SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10642
Annotation
PREDICTED:_uncharacterized_protein_LOC105841662_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.638
 

Sequence

CDS
ATGTACCGCACACCGACAACCTCCGGCGCTGCCAGAAAACCTGGTTCCTCCAGCCCCACTGCAACCCCATCTGCACCAGCGCAGGACGCTGCAAAAACTTTTATCCGGAGACCAGACCGGAAAAGAAGATCACTGGATAATATGGCGATATACAACAAGCATATAGAGGACTACGCGGTGAAACCGAGTGACGCGCTCCTCCAGGAGGTGATGAAGACCTTTGAGGACATTCCAGCGAAAGTCCAAGAATACCCTCAAATGAGGAAAGATATAAAGACCTTCCTGGAGGGGCAGTCTGATAAGTGCCTCCGTATCTTGTTTGAATTAAGCAAGCGAGTGACATGTTTGGAAGCAACAGCAACCAAAACGCGGTCGCCCCGTACAGCCAGATCGCCCGAAAAAGACGACGTCCACATCTTAGAAAAGTTGGGGGAAGTGGAAAACCTGGTACAAAAGCGACTGAATGAGTTGGAAAGTAGGATGCTAGCATGCTTCGACGACCAAATCAGGCTTCAAAATGATGACTGCGCCGACATGGTCCGCAAGATTGGCAATAAAATCGATGACGCTAAAGCGGCCATTGACCACACAACAGAGGGTGTCAGGATCGCTCATCGATCCCAAATAATTCTTGATGAGAAACTCGACAATATTGCGGGGAATGTGGCGGCCGTTAATGCAACAGTGATTGAGGTCGCAAAAAATAAGCAGCCATGCGAAGCTAAGACCTACGCTAGCGTCGCAGCAGCCAAGCCCGGGCATCGGCCGGCACTACACTCGATGGCGGTCACCCTCGAAGGCAGTCAGGAGACTGCCGACGAGGTGCTTGAGAGAGTGAGGAAGGCGGTCGATGCCAGGGGTACTGGCCTGAAAATAAGCAAGGTGCGCAAAGCAAAAAACCAAACAGTTATTTTAGGGTGTGACACCGAAGCGGAACTATACAAGGTGAAAGAAACAATTGAAAGCCGGGGGGAGGGCTTAATTGTTTCCCGTATGAAAAATAAAAACCCGCTTGTCATCCTAAAAGATGTCTTCCTCCCGAGTGACGACGAGGAGATAATTAAAGGGCTACATATTCAAAACGAGGATATATTTAGGGACTTGTCTCAGGAAGATAAAGAAATGACCATAAAGTTCAAGAAGAGGACAAAAAATCCCAAAACGGCGCACGTCATTGTCCAGGTTGGTCCCGTGGTATGGCAGAGGATGACGGAGGCTGGGGCCCTCTACCTGGACCTGCAAAGGATCAGAGTCGAGGACCAGTCTCCGCTCATCCAATGCACGAGGTGCCTCGCATTTGGACATGGTCGAAAATTTTGCACCGAGAGTGTGGACAGATGCAGTCACTGTGGAGGACCGCATCTGCGCGAGAAATGCGCAGACTTCATCGCAGGGACCGAACCGCAGTGCTGCAACTGCTCACACTCTGGGTTGCGGAAGGCCGACCATAACGCTTTTAGCGCCGAATGCCCGATACGAAAAAAGTGGGATTACTTGGCTCGCGCTAACACAACATATGCATAA
Protein
MYRTPTTSGAARKPGSSSPTATPSAPAQDAAKTFIRRPDRKRRSLDNMAIYNKHIEDYAVKPSDALLQEVMKTFEDIPAKVQEYPQMRKDIKTFLEGQSDKCLRILFELSKRVTCLEATATKTRSPRTARSPEKDDVHILEKLGEVENLVQKRLNELESRMLACFDDQIRLQNDDCADMVRKIGNKIDDAKAAIDHTTEGVRIAHRSQIILDEKLDNIAGNVAAVNATVIEVAKNKQPCEAKTYASVAAAKPGHRPALHSMAVTLEGSQETADEVLERVRKAVDARGTGLKISKVRKAKNQTVILGCDTEAELYKVKETIESRGEGLIVSRMKNKNPLVILKDVFLPSDDEEIIKGLHIQNEDIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVGPVVWQRMTEAGALYLDLQRIRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHSGLRKADHNAFSAECPIRKKWDYLARANTTYA

Summary

Pfam
PF00098   zf-CCHC
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF57756   SSF57756       
ProteinModelPortal

Ontologies

Topology

Length:
507
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00085
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00579
outside
1  -  507
 
 

Population Genetic Test Statistics

Pi
59.418293
Theta
61.59796
Tajima's D
0.498372
CLR
1.381229
CSRT
0.520473976301185
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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