Gene

KWMTBOMO10650

Pre Gene Modal

BGIBMGA007053

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr18(-):76065-78715      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.649

CDS

ATGGATGACCATGTTCGTGGCATAGTCGGGAAATTCGGGCTAGGGACTCGTAACGAGCGAGGGCAGTTACTCCTCGACTTCTGTGCGGAAAACAATGTTTCAATCATGAACACCCACTTCCAGCATCATCCTCGAAGGTTGTATACATGGATCTCCCCTAACGGTCAACATAGGAACCAGATTGACTATGTCATGATAGGGAAACGATGGAAATCATCTGTCCTGAATGTTAAGACGAGACCAGGTGCAGATTGTGGCAGTGACCACCAACTACTTGTTGCAAAAGTTAAAATCCGTCTTAAGTCAATCAAACAGCAGAAACCTAGGAAGGTGGTGGACATATCGGGTCGAGCGCAGGAGTTGTTTGCCAATGCCATTAAGGAGCGGTTGCGTGATTTTGCCGTAGATCCCTTCGACTCTGCAAATGTTACCTGGGAACAGTTGAAACAGGTAACCTTGCAGACAGCGAGCGAAGTCGTCGGAACACAAGCAATAGAACAACCTAAATCACCTTGGATGTCCGAAGAAACATGGTCAGCTATCGTCAAAAGAAAAGCCCGAAAGGAGGATGGTCTTACGACTGACGCAGATAAGCATGAGTACAGACTGCTGCATCATGAAGTCCAAAGACTTTGCAGACGTGACAGAGATGCCTATATAAGTGCTGTCTGCGACGACATTCAAAGGGATTCTGAACGCATGCATTCTAAGGACATGTTCCGCAGAGTGAAGCTGTTGGCCAAAGAGTACAAGCTGAAAACCTGGACTATTGAGGACGACCGTGGTAACCTCATCATTAACAGGCAGGCTGCGCTGGACAGATGGAGGAGATACAGCGAACAGCTATATAGCGAAAAGGGCTGCAATGATATTGAAGAAAGGGTGGACTATAACCAACATGAGCCAGATATCCTTCTTCAAGAAGTTGAGGCAGCAATCAATAGGCTGAAGCAAAAAGCATGCGGAAGGGACAGCGTAACCGCTCTAATGTTAAAGAGCCTAGGCTCGGATGGTGCCAAGATTTTACACTCCATTTGCCAGAAAGTATGGCGTACTGGCCAGTGGCCTGAAGACTGGACGGAATCAATATTAATTCCTCTCCATAAAAAAGGCTCCACGCGCAAATGTGAGAACTACAGGACTATCTCCATAATCTCGCATGCCAGTAAAATTCTCCTCCATATTATCAATAAAAGACTGGAGAGTTTTATCAGTAGGCAAATCGCAAAAGAGCAAGCGGGTTTTGTTAAGGGTCGAGGAACCAGAGAGCAGATCTTAAACATAAGGCAGTTGATCGAAAAGGCAAGGGAGTTCAACGTCCCGATGGCTCTCTGCTTCATTGACTACGCCAAGGCTTTTGACTGCATCAACTGGAAGAAAATGTTCGACGTGATGCAAGAGATGGGAATACCGGACCACCTCGTCTCCCTTGTTCAGACTCTATATATGGATGGAATTACGAGAGTCAGAATGGACAATGAGTTTTCCCATCCATTTAAGCCCGAACGTGGAGTCAGACAGGGGTGTATTCTTTCCCCACAACTCTTCAACCTCATCGGTGAACACATTATGAGGCTCGTTCTGGAGAACTGGGAGGGGGGTATTCGTGTAGGAGGCCACCGAATTAGTAATCTTCGTTTCGCTGATGATACCACTATAATCGCTGGCACAATGACACGCACTCACGAACTGCGTGACCTGGACGTGGTGCAGGAATTTGTGTACTTGGGGTCATTAATATCCAGTGACGGTGATTGTGACAGGGAGGTGGTCAGGAGGGCCCAGATATCAAAATCAGCCGTGAAGCGATTGGAGAAGATTTGGAGAAATCGCAGCATAAACAAAAAAACTAAGATAAAGCTCATGAGAACCCTTATCTTCTCCATATTCTTGTACGCTTCTGAGACGTGGACCCTCAAGGGCCGTACCCGATCGAGAATTGACGCATTTGAAATGTGGTGTTGGCGCAAAATGTTGGGCGTATCATGGACGGAGCGCCGAACAAATGTGTCAGTTCTCGAGGAGCTAAACGTCAAGACCCGTCTATCTACAATCTGCATGCAGCGTCTCCTCAAATACTTCGGACACGTGGCCCGACAAAATCCCGAGAACTTGGAAAAATTAATAGTTGTAGGTCACGTGGAAGGAAAGAGAAGTCGAGGAAGATTGCCAACCAGGTGGACGGATATTATCAAGGAGGCCACAAACACCAGCGTCCCGGGCGCCATTAAGCAGGCCGAATGCAGGCAGCATTGGAGGAAGCTGGTGCAAAAACTGGACCAAGGTGGTCACGACCCTCAGCAATGA

Protein

MDDHVRGIVGKFGLGTRNERGQLLLDFCAENNVSIMNTHFQHHPRRLYTWISPNGQHRNQIDYVMIGKRWKSSVLNVKTRPGADCGSDHQLLVAKVKIRLKSIKQQKPRKVVDISGRAQELFANAIKERLRDFAVDPFDSANVTWEQLKQVTLQTASEVVGTQAIEQPKSPWMSEETWSAIVKRKARKEDGLTTDADKHEYRLLHHEVQRLCRRDRDAYISAVCDDIQRDSERMHSKDMFRRVKLLAKEYKLKTWTIEDDRGNLIINRQAALDRWRRYSEQLYSEKGCNDIEERVDYNQHEPDILLQEVEAAINRLKQKACGRDSVTALMLKSLGSDGAKILHSICQKVWRTGQWPEDWTESILIPLHKKGSTRKCENYRTISIISHASKILLHIINKRLESFISRQIAKEQAGFVKGRGTREQILNIRQLIEKAREFNVPMALCFIDYAKAFDCINWKKMFDVMQEMGIPDHLVSLVQTLYMDGITRVRMDNEFSHPFKPERGVRQGCILSPQLFNLIGEHIMRLVLENWEGGIRVGGHRISNLRFADDTTIIAGTMTRTHELRDLDVVQEFVYLGSLISSDGDCDREVVRRAQISKSAVKRLEKIWRNRSINKKTKIKLMRTLIFSIFLYASETWTLKGRTRSRIDAFEMWCWRKMLGVSWTERRTNVSVLEELNVKTRLSTICMQRLLKYFGHVARQNPENLEKLIVVGHVEGKRSRGRLPTRWTDIIKEATNTSVPGAIKQAECRQHWRKLVQKLDQGGHDPQQ

Uniprot

D7F174   D7F161   D5LB39   D7F163   D7F172   D7F168   + More
D7F162   D7F175   D7F167   A0A2W1BGD9   A0A2W1BNH4   A0A3S3P648   H2YWZ5   A0A3Q1NFT8   A0A3Q1MD43   A0A2H6KKM9   A0A3Q1LQN1   A0A3Q1MS18   A0A0J7KGF7   A0A3Q1MLZ9   A0A2V9X8L4   A0A3Q1M6J7   A0A3Q1LLN0   A0A2A4JBK9   A0A1W7RAL1   A0A2S2PMS6   A0A2J7QCG2   A0A3Q1LHS3   A0A2J7PT27   A0A2A4JXP9   A0A2J7Q6P7   A0A2J7QUD0   H3B2Y3   A0A2J7R8G1   A0A2J7R901   A0A2J7QMC5   A0A2J7R8P5   A0A076N1B6   A0A2J7RIL8   A0A2J7QEJ0   A0A2J7QJJ9   A0A2J7QI56   A0A2J7Q6A8   A0A2J7QR01   A0A2J7RP47   A0A2J7PW81   A0A2J7PMJ3   H3J6U9   A0A2J7QGX8   A0A2J7PTY0   A0A2J7REE7   A0A2J7PX03   A0A2J7QGT4   A0A2J7RLI7   A0A2J7PQA3   A0A2J7Q5D5   A0A2J7Q2Z3   A0A2J7RGX2   A0A2J7QGJ2   A0A2J7QKB0   A0A2J7QUN7   A0A2J7R4R4   A0A2J7Q0C6   A0A2J7PHM9   A0A2J7QH51   A0A2J7Q3T8   A0A3Q1MJK8   W5MYU0   W5NGM3   A0A3Q1MMW6   A0A3Q1MGH6   A0A2J7Q7C6   A0A3Q1LXQ5   A0A3Q1MQ02   D5LB38   A0A2J7RBL1   A0A2J7PBF1   A0A2J7Q649   A0A2J7RPX5   A0A2J7PF68   A0A2J7PVW0   A0A2J7PNH4   A0A3Q1MP18   A0A2J7QSZ5   A0A3Q1LWU3   A0A2J7PC89  

Pubmed

20470440    28756777    19393038    29078748    9215903   

EMBL

FJ265559    ADI61827.1    FJ265546    ADI61814.1    GU815090    ADF18553.1    + More
FJ265548    ADI61816.1    FJ265557    ADI61825.1    FJ265553    ADI61821.1    FJ265547    ADI61815.1    FJ265560    ADI61828.1    FJ265552    ADI61820.1    KZ150203    PZC72267.1    KZ150025    PZC74827.1    NCKU01004395    RWS06003.1    BDSA01000081    GBE63537.1    LBMM01007694    KMQ89503.1    QIAP01000240    PYX61602.1    NWSH01001998    PCG69477.1    GFAH01000222    JAV48167.1    GGMR01018096    MBY30715.1    NEVH01016289    PNF26277.1    NEVH01021921    PNF19488.1    NWSH01000469    PCG76200.1    NEVH01017460    PNF24248.1    NEVH01011186    PNF32183.1    AFYH01119920    NEVH01016335    NEVH01006721    PNF25462.1    PNF37115.1    PNF37310.1    NEVH01013215    PNF29703.1    PNF37211.1    KF881087    AIJ27486.1    NEVH01003500    PNF40666.1    NEVH01015309    PNF27009.1    NEVH01013553    PNF28765.1    NEVH01013959    PNF28275.1    NEVH01017534    PNF24114.1    NEVH01012082    PNF31006.1    NEVH01002141    PNF42599.1    NEVH01020937    PNF20581.1    NEVH01023985    PNF17546.1    AAGJ04118689    AAGJ04161747    NEVH01014359    PNF27813.1    NEVH01021219    PNF19787.1    NEVH01005277    PNF39212.1    NEVH01020865    PNF20863.1    PNF27789.1    NEVH01002684    PNF41704.1    NEVH01022640    NEVH01008218    NEVH01005885    PNF18513.1    PNF34430.1    PNF38481.1    NEVH01017570    PNF23798.1    NEVH01019075    PNF22955.1    NEVH01003750    PNF40091.1    NEVH01018372    NEVH01014371    NEVH01011208    NEVH01002697    NEVH01002552    PNF23678.1    PNF27673.1    PNF31697.1    PNF41592.1    PNF42118.1    NEVH01013275    PNF29009.1    NEVH01023960    NEVH01010501    PNF17732.1    PNF32290.1    NEVH01007402    PNF35815.1    NEVH01019971    PNF22037.1    NEVH01025135    PNF15828.1    NEVH01014358    PNF27914.1    NEVH01019064    PNF23230.1    AHAT01017643    AHAT01008485    NEVH01017443    PNF24485.1    GU815089    ADF18552.1    NEVH01005896    PNF38208.1    NEVH01027104    PNF13657.1    NEVH01017540    PNF24056.1    NEVH01020851    NEVH01013954    NEVH01006574    NEVH01001358    NEVH01001354    PNF21237.1    PNF28332.1    PNF37782.1    PNF42792.1    PNF42884.1    NEVH01026085    PNF14968.1    NEVH01020940    PNF20478.1    NEVH01023953    PNF17877.1    NEVH01011205    PNF31711.1    NEVH01027067    PNF13944.1   

Proteomes

UP000285301    UP000007875    UP000009136    UP000036403    UP000247801    UP000218220    + More
UP000235965    UP000008672    UP000007110    UP000018468   

PRIDE

D7F174    D7F161    D5LB39    D7F163    D7F172    D7F168    + More
D7F162    D7F175    D7F167    D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR002138   Pept_C14_p10       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F174   D7F161   D5LB39   D7F163   D7F172   D7F168   + More
D7F162   D7F175   D7F167   A0A2W1BGD9   A0A2W1BNH4   A0A3S3P648   H2YWZ5   A0A3Q1NFT8   A0A3Q1MD43   A0A2H6KKM9   A0A3Q1LQN1   A0A3Q1MS18   A0A0J7KGF7   A0A3Q1MLZ9   A0A2V9X8L4   A0A3Q1M6J7   A0A3Q1LLN0   A0A2A4JBK9   A0A1W7RAL1   A0A2S2PMS6   A0A2J7QCG2   A0A3Q1LHS3   A0A2J7PT27   A0A2A4JXP9   A0A2J7Q6P7   A0A2J7QUD0   H3B2Y3   A0A2J7R8G1   A0A2J7R901   A0A2J7QMC5   A0A2J7R8P5   A0A076N1B6   A0A2J7RIL8   A0A2J7QEJ0   A0A2J7QJJ9   A0A2J7QI56   A0A2J7Q6A8   A0A2J7QR01   A0A2J7RP47   A0A2J7PW81   A0A2J7PMJ3   H3J6U9   A0A2J7QGX8   A0A2J7PTY0   A0A2J7REE7   A0A2J7PX03   A0A2J7QGT4   A0A2J7RLI7   A0A2J7PQA3   A0A2J7Q5D5   A0A2J7Q2Z3   A0A2J7RGX2   A0A2J7QGJ2   A0A2J7QKB0   A0A2J7QUN7   A0A2J7R4R4   A0A2J7Q0C6   A0A2J7PHM9   A0A2J7QH51   A0A2J7Q3T8   A0A3Q1MJK8   W5MYU0   W5NGM3   A0A3Q1MMW6   A0A3Q1MGH6   A0A2J7Q7C6   A0A3Q1LXQ5   A0A3Q1MQ02   D5LB38   A0A2J7RBL1   A0A2J7PBF1   A0A2J7Q649   A0A2J7RPX5   A0A2J7PF68   A0A2J7PVW0   A0A2J7PNH4   A0A3Q1MP18   A0A2J7QSZ5   A0A3Q1LWU3   A0A2J7PC89  

KEGG

101741149    no KO assigned | (RefSeq) uncharacterized LOC101741149

GO

GO:0003964   GO:0004519   GO:0004197  

Length:

768

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15493

Exp number, first 60 AAs:

0.00081

Total prob of N-in:

0.00055

outside

1  -  768

 

 

Pi

238.489037

Theta

35.162072

Tajima's D

2.218445

CLR

0.167729

CSRT

0.914754262286886

Interpretation

Uncertain