SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10654
Pre Gene Modal
BGIBMGA014427
Annotation
endonuclease-reverse_transcriptase_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 3.692
 

Sequence

CDS
ATGAGAGGTTTTAATGTATTGGCGCTGCTTGCGCTGGCGACTGCTGCCCATGCCTTCGTACCCATAGAGACCAACTATCATGAGGTGATTGGGATCCCTATGGCGATGGAGCTCAAGAGCGCTGAGGAGGGCGCTGACTTCGACGGCGCCAGGATCGTAGGAGGTAGTGTGGCGGGGCTAGGCACTCATCCACATCTTGCCGCTATGGTGATTACTTTGACCGACGGTCGCACCTCCATGTGCGGAGCCTCTCTGCTGAGCCACACCCGCTCCGTGACCGCGGCTCACTGCTGGAGGACCAGGAACTCTCAAGGACGCACGCTTCAATTGGGTTTCGGCACCACTCAGTTCTTCACTGGTGGATTCAGAATTAACACTAACAATGTTCAAATGCACGGCAGCTACAACATGGACACTATTCACAACGACGTGGCTATGATTATCCACGGACGGGTCGGATACACAAATGTGATCCAGCCGATCTTCCTGCCCCCCTCACATCTCCTCAACAACCAGTTCGTGGGTACCTGGGCCTGGGCTGCTGGTTATGGATTAACCAGGGATGGAGGTGGTAGTAACACCCAGAAGCATCAAGTGGCTCTTCGAGTGATCACCAATGCAGTCTGCTCACGTACTTTTAACGGTATCATCGCGTCGACCCTCTGCGTGGACACCCAGGGGGGGCGCAGCACCTGCCGCGGAGACTCCGGTGGACCCCTCGCCTTCACGTACGCAGGACGTCGTACCCTGTGGCAGATCCCTAGTGTACAGGCGGGTTTTGTGAAGGGTCGAGCAACACGAGAACAAATTGTAAATGTAAGACAAATAATTGAGAAAAGTCGGGAGCTTAACATGCCAATACTCTTGTGTTTCATAGATTACACAAAGGCTTTTGATTGTGTTCGGTGGGACTGTTTGTGGAGAATTCTGCGAGAAATGGGCGTACCTCAACATCTAGTATCATTGATCGCTAGCCTTTACCGGGATGGTGTGTCTATGGTTAGAGTGAATGACGTCATCTCGGGACCTTTTAAGCCGGAAAAAGGTGTGCGACAAGGGTGCATACTTTCTCCTATTGTTTTCAATGTTTATGGAGAATATATAATGAGGAAAGCCTTAGAGGAGTGGGAGGGGGGCATCTCAGTCGGTGGCATGAAAATTAGCAATCTGAGATATGCGGACGATACCACGCTTTTCGCGTCATCTGAGAAGGAACTTGCTGACCTATTCCGTAGAATGGAGTATGAGAGTGGTTTAGTGGGGCTCTCCGTTAATAAGTCCAAAACAAAGGTCATGATAGTGGACAGGACCAGTCAAGTCTCTAGAACTGGAGAGCTATCAGAGCTAGAATTCGTCAGCGAGTTCATATAA
Protein
MRGFNVLALLALATAAHAFVPIETNYHEVIGIPMAMELKSAEEGADFDGARIVGGSVAGLGTHPHLAAMVITLTDGRTSMCGASLLSHTRSVTAAHCWRTRNSQGRTLQLGFGTTQFFTGGFRINTNNVQMHGSYNMDTIHNDVAMIIHGRVGYTNVIQPIFLPPSHLLNNQFVGTWAWAAGYGLTRDGGGSNTQKHQVALRVITNAVCSRTFNGIIASTLCVDTQGGRSTCRGDSGGPLAFTYAGRRTLWQIPSVQAGFVKGRATREQIVNVRQIIEKSRELNMPILLCFIDYTKAFDCVRWDCLWRILREMGVPQHLVSLIASLYRDGVSMVRVNDVISGPFKPEKGVRQGCILSPIVFNVYGEYIMRKALEEWEGGISVGGMKISNLRYADDTTLFASSEKELADLFRRMEYESGLVGLSVNKSKTKVMIVDRTSQVSRTGELSELEFVSEFI

Summary

Uniprot
ProteinModelPortal
PDB
2HLC     E-value=1.75372e-21,     Score=254

Ontologies

Topology

SignalP
Position:   1 - 18,         Likelihood:  0.997141
 
 
Length:
456
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
2.4595
Exp number, first 60 AAs:
2.42256
Total prob of N-in:
0.11775
outside
1  -  456
 
 

Population Genetic Test Statistics

Pi
6.316621
Theta
4.520231
Tajima's D
-0.967702
CLR
2.705748
CSRT
0.143492825358732
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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