCTGGAGTACGGCGCGGGGTACGCCCGGGACAAGGAGAACGCGGCCCCGCTGCACCACGACCACTGCCTGCGCTACTAG

Protein

MDSGSGVGSVASLSMDCEDMFKEITKKLYGEEATVGVVGVEFPAAERDLDDDLRPEEHITAWGLAALMQNGFPPPGILQANFSPRIDPTAEDRWTAAEEPLAWAHSRIAAYNPAQRLFKCAHCDCVGFLARVAEHWLGTHSQCPVSGCGFASSWARSVRQHLARDHHSDPAAADQLLRDNPALDDLTRYLQRLKNKVESMRNDRRSNPGGSVDSPQSDAGAGSGGGAAPGAVPDGGKRYVCGVCPYATDRRDLFTRHENIHRDEKPFHCYLCQKQFNRADHVKKHFLRMHRDQPYDLNRIRRATNKPQPQPQPAQQHQQQQQQQQQQQQTPSQAQQQPTLHYYGKPPAEPPPAPVAATVVTEYRTVVPSVVKIERAPLTKAEPAAAASLHKPAAAAAAGPAAPAVAIPPARRKGERRYACCYCAWSGVDNWCLKRHLNTHLKPFACALCEYKAARSERLATHVQKVHNKKSCGKCPFLADDQHQLAAHLRDSHHVESRNLKVPINVGRAPGGAAGGVFPAGGVQLSAEAGAGGAAGAGGGGGAGGRRRAAGAARLFGYLEASDGSGDEYEAAPLEYGAGYARDKENAAPLHHDHCLRY

Uniprot

H9JFG3

Pubmed

19121390

EMBL

BABH01034924 BABH01034925 BABH01034926

Proteomes

UP000005204

PRIDE

H9JFG3

Interpro

IPR036236 Znf_C2H2_sf + More
IPR013087 Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9JFG3

PDB

5K5H E-value=3.11216e-05, Score=115

KEGG

105841601 no KO assigned | (RefSeq) protein charlatan

GO

GO:0040034 GO:0003676 GO:0000981 GO:0046872 GO:0020037 GO:0006457 GO:0003906 GO:0005634 GO:0006285 GO:0019104 GO:0003824

Length:

598

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0377

Exp number, first 60 AAs:

0.00023

Total prob of N-in:

0.00027

outside

1 - 598

Pi

180.507255

Theta

19.07831

Tajima's D

0.042815

CLR

1.498601

CSRT

0.388280585970701

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics