Gene

KWMTBOMO10623

Pre Gene Modal

BGIBMGA003942

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_15-hydroxyprostaglandin_dehydrogenase_[NAD(+)]-like_[Bombyx_mori]

Location

Bomo_Chr17(-):16023618-16024776      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.335 PlasmaMembrane   Reliability : 1.472

CDS

ATGTTGGGCTACATAATTCTGGCCAGTTTAGCACTTTACAGAATAGCAAATGCTGCTGATGAGCGCGAAATCGAAGGCAAAGTTGTCGTCGTGACTGGAGCAGCGCAAGGAATCGGCTATGCTATCGCCGACAACTTTTTAGCTAACGGTGCCGACCTATTCGTTTGGGATCGACTAGTTGAATACATCCAGAATATTGACGTGCTAGTTAACAACGCTGCCGTAATCGACGTGGATAATCCAAGAAACACCATTACCACTAACACAATAGCCTTGATCGAATGGTCCATGAAATTCTCCGAACACACAAGATTGGATAAGTGCGGGCACGGCGGTACTATTATTAATGTGGCTTCAGTGACTGGACATTGGGTGGCACCATTTTTCCCGGCCTACATAGCATCGAAATATGGCGTAGTCGGGTTCTCTAAATCATTTGGCCATGCATATAATTATAAATCAACTGGTGTGAGGGTCGTGGCTTTATGCCCAAGTTTCACGTTAACTCCATTGGTATTCACGAAAATTGTTTCGGATGAGCAGGAGGATGCTTTTGACAGATACAGGAGTAATCAAGTATGGCAAAGCGCTGATGAAGTTGGCATAAGAGCTGTTGAGGTCTTCAAAAATGCCGATTCGGGGACATCTTGGGACGTGGTCGGAGGAAGTCCAGCCTTCGAATCACTCTCCACCGAATATATTACCATACCTGACGAAATAATTCCTGAAGGAACATGTCAAGTTGATTGTGAATGTGACTGA

Protein

MLGYIILASLALYRIANAADEREIEGKVVVVTGAAQGIGYAIADNFLANGADLFVWDRLVEYIQNIDVLVNNAAVIDVDNPRNTITTNTIALIEWSMKFSEHTRLDKCGHGGTIINVASVTGHWVAPFFPAYIASKYGVVGFSKSFGHAYNYKSTGVRVVALCPSFTLTPLVFTKIVSDEQEDAFDRYRSNQVWQSADEVGIRAVEVFKNADSGTSWDVVGGSPAFESLSTEYITIPDEIIPEGTCQVDCECD

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

H9J355   H9JYK0   H9JWW1   H9JWW7   H9JWW0   H9J8J0   + More
H9J8I4   H9JWW6   H9J8I9   Q1HPX6   A0A194R949   A0A194R584   A0A194R4F0   H9J369   A0A212F911   A0A194QJQ6   H9J8I6   A0A0H4TDA9   A0A194R3L5   A0A1L8D6N5   A0A0L7LJP6   A0A0L7KQW0   A0A0H4TD16   I4DKW3   A0A212F936   A0A2A4JIR0   A0A2W1BSK9   A0A0F6Q0X5   S4PIB4   H9J8I5   D2SNK3   U5KC20   A0A0F6Q0W0   A0A2W1BR60   A0A2H1VSR5   A0A2W1BL60   A0A2H1VNC8   A0A0F6Q2J9   A0A2H1VR53   A0A0H4TH26   A0A0F6Q4H7   H9J354   A0A0L7K2F9   H9J353   A0A2A4JJW8   K7IM44   K7IM43   A0A232EGH1   R7V7K2   F4W474   K7IV86   A0A151WLU8   A0A067QWG1   B0XI43   G1KEF4   E2A712   A0A195ET92   A0A195E4S8   A0A0P4WG45   V8NPW0   J9EB03   H3BH95   A0A3S2NQL5   A0A195B441   R7VKN2   A0A0L7QSX6   J9HJE4   A0A2W1BRA8   A0A023F7A3   B0XCJ3   A0A0N1INL6   J9HTP4   A0A1L8DZC4   A0A2A4JPA8   A0A1L8E4I3   E9IVH7   A0A139WKA8   A0A2H1WL48   A0A088A501   A0A1S4G7W1   A0A194Q1E5   A0A182GQQ8   B0XI42   A0A2S2NV02   A0A2H8TFE7   A0A182JAH5   A0A158NDP0  

Pubmed

19121390    26354079    22118469    26227816    22651552    28756777    + More
23622113    20074338    24053512    20075255    28648823    23254933    21719571    24845553    20798317    24297900    17510324    9215903    25474469    21282665    18362917    19820115    26483478    21347285   

EMBL

BABH01036642    BABH01044234    BABH01043464    BABH01040078    BABH01043465    BABH01027538    + More
BABH01027525    DQ443276    ABF51365.1    KQ460779    KPJ12396.1    KPJ12400.1    KPJ12399.1    BABH01036649    AGBW02009651    OWR50236.1    KQ459144    KPJ03686.1    BABH01027533    KP899549    AKQ06148.1    KPJ12398.1    GEYN01000013    JAV02116.1    JTDY01000876    KOB75589.1    JTDY01007189    KOB65394.1    KP899551    AKQ06150.1    AK401931    BAM18553.1    KPJ03685.1    OWR50237.1    NWSH01001322    PCG71699.1    KZ149989    PZC75626.1    KP237899    AKD01752.1    GAIX01005455    JAA87105.1    BABH01027529    BABH01027530    EZ407131    ACX53694.1    KC007343    AGQ45608.1    KP237884    AKD01737.1    PZC75627.1    ODYU01003911    SOQ43254.1    PZC75628.1    ODYU01003471    SOQ42306.1    KP237873    AKD01726.1    SOQ43256.1    KP899550    AKQ06149.1    KP237875    AKD01728.1    JTDY01017041    KOB51868.1    BABH01036648    PCG71700.1    NNAY01004765    OXU17447.1    AMQN01019637    KB296044    ELU12356.1    GL887491    EGI71070.1    AAZX01008191    KQ982944    KYQ48859.1    KK852879    KDR14474.1    DS233256    EDS28983.1    GL437252    EFN70744.1    KQ981979    KYN31470.1    KQ979609    KYN20168.1    GDRN01065431    JAI64685.1    AZIM01002606    ETE63713.1    CH477766    EJY57916.1    AFYH01013436    AFYH01013437    AFYH01013438    AFYH01013439    RSAL01000010    RVE53718.1    KQ976625    KYM79032.1    AMQN01016860    KB292487    ELU17526.1    KQ414755    KOC61725.1    CH477964    EJY58014.1    KZ149967    PZC76155.1    GBBI01001633    JAC17079.1    DS232698    EDS44855.1    KQ461161    KPJ08013.1    EJY58013.1    GFDF01002449    JAV11635.1    NWSH01000980    PCG73283.1    GFDF01000426    JAV13658.1    GL766234    EFZ15444.1    KQ971329    KYB28353.1    ODYU01009339    SOQ53696.1    KQ459590    KPI97220.1    JXUM01081117    KQ563228    KXJ74247.1    EDS28982.1    GGMR01008279    MBY20898.1    GFXV01001021    MBW12826.1    ADTU01012731   

Proteomes

UP000005204    UP000053240    UP000007151    UP000053268    UP000037510    UP000218220    + More
UP000002358    UP000215335    UP000014760    UP000007755    UP000075809    UP000027135    UP000002320    UP000001646    UP000000311    UP000078541    UP000078492    UP000008820    UP000008672    UP000283053    UP000078540    UP000053825    UP000007266    UP000005203    UP000069940    UP000249989    UP000075880    UP000005205   

PRIDE

H9J355    H9JYK0    H9JWW1    H9JWW7    H9JWW0    H9J8J0    + More
H9J8I4    H9JWW6    H9J8I9    Q1HPX6    H9J369    H9J8I6    H9J8I5    H9J354    H9J353   

Pfam

PF00106   adh_short

Interpro

IPR002347   SDR_fam        + More
IPR036291   NAD(P)-bd_dom_sf       
IPR020904   Sc_DH/Rdtase_CS       

SUPFAM

SSF51735   SSF51735       

ProteinModelPortal

H9J355   H9JYK0   H9JWW1   H9JWW7   H9JWW0   H9J8J0   + More
H9J8I4   H9JWW6   H9J8I9   Q1HPX6   A0A194R949   A0A194R584   A0A194R4F0   H9J369   A0A212F911   A0A194QJQ6   H9J8I6   A0A0H4TDA9   A0A194R3L5   A0A1L8D6N5   A0A0L7LJP6   A0A0L7KQW0   A0A0H4TD16   I4DKW3   A0A212F936   A0A2A4JIR0   A0A2W1BSK9   A0A0F6Q0X5   S4PIB4   H9J8I5   D2SNK3   U5KC20   A0A0F6Q0W0   A0A2W1BR60   A0A2H1VSR5   A0A2W1BL60   A0A2H1VNC8   A0A0F6Q2J9   A0A2H1VR53   A0A0H4TH26   A0A0F6Q4H7   H9J354   A0A0L7K2F9   H9J353   A0A2A4JJW8   K7IM44   K7IM43   A0A232EGH1   R7V7K2   F4W474   K7IV86   A0A151WLU8   A0A067QWG1   B0XI43   G1KEF4   E2A712   A0A195ET92   A0A195E4S8   A0A0P4WG45   V8NPW0   J9EB03   H3BH95   A0A3S2NQL5   A0A195B441   R7VKN2   A0A0L7QSX6   J9HJE4   A0A2W1BRA8   A0A023F7A3   B0XCJ3   A0A0N1INL6   J9HTP4   A0A1L8DZC4   A0A2A4JPA8   A0A1L8E4I3   E9IVH7   A0A139WKA8   A0A2H1WL48   A0A088A501   A0A1S4G7W1   A0A194Q1E5   A0A182GQQ8   B0XI42   A0A2S2NV02   A0A2H8TFE7   A0A182JAH5   A0A158NDP0  

PDB

2GDZ     E-value=1.34574e-18,     Score=226

KEGG

101747118    K00069 15-hydroxyprostaglandin dehydrogenase (NAD) [EC:1.1.1.141] | (RefSeq) 15-hydroxyprostaglandin

GO

GO:0016491   GO:0004022   GO:0007567   GO:0007179   GO:0005737   GO:0016323   GO:0005654   GO:0007565   GO:0005829   GO:0045786   GO:0006693   GO:0004957   GO:0016404   GO:0070403   GO:0097070  

SignalP

Position:   1 - 18,         Likelihood:  0.932618

 

 

Length:

253

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.43156

Exp number, first 60 AAs:

0.06489

Total prob of N-in:

0.02806

outside

1  -  253

 

 

Pi

13.911364

Theta

45.231681

Tajima's D

-0.820738

CLR

127.690988

CSRT

0.177991100444978

Interpretation

Uncertain