SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10652
Annotation
reverse_transcriptase_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.397
 

Sequence

CDS
ATGAAGCTCGGTCGCGCTCCCGATTCCGTTTCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAGCCCGGACTCTACGCCTCTACGTCTACGTCTCCTCAGGATACCGCTGAAGCCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACTGCGGAAAATCGTATTCGAATGCGTGTCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGTCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGCTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTACGCCCCCCCTCGCAGGCCCCTCAGGTCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCCACTGGCCGATACATTGCAAACCCAGTGCAAGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTGCTTGCCACCCTCGGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGACTATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTGAGAGACTTCGTCTCATCCAAGGGCAGTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGCGATACACGGGAGCTCTCTTTTTCGACGTCGAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTGAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCACCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCTGCTCCTCCCCACGATCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCAGTTAGCCTTATTCGCCGACAACACGACTGTTTACTATTCCAGTAGAAACAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCCTGGGCCGCTGACTACTCCCCGAATCCTGATCACGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGACGCCTTCAGCTTTAACTCTAGGAGCAGGCTTAGGGACCACGATAACCGTACTCGTCGAAATCGACAAAGAGTCAATGTGCAACCTAAGCCATGCATCAGCCCGCTGAGTTTCTCGCCGGGTTTTCTCAGCGGGTCGCGATTCCGATCCGGTAGTAAATTCATTCGCGAAGCAGCTACTCTTGAGCTGTTAGGTCTCCTTCGGAAGCGCTCGGGCAGCTATTAG
Protein
MKLGRAPDSVSVTRTVVDWHTLGISLAESDPPSLPFSPDSTPLRLRLLRIPLKPHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRVLQRDVKSRIAEVRDVRWSDFLEGLAPSQSSYYRLARTLKSDTVVTTPPLAGPSGRLAAFDDDEKAEPLADTLQTQCKPSTQSVDPVHVELVDSEVERRACLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGLSNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGSLIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPRYTGALFFDVEAFDKVWHNGLILKLFNMGVPDSLVLTIRDFLSNRSFRYRVEGTCSSPRSLTAGVPQGSVLSPLLFSLFVNDIPRSPPTQLALFADNTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFRQPIPWAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSFNSRSRLRDHDNRTRRNRQRVNVQPKPCISPLSFSPGFLSGSRFRSGSKFIREAATLELLGLLRKRSGSY

Summary

Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
SUPFAM
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
641
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.45911000000001
Exp number, first 60 AAs:
9e-05
Total prob of N-in:
0.03778
outside
1  -  641
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0.091468
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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