SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10633
Pre Gene Modal
BGIBMGA003937
Annotation
PREDICTED:_prominin-like_protein_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 1.713
 

Sequence

CDS
ATGAATAAAATCAGCCAGCAACTGATCCTTGATATGTCGGACGTTATGGACCTGGCGACTCCTAATTACTCGACACCCATAATTAACACAACTTATGTGGCCAGTCTGCAATTCGACATGCGAGCCATGGGCCCGCTATACAACTCCACACATATGATCATCGACGCTATCGCCAATAAACAAGCTTATCCTGAAGGAATAGTGTCCGTGTCCGACGGTCACTTGGACATCGCGTCACCGCGAGACAATTGGAAGGTGCTGTTAGCGCATTACGCCGGGCCCACCGCCATCGTAGTAGTCACGGCACTGGTGATTGCTGCTCTGCCACTAGCCGGGTTATTCTGGTGCTGCTGCTACTGGTGCCGCGTGGGACGACGCCGGAGACCCTTCGACCGCAAATATGACGCCTGTCTCAAAGGCATCCTTGCCATACTCCTCATTGGATTGCTCACATTATTCTTGTTCGGAGTGGTCTGCGCGTTCGCGACGGACTCTCAAGTGGAGGACGGGATGGCGGACGCTCCGGACTCGCTGCGGGACGGCATCCGGGACGCCCAGGAGTTCCTCAACGCGACGCAGGCGCACGCCCGCTGGCTGCTCGTCGTCAACTACAGGGAGCTCAAGGACGCTCTGAACGCGGTGCTCCGCACGAGCGGCATGACTGTGGCGCTGAAGCTGGGCGAGTTCTCGCACGCGGCGTCGGTGAGCGCGCTCAGCCGCATGGTGGCGCGGCTGGACGACGTGCGCGCCGACCTGCGCGCCGTGCACGCGCTCACCGACGCGCTGCGACACCACGCCGACGCGCTCAACGCAGGTCTCCGCAAGGTGAAGAACCAGCTGCTCCAGACCCTGGCGCGCTGCGACCAGCCCAACTGCAAGGCTCTGCAGAACAAGTACAAGCTGGGCCAGCTGGACACGGAGATACACTACAGTCAGATGCCGGACGTGTCTCCGCTACTCAGCAGCGTCTCCGTGCTCCTCGAGGGACACATCCAGGAGGAGGTGGCCGCCGGTCAGCAAGTGTTCAGGGACATACAGTACGGGATCCGGCGCTCCATCGACACCCACATACCCGACGTGCAGAACGCCATCGAGGAGACCGGTCGCAAGCTGGAGGGCATCGCGGAGCAGATCACGCAGCTGGCCGGCAACGCGAGCGCGCGGCTGGCGAGCGACGGCGGCGGCGCGGCGGACGCGCTGCGGAGCCTGCACGCGCGCTACGGGCCCTACCGCCGCCACGCCGGGCTGGCGGCCGCGCTCGCGCTCCTAGCGATAACGTTGCTGCTGGTGTGGGGGCTGGTGTGCGGCGTGTGCGGCAAGCGCCCCGACGCGTACGGCGCCGCGGACTGCTGCAACAAGGGCGCCGGCGCGCGCTGCCTGCTCTGGTACCGCGCTCTCTCTGAACTGTCCACTTTGCGAAACCAAAGCGGCGTGGGCGCGACGCTGGCGGCGGGCGGCGCGGTGGCGCTGGTGCTGCTGGTGCACTTCGCCGCGGGGCTCGCCGCGCAGCGCTTCGTGTGCGACCCGCTCACAGAGCCCCGCGGTAACCGTCTGTTCGAGGACCTGGAGAAGTTCGTCGACCTGGAGAAGATGCTGTTCAACGAGCGGCTAGACCCCAACTTCAACATGACGTCCGTGCTGCTGCAGTGCCACATGAACCACACCATATACGAGACGCTGCAGCTGCGGCGCGTGTACGACGTGGAGGAGCTGCGGCGCGCGCTGGGGGCCGCCGTGGGGGCGCGCGTGCGGTCCCTGCGCGCCCGCTACCCGCAGGAGGCGGCGCGCGGCCGCGTCACGCTGCTGCGGGACCCCGCCAAGCTCAAGCTGACCGAGCTGGCCAACACGCAGCTCTCGGACTTCGACTTCGACAAGATCCTGGATGCCCTGGAGAGCAACCTGACGACGCTGTCGCTGGAGGAGCTGGGCGAGCGGCTGACGAGCGCGGCGGGCGCGCGGGGGCTGGCGGGGTCGCGGGAGGGGGCGGACCTGCGCCGCGCCGCCGCCGCGCTGGCGCAGCTGCACGCCGACCTGCTGCTGCCCATGCGCAACTACACGCTCCAGCTCAACCGGACGGCGACAAAACTCCGCGACGAGCTGCGGTTCAACCAGTCGTCGCTGAAGGCGGCCATCTTGTACCACCTCCACGAGACCAACGAGGCCGAGGACTTCCTCAACAACCAGGGGCCGCAGCTGCTGGAGAACATCACGGCGGCGTTCGCGGCGGTGGTGGAGCGCGAGGTGGGCGCGTACGGCGAGCGCCTGTCCGCCGCCGCCGCGCGCCACGTGGGCCGCTGCGGTCCGCTCTCCGCCGGATTCAACGCCACGCGCGACGCGCTCTGCACCAAGCTGCTGCTGCCCGCGGTGAGTGCCGCCCCCGCCCCGCCCCGCCCGCACCCCGCCCCCGACCCCCCGCCTCACCGCGCCTGTGCCCCGCAGAACGGCTACTGGATGTCGCTGGCGTGGGGCCTGCTGGTGCTGGTGCCGGTGCTGGTGGTGGCGCAGCGGCTGGCCGGGCTGTACCTGCAGGCCGACCCCTACCCCGGACCGCTAGTCGAGGCCGAATATTTGTATGACGCGTACGCGGACCGCGATAACGTACCCCTCGCCAACAGTGGGTCAAAACGCAGTACGCTGGACATCGAGGGTAAGATTGCGGAGTGGAGGGACCGGGCCGTCCCCTCCGCCCCCCCGCCCCACTCGCCTCCCCCGTCGCCCCCGCACTCTCGCACGCAGCTCCTGCTCGCGGGGGAGGAGGTCGTGTGCCAGCTGGTGGCCCCGCCCCCCGGACTCATCGACGACCTCAAGACTCGACTCGACGCTAAAGACGAGGACAACGAGTCCGGAATACACGAGTCCGAGTAA
Protein
MNKISQQLILDMSDVMDLATPNYSTPIINTTYVASLQFDMRAMGPLYNSTHMIIDAIANKQAYPEGIVSVSDGHLDIASPRDNWKVLLAHYAGPTAIVVVTALVIAALPLAGLFWCCCYWCRVGRRRRPFDRKYDACLKGILAILLIGLLTLFLFGVVCAFATDSQVEDGMADAPDSLRDGIRDAQEFLNATQAHARWLLVVNYRELKDALNAVLRTSGMTVALKLGEFSHAASVSALSRMVARLDDVRADLRAVHALTDALRHHADALNAGLRKVKNQLLQTLARCDQPNCKALQNKYKLGQLDTEIHYSQMPDVSPLLSSVSVLLEGHIQEEVAAGQQVFRDIQYGIRRSIDTHIPDVQNAIEETGRKLEGIAEQITQLAGNASARLASDGGGAADALRSLHARYGPYRRHAGLAAALALLAITLLLVWGLVCGVCGKRPDAYGAADCCNKGAGARCLLWYRALSELSTLRNQSGVGATLAAGGAVALVLLVHFAAGLAAQRFVCDPLTEPRGNRLFEDLEKFVDLEKMLFNERLDPNFNMTSVLLQCHMNHTIYETLQLRRVYDVEELRRALGAAVGARVRSLRARYPQEAARGRVTLLRDPAKLKLTELANTQLSDFDFDKILDALESNLTTLSLEELGERLTSAAGARGLAGSREGADLRRAAAALAQLHADLLLPMRNYTLQLNRTATKLRDELRFNQSSLKAAILYHLHETNEAEDFLNNQGPQLLENITAAFAAVVEREVGAYGERLSAAAARHVGRCGPLSAGFNATRDALCTKLLLPAVSAAPAPPRPHPAPDPPPHRACAPQNGYWMSLAWGLLVLVPVLVVAQRLAGLYLQADPYPGPLVEAEYLYDAYADRDNVPLANSGSKRSTLDIEGKIAEWRDRAVPSAPPPHSPPPSPPHSRTQLLLAGEEVVCQLVAPPPGLIDDLKTRLDAKDEDNESGIHESE

Summary

EMBL
KZ149989    PZC75634.1    NWSH01002377    PCG68434.1    KQ459144    KPJ03673.1    + More
AGBW02009651    OWR50242.1    ODYU01009333    SOQ53683.1    GBYB01014055    JAG83822.1    GBYB01003400    JAG73167.1    KK107503    EZA49566.1    KQ435837    KOX71476.1    KQ983097    KYQ47499.1    GBYB01003090    JAG72857.1    KQ414608    KOC69352.1    KZ288313    PBC28344.1    NNAY01000655    OXU27158.1    QOIP01000006    RLU21443.1    ADTU01017793    ADTU01017794    ADTU01017795    ADTU01017796    ADTU01017797    ADTU01017798    ADTU01017799    ADTU01017800    ADTU01017801    ADTU01017802    KQ976688    KYM78129.1    GL888090    EGI67678.1    KQ435010    KZC13741.1    GEDC01000821    JAS36477.1    GEDC01006513    JAS30785.1    LBMM01000187    KMR04544.1    GL443425    EFN62090.1    GGMS01009534    MBY78737.1    KQ976958    KYN06796.1    GFTR01008355    JAW08071.1    GFXV01004739    MBW16544.1    GANO01002606    JAB57265.1    GECU01033724    GECU01018006    JAS73982.1    JAS89700.1    ABLF02035220    ABLF02035221    GGMS01006657    MBY75860.1    GL446793    EFN87247.1    UFQT01000614    SSX25762.1    UFQT01000253    SSX22408.1    JRES01000611    KNC29872.1    NEVH01024942    PNF16690.1    GGFK01002009    MBW35330.1    AXCN02000419    GGFL01002715    MBW66893.1    AAAB01008960    EAA10743.3    JXUM01029560    KQ560856    KXJ80616.1    APCN01001511    JXUM01018352    JXUM01018353    JXUM01018354    JXUM01018355    KQ560510    KXJ82058.1    GDIQ01147264    JAL04462.1    ADMH02001414    ETN62615.1    CH477897    EAT35263.1    GDIP01163914    JAJ59488.1    GL732525    EFX89151.1    GDIP01105874    JAL97840.1    GDIP01051238    JAM52477.1    GDIP01029546    JAM74169.1    GDIP01043841    JAM59874.1    GDIQ01098427    JAL53299.1    GDIQ01028049    JAN66688.1    CVRI01000075    CRL08743.1    KA645122    AFP59751.1    GDIP01043840    JAM59875.1    GGFK01002026    MBW35347.1    LJIG01022816    KRT78569.1    PNF16691.1    GDIP01150468    JAJ72934.1    GDIP01141528    JAL62186.1    GDIP01142577    JAL61137.1    GEZM01006962    GEZM01006961    JAV95525.1    GDIQ01227035    JAK24690.1    GDIP01213019    JAJ10383.1    GDIP01187113    JAJ36289.1    GDIP01195165    JAJ28237.1    GDIP01043842    JAM59873.1    GDIP01064893    JAM38822.1    GDIP01130330    JAL73384.1    GDIP01147819    JAJ75583.1    GDIP01112978    JAL90736.1    GDIQ01028803    JAN65934.1    QCYY01000925    ROT81731.1    GDIQ01091827    JAL59899.1   
Pfam
PF05478   Prominin
Interpro
IPR008795   Prominin       

Ontologies

Topology

Length:
954
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
100.793940000001
Exp number, first 60 AAs:
1.90333
Total prob of N-in:
0.11018
outside
1  -  96
TMhelix
97  -  119
inside
120  -  139
TMhelix
140  -  162
outside
163  -  414
TMhelix
415  -  437
inside
438  -  476
TMhelix
477  -  499
outside
500  -  954
 
 

Population Genetic Test Statistics

Pi
195.340816
Theta
173.64678
Tajima's D
0.273796
CLR
0.552888
CSRT
0.451377431128444
Interpretation
Uncertain
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