Gene

KWMTBOMO10638  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003961

Annotation

PREDICTED:_nuclear_protein_localization_protein_4_homolog_[Bombyx_mori]

Location

Bomo_Chr17(+):16695606-16697630      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.383

CDS

ATGTCGGACCTGCACGTGCTGCTGTACCTGGCGTCCAACGAGGCGCTGGCGCTGGGCATGGAGTCGCTGGCGCCGCTGCTGGACGCCGTGCGGCTGCGGGACGGGGACGCCGCCGAGGCGTGGCGCGCCCTGCCCAGCGCCGCCACGCTGCTGCACCTGGCCGCCGCCGACACCGGGGCGGAAGGGGTCCGGGCGGAGGGGGGCCGAGCCGTCTGGACGTGCGCCGTCTGCACCTTCCACAACCCCCCCGCCGCCGCCTCCTGCGACATGTGCGCCATGCCCAGATAA

Protein

MSDLHVLLYLASNEALALGMESLAPLLDAVRLRDGDAAEAWRALPSAATLLHLAAADTGAEGVRAEGGRAVWTCAVCTFHNPPAAASCDMCAMPR

Uniprot

H9J374   A0A194QDW2   A0A194R3W0   A0A3Q3E8G3   A0A3Q3DLG9   A0A1Z5L8M5   + More
A0A1Y1K1B8   G3U4D3   G3UDP2   A0A2K5YRQ3   G1SKM5   A0A2D4PTQ6   A0A0V0Y9X4   A0A0V0Y8Z6   A0A293LNS1   A0A2D4MBF8   L9KZ26   A0A1U7QD53   H0XCQ9   K9ITG1   V8PHM1   A0A1W7RF64   T1DM32   U3FWH2   A0A146MGZ6   A0A2R5LLL1   A0A3B3ZDT2   A0A3Q3ES91   G1KQR1   J3S974   A0A0P7VVF6   A0A3Q3ES21   A0A1W4ZJP0   H3BGJ8   F7IBG3   L7MGT1   A0A147BU87   A0A131XYC7   J9NXM8   L7MIJ9   A0A224Z5A8   A0A131YMX2   L7LXZ5   L7MFR2   A0A0C9R0N1   S7QF65   T1IW71   A0A1S3Q732   A0A1S3Q766   A0A060XNR8   A0A1S3Q7B4   G3GX68   A0A0V1HKF0   A0A2U9CQP5   A0A023GNV8   H2SHH2   A0A1A7YK87   A0A131XHQ3   G3MM79   A0A0V1NSC2   A0A0V1NSA9   A0A0V1NSA6   F7C8S1   F7DM09   A0A2H8TTW0   B5DFQ1   J9JVA1   E9GZ93   A0A1B0DH91   A0A0B1PGK8   A0A1B0CAK0   A0A2Y9DGF5   A0A0V0WIP4   A0A2H1V6G3   A0A1L8DXH7   A0A0V0UTC1   A0A0V1CJC1   T1I1X9   A0A0V1ABQ9   Q7SZT9   A0A023F2S9   A0A2R7X9P5   A0A1B6FBW7   A0A224X964   A0A0V0G7N4   A0A3M7QMW6   A0A0V1IGB8   A0A0V1FGV3   A0A1B6E2U5   A0A250Y263   A0A1B6CST9   A0A1B6HXV2   A0A0V0Y9Y4   A0A2P4VVA1   T1JQQ6   A0A1B6LPU9   A0A0V1MXS0   S4RQ99   A0A0V1MYB7  

Pubmed

19121390    26354079    28528879    28004739    21993624    23385571    + More
24297900    26358130    23758969    23915248    26823975    25463417    23025625    9215903    25576852    29652888    16341006    28797301    26830274    26131772    24755649    21804562    21551351    28049606    22216098    20431018    21292972    27762356    25474469    30375419    28087693    26114425    26394399   

EMBL

BABH01036713    BABH01036714    BABH01036715    KQ459144    KPJ03662.1    KQ460779    + More
KPJ12377.1    GFJQ02003193    JAW03777.1    GEZM01095937    GEZM01095936    JAV55244.1    IACN01094274    LAB61330.1    JYDU01000037    KRX96967.1    KRX96964.1    GFWV01004779    MAA29509.1    IACM01088688    IACM01088689    LAB30715.1    KB320577    ELW68210.1    AAQR03040890    AAQR03040891    AAQR03040892    AAQR03040893    AAQR03040894    AAQR03040895    AAQR03040896    AAQR03040897    AAQR03040898    AAQR03040899    GABZ01001160    JAA52365.1    AZIM01000013    ETE74029.1    GDAY02001648    JAV49779.1    GAAZ01001672    JAA96271.1    GAEP01001050    GBEW01000655    JAB53771.1    JAI09710.1    GDHC01006217    GDHC01000412    JAQ12412.1    JAQ18217.1    GGLE01006277    MBY10403.1    JU175294    GBEX01002307    AFJ50818.1    JAI12253.1    JARO02000568    KPP78109.1    AFYH01017200    AFYH01017201    AFYH01017202    AFYH01017203    AFYH01017204    AFYH01017205    AFYH01017206    AFYH01017207    GACK01002640    JAA62394.1    GEGO01001332    JAR94072.1    GEFM01004524    JAP71272.1    AAEX03006170    GACK01000998    JAA64036.1    GFPF01010256    MAA21402.1    GEDV01009121    JAP79436.1    GACK01008078    JAA56956.1    GACK01002946    JAA62088.1    GBZX01002260    JAG90480.1    KE164748    EPQ19862.1    AFFK01019845    FR905708    CDQ81116.1    JH000058    EGW06242.1    JYDP01000052    KRZ11195.1    CP026260    AWP18159.1    GBBM01000673    JAC34745.1    HADW01020688    HADX01008376    SBP30608.1    GEFH01001962    JAP66619.1    JO842980    AEO34597.1    JYDM01000110    KRZ86872.1    KRZ86873.1    KRZ86871.1    AAMC01099534    AAMC01099535    AAMC01099536    AAMC01099537    AAMC01099538    GFXV01005861    MBW17666.1    BC169147    AAI69147.1    ABLF02027236    GL732577    EFX75107.1    AJVK01060798    KN538429    KHJ40789.1    AJWK01003848    JYDK01000119    KRX75599.1    ODYU01000676    SOQ35854.1    GFDF01002943    JAV11141.1    JYDN01000168    KRX54528.1    JYDI01000179    KRY49329.1    ACPB03000283    ACPB03000284    JYDQ01000010    KRY22251.1    BC056013    CM004483    AAH56013.1    OCT60443.1    GBBI01002790    JAC15922.1    KK861442    PTY28180.1    GECZ01022057    JAS47712.1    GFTR01007550    JAW08876.1    GECL01001962    JAP04162.1    REGN01005649    RNA12630.1    JYDS01000193    KRZ21770.1    JYDT01000096    KRY85196.1    GEDC01005074    JAS32224.1    GFFV01002207    JAV37738.1    GEDC01020903    GEDC01014755    JAS16395.1    JAS22543.1    GECU01028213    JAS79493.1    KRX96965.1    LFJK02000013    POM41209.1    CAEY01000440    GEBQ01014269    JAT25708.1    JYDO01000027    KRZ76548.1    KRZ76549.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000264820    UP000007646    UP000233140    + More
UP000001811    UP000054815    UP000011518    UP000189706    UP000005225    UP000261520    UP000261660    UP000001646    UP000034805    UP000192224    UP000008672    UP000008225    UP000002254    UP000087266    UP000193380    UP000001075    UP000055024    UP000246464    UP000005226    UP000054924    UP000008143    UP000007819    UP000000305    UP000092462    UP000092461    UP000248480    UP000054673    UP000054681    UP000054653    UP000015103    UP000054783    UP000186698    UP000276133    UP000054805    UP000054995    UP000237256    UP000015104    UP000054843    UP000245300   

PRIDE

H9J374   

Pfam

PF11543   UN_NPL4        + More
PF05021   NPL4
PF05020   zf-NPL4
PF00641   zf-RanBP
PF00271   Helicase_C
PF00270   DEAD

Interpro

IPR016563   Npl4        + More
IPR007717   NPL4_C       
IPR001876   Znf_RanBP2       
IPR029071   Ubiquitin-like_domsf       
IPR007716   NPL4_Zn-bd_put       
IPR037518   MPN       
IPR036443   Znf_RanBP2_sf       
IPR024682   Npl4_Ub-like_dom       
IPR000626   Ubiquitin_dom       
IPR027417   P-loop_NTPase       
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR000629   RNA-helicase_DEAD-box_CS       

SUPFAM

SSF54236   SSF54236        + More
SSF90209   SSF90209       
SSF52540   SSF52540       

CDD

cd08061  MPN_NPL4
cd00079  HELICc

ProteinModelPortal

H9J374   A0A194QDW2   A0A194R3W0   A0A3Q3E8G3   A0A3Q3DLG9   A0A1Z5L8M5   + More
A0A1Y1K1B8   G3U4D3   G3UDP2   A0A2K5YRQ3   G1SKM5   A0A2D4PTQ6   A0A0V0Y9X4   A0A0V0Y8Z6   A0A293LNS1   A0A2D4MBF8   L9KZ26   A0A1U7QD53   H0XCQ9   K9ITG1   V8PHM1   A0A1W7RF64   T1DM32   U3FWH2   A0A146MGZ6   A0A2R5LLL1   A0A3B3ZDT2   A0A3Q3ES91   G1KQR1   J3S974   A0A0P7VVF6   A0A3Q3ES21   A0A1W4ZJP0   H3BGJ8   F7IBG3   L7MGT1   A0A147BU87   A0A131XYC7   J9NXM8   L7MIJ9   A0A224Z5A8   A0A131YMX2   L7LXZ5   L7MFR2   A0A0C9R0N1   S7QF65   T1IW71   A0A1S3Q732   A0A1S3Q766   A0A060XNR8   A0A1S3Q7B4   G3GX68   A0A0V1HKF0   A0A2U9CQP5   A0A023GNV8   H2SHH2   A0A1A7YK87   A0A131XHQ3   G3MM79   A0A0V1NSC2   A0A0V1NSA9   A0A0V1NSA6   F7C8S1   F7DM09   A0A2H8TTW0   B5DFQ1   J9JVA1   E9GZ93   A0A1B0DH91   A0A0B1PGK8   A0A1B0CAK0   A0A2Y9DGF5   A0A0V0WIP4   A0A2H1V6G3   A0A1L8DXH7   A0A0V0UTC1   A0A0V1CJC1   T1I1X9   A0A0V1ABQ9   Q7SZT9   A0A023F2S9   A0A2R7X9P5   A0A1B6FBW7   A0A224X964   A0A0V0G7N4   A0A3M7QMW6   A0A0V1IGB8   A0A0V1FGV3   A0A1B6E2U5   A0A250Y263   A0A1B6CST9   A0A1B6HXV2   A0A0V0Y9Y4   A0A2P4VVA1   T1JQQ6   A0A1B6LPU9   A0A0V1MXS0   S4RQ99   A0A0V1MYB7  

PDB

3A9J     E-value=0.0652628,     Score=77

KEGG

101736135    K14015 nuclear protein localization protein 4 homolog | (RefSeq) nuclear protein localization protei

PATHWAY

04141    Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)

GO

GO:0046872   GO:0006511   GO:0036501   GO:0032480   GO:0034098   GO:0039536   GO:0030970   GO:0031625   GO:0043130   GO:0005634   GO:0005524   GO:0016021   GO:0003743   GO:0008270   GO:0000413   GO:0003755   GO:0006457   GO:0003906   GO:0006285   GO:0019104   GO:0003824  

Length:

95

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.21265

Exp number, first 60 AAs:

0.20933

Total prob of N-in:

0.06074

outside

1  -  95

 

 

Pi

149.701192

Theta

154.283899

Tajima's D

-0.98587

CLR

198.743378

CSRT

0.141442927853607

Interpretation

Uncertain