Gene

KWMTBOMO10617

Pre Gene Modal

BGIBMGA003947

Annotation

WD_repeat-containing_protein_16_[Papilio_machaon]

Location

Bomo_Chr17(-):15845679-15860157      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.184

CDS

ATGGCATCGGAAGTGAAAAATTTAGAAGCCTACGGCATCATTGGGTTCGATGGTTCAGCAATCAGAGGCCTTAAGATCCATCCAGATTGCGAACATATCGTGTACCCAATGGGCAACAAAGTTTGCATCCAAGAGTGGAAGACAAAAAAGATGTACTTCCTCAGCGGACATTCCAACAGCGTGTCGACTGTAGCAATTTCCCCAAAAGGAACCTACGTAGGATCTGGTCAAATTAATCACATTGGATTTAAAGCGTCTGCAAAAGTTTGGGACTTCAACAAACGGGTGCAAGTCGGCAGTCATGAGTTGCACAAAGTGCGCGTGGAAGCCCTAACGTTCTCCTCTGACGAGCGCTACATGATATCCCTAGGCGGTCGGGATGATGGCTGCGTGGTGCTGTGGGACTGTCTGGCTGGAGCCGCCACTGGTACGGCAGCCGCTGCCAAACTCACAACTGGAGATGCCATAACCTTGACAGCATTGAATTTGAGAGCTAATTCTTATGTTACTGGAGGAGACTCGAATCTCCGCGTGTGGAACATTCGCGCGGAGAGCAAGAACTTGGACGTTGTGGACGTGTCCCTCGGCAAGCTGCGCAGGACCGTCCGCTGCATCGCCATCAGCAGGGACGATGCTTTCGGATACGCTGGTACTACCACGGGTGACATGATTAAGTTCTCCATAAATTACCCGCCCGACCCCTTCGCTTCCATCGCCCATTGCAAGCCGGCGCTACTGGGGTGTCTAGCCAAATGTGGTCCTTGGAAGAGAGGCAGGAAACCGGATTCAATTTGCTATAGTCAAGGAATAGAATCGATTCTGATAATGGACGACGGTTGTTTGATTGTTGGCGCCGGAGATGGCACCATCGACATCCTGGACGAAATAAACTGGAAGGGCAGCTTCCCTAAAGGCAAGATATTGGATCCGAATATACCGCACTTTAAGGCTTTGAAAACAACAAAATTAGAGGGGAGCATCACATCGTTGGAGTTGATGGAGTCACCGAAGCTCCAAGGCGCAAAGCGTCTCCTCCTCGCCGGCACGAGGACCAGCGAGATATACGCCATAGACATCGGCACGTTCGCTCCCGCCCTCGTGGTCACGTGCCATCGGTGCGCCATCAACGACATCGCTTTTCCCAGAGGCATGTCGGGCGTGTTCGCGACGGGCGGCGCGGGCGACGTGCGCGTGTGGGCTCGCGACACGTGCCAGGAACTGCTCAGGATCGTGGTGCCCAACTTCACGTGCTCCGCTCTGCTGTTCTCCGGGGACGGCAAGTCTATTGTTTCCGCATGGAACGACGGTAACATAAGAGCGTTCACTCCCCTTACCGGTCGACTGATGTACTGCATCTACAACACGCACAATAAAGGCACTTCGGCCTTGGACATGACTAATGACGGCAGGACTCTAATTTCTGGTGGATGCGAGGGACAGGTGAGAGTGTGGGACATAAGGCCCGAGAGTCAGACGTTGAAGAAGGTGCTGAAAGAGCACAAGTCCCCCGTGTCCGCTATACAAGTGTCGCCCAACAACACGGAGGCGGTCAGCGCCGGCACCGACGGCTCCTGCATCATATGGGACCTCGTGTCGCTGTCGCGTAGGCAGGTGATGTACGCGAACACGCTGTTTATGTGTGTGTGCTTCGAGCCGCGAGGGTGCCAGCTACTCACCGGGGGGACCGACCGCCGGGTCGCGTACTGGGAGACGGCCAGCGGGAACCTCGCTAGAGAACTCGAAGCGAGTAAAGCCGGCGCAATCAACGGGCTCGATATATCTAGCGACGGGGAACTGTTCGTCACCGGCGGGAATGATCAGATGGTTAAGCGACTCATTCCCGATCCTGCGGACAGAATGGAAAGCAGTCGACGTCGCCCAAAACACGTCATTTCGGATCCTCCCGATCATCCCAGGTGCCTTTAG

Protein

MASEVKNLEAYGIIGFDGSAIRGLKIHPDCEHIVYPMGNKVCIQEWKTKKMYFLSGHSNSVSTVAISPKGTYVGSGQINHIGFKASAKVWDFNKRVQVGSHELHKVRVEALTFSSDERYMISLGGRDDGCVVLWDCLAGAATGTAAAAKLTTGDAITLTALNLRANSYVTGGDSNLRVWNIRAESKNLDVVDVSLGKLRRTVRCIAISRDDAFGYAGTTTGDMIKFSINYPPDPFASIAHCKPALLGCLAKCGPWKRGRKPDSICYSQGIESILIMDDGCLIVGAGDGTIDILDEINWKGSFPKGKILDPNIPHFKALKTTKLEGSITSLELMESPKLQGAKRLLLAGTRTSEIYAIDIGTFAPALVVTCHRCAINDIAFPRGMSGVFATGGAGDVRVWARDTCQELLRIVVPNFTCSALLFSGDGKSIVSAWNDGNIRAFTPLTGRLMYCIYNTHNKGTSALDMTNDGRTLISGGCEGQVRVWDIRPESQTLKKVLKEHKSPVSAIQVSPNNTEAVSAGTDGSCIIWDLVSLSRRQVMYANTLFMCVCFEPRGCQLLTGGTDRRVAYWETASGNLARELEASKAGAINGLDISSDGELFVTGGNDQMVKRLIPDPADRMESSRRRPKHVISDPPDHPRCL

Similarity

Belongs to the ubiquitin-conjugating enzyme family.

Uniprot

H9J360   A0A2H1V1M3   A0A2W1BRA7   A0A194R589   A0A194QFG8   A0A0L7L1X0   + More
D6WDU6   A0A1W4XFJ7   A0A1B6CAI9   A0A1B6GZ07   A0A1B6EAZ5   A0A182JIS0   Q16X17   A0A182MNX8   A0A182P6D5   A0A084W2L8   A0A1Q3FTC0   A0A182RF07   W5JHF5   A0A182Y2V2   A0A182WK03   A0A182FD63   A0A182H9D7   A0A182N8C6   A0A182KPR4   A0A182I207   A0A182X6X6   A0A182Q2J0   A0A182TG91   Q7Q6D0   A0A182JP49   A0A232FJV7   E0VNS6   K7IMS4   A0A1B6H939   A0A2J7PK36   B0WJZ8   A0A067R9S7   A0A2S2RAT6   A0A1J1I5Q1   A0A0C9RBM4   J9JPU5   A0A026W117   A0A3L8DRI6   A0A195DPF7   A0A195F024   F7EJN2   A0A088ABW0   A0A151IIV8   A0A2H8TGX2   A0A2A3E3G2   A0A158P2Z5   W5N6W5   J9K3K0   A8WH02   E2AUI8   F7CBM7   E9IPF3   Q6IP46   A0A310SKH0   A0A0L7RDE9   A0A1A9X516   F4X5F8   A0A1B6KXY8   Q32NV2   A0A1A9Y2N7   A0A1L8ENA4   Q4V821   A0A1I8FUM8   A0A1B0FBC0   F6VMQ9   A0A1I8HER8   A0A1B0ABV2   A0A1I8MG49   A0A0L0CNT2   A0A1A9VDW4   S4RY15   A0A0P6JVD7   G1T9H9   A0A1U7UPI8   A0A3B4CBI1   E1BKF9   L8HV77   M3VXD4   A0A3N0XE73   A0A195BPH7   H0WLW0   F7ASK1   A0A1W2WA49   A0A267FTL1   A0A060XFT3   E2RJL4   A0A267FAQ3   A0A336M5S0   A0A384BUG4   A0A3Q7U0U6   A0A2U3VT34   A0A1B0BD10   A0A3Q7Y5Z8  

Pubmed

19121390    28756777    26354079    26227816    18362917    19820115    + More
17510324    24438588    20920257    23761445    25244985    26483478    20966253    12364791    14747013    17210077    28648823    20566863    20075255    24845553    24508170    30249741    17495919    21347285    20798317    20431018    21282665    21719571    27762356    26392545    18464734    25315136    26108605    21993624    19393038    22751099    17975172    12481130    15114417    24755649    16341006   

EMBL

BABH01036623    BABH01036624    BABH01036625    ODYU01000271    SOQ34748.1    KZ150001    + More
PZC75300.1    KQ460779    KPJ12405.1    KQ459144    KPJ03690.1    JTDY01003581    KOB69311.1    KQ971323    EFA00830.2    GEDC01026800    JAS10498.1    GECZ01002120    JAS67649.1    GEDC01002215    JAS35083.1    CH477548    EAT39137.1    AXCM01000891    ATLV01019633    KE525275    KFB44462.1    GFDL01004343    JAV30702.1    ADMH02001182    ETN63802.1    JXUM01120459    KQ566394    KXJ70162.1    KXJ70164.1    APCN01000103    AXCN02002335    AAAB01008960    EAA11930.4    NNAY01000124    OXU30748.1    DS235346    EEB15032.1    GECU01036478    JAS71228.1    NEVH01024942    PNF16695.1    DS231966    EDS29542.1    KK852652    KDR19406.1    GGMS01017964    MBY87167.1    CVRI01000042    CRK95621.1    GBYB01005700    JAG75467.1    ABLF02031919    ABLF02036200    ABLF02036211    KK107526    EZA49276.1    QOIP01000005    RLU23055.1    KQ980713    KYN14369.1    KQ981905    KYN33474.1    KQ977459    KYN02582.1    GFXV01001484    MBW13289.1    KZ288433    PBC25786.1    ADTU01007655    AHAT01000426    ABLF02030305    BC154922    AAI54923.1    GL442829    EFN62882.1    AAMC01065006    GL764503    EFZ17543.1    BC072072    AAH72072.1    KQ760382    OAD60684.1    KQ414615    KOC68786.1    GL888716    EGI58314.1    GEBQ01023687    JAT16290.1    BC108463    AAI08464.1    CM004483    OCT60791.1    BC097599    CM004482    AAH97599.1    OCT63102.1    CCAG010005996    JRES01000122    KNC34008.1    GEBF01004176    JAN99456.1    AAGW02049488    JH882969    ELR47746.1    AANG04000740    RJVU01079141    ROI15687.1    KQ976432    KYM87546.1    AAQR03080466    AAQR03080467    AAQR03080468    EAAA01000294    NIVC01000763    PAA77121.1    FR905309    CDQ78281.1    AAEX03003656    AAEX03003657    NIVC01001257    PAA70227.1    UFQT01000596    SSX25575.1    JXJN01012220   

Proteomes

UP000005204    UP000053240    UP000053268    UP000037510    UP000007266    UP000192223    + More
UP000075880    UP000008820    UP000075883    UP000075885    UP000030765    UP000075900    UP000000673    UP000076408    UP000075920    UP000069272    UP000069940    UP000249989    UP000075884    UP000075882    UP000075840    UP000076407    UP000075886    UP000075902    UP000007062    UP000075881    UP000215335    UP000009046    UP000002358    UP000235965    UP000002320    UP000027135    UP000183832    UP000007819    UP000053097    UP000279307    UP000078492    UP000078541    UP000002280    UP000005203    UP000078542    UP000242457    UP000005205    UP000018468    UP000000311    UP000008143    UP000053825    UP000091820    UP000007755    UP000092443    UP000186698    UP000095280    UP000092444    UP000002279    UP000092445    UP000095301    UP000037069    UP000078200    UP000245300    UP000001811    UP000189704    UP000261440    UP000009136    UP000011712    UP000078540    UP000005225    UP000008144    UP000215902    UP000193380    UP000002254    UP000261680    UP000286640    UP000245340    UP000092460    UP000286642   

PRIDE

H9J360   

Pfam

PF00400   WD40        + More
PF00179   UQ_con

Interpro

IPR019775   WD40_repeat_CS        + More
IPR036322   WD40_repeat_dom_sf       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR017986   WD40_repeat_dom       
IPR033015   CFAP52       
IPR001680   WD40_repeat       
IPR020472   G-protein_beta_WD-40_rep       
IPR016135   UBQ-conjugating_enzyme/RWD       
IPR000608   UBQ-conjugat_E2       
IPR023313   UBQ-conjugating_AS       
IPR011044   Quino_amine_DH_bsu       

SUPFAM

SSF50998   SSF50998        + More
SSF50978   SSF50978       
SSF54495   SSF54495       
SSF50969   SSF50969       

Gene 3D

2.130.10.10     3.10.110.10    

CDD

cd00195  UBCc

ProteinModelPortal

H9J360   A0A2H1V1M3   A0A2W1BRA7   A0A194R589   A0A194QFG8   A0A0L7L1X0   + More
D6WDU6   A0A1W4XFJ7   A0A1B6CAI9   A0A1B6GZ07   A0A1B6EAZ5   A0A182JIS0   Q16X17   A0A182MNX8   A0A182P6D5   A0A084W2L8   A0A1Q3FTC0   A0A182RF07   W5JHF5   A0A182Y2V2   A0A182WK03   A0A182FD63   A0A182H9D7   A0A182N8C6   A0A182KPR4   A0A182I207   A0A182X6X6   A0A182Q2J0   A0A182TG91   Q7Q6D0   A0A182JP49   A0A232FJV7   E0VNS6   K7IMS4   A0A1B6H939   A0A2J7PK36   B0WJZ8   A0A067R9S7   A0A2S2RAT6   A0A1J1I5Q1   A0A0C9RBM4   J9JPU5   A0A026W117   A0A3L8DRI6   A0A195DPF7   A0A195F024   F7EJN2   A0A088ABW0   A0A151IIV8   A0A2H8TGX2   A0A2A3E3G2   A0A158P2Z5   W5N6W5   J9K3K0   A8WH02   E2AUI8   F7CBM7   E9IPF3   Q6IP46   A0A310SKH0   A0A0L7RDE9   A0A1A9X516   F4X5F8   A0A1B6KXY8   Q32NV2   A0A1A9Y2N7   A0A1L8ENA4   Q4V821   A0A1I8FUM8   A0A1B0FBC0   F6VMQ9   A0A1I8HER8   A0A1B0ABV2   A0A1I8MG49   A0A0L0CNT2   A0A1A9VDW4   S4RY15   A0A0P6JVD7   G1T9H9   A0A1U7UPI8   A0A3B4CBI1   E1BKF9   L8HV77   M3VXD4   A0A3N0XE73   A0A195BPH7   H0WLW0   F7ASK1   A0A1W2WA49   A0A267FTL1   A0A060XFT3   E2RJL4   A0A267FAQ3   A0A336M5S0   A0A384BUG4   A0A3Q7U0U6   A0A2U3VT34   A0A1B0BD10   A0A3Q7Y5Z8  

PDB

5YZV     E-value=4.37497e-13,     Score=183

KEGG

101745330    no KO assigned | (RefSeq) cilia- and flagella-associated protein 52-like

GO

GO:0005930   GO:0060271   GO:0036064   GO:0031514   GO:0005524   GO:0016740   GO:0016021   GO:0005515   GO:0005737   GO:0016020   GO:0016491   GO:0000166   GO:0003906   GO:0005634   GO:0006285   GO:0019104   GO:0003824  

PANTHER

PTHR13720:SF14  

Length:

641

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0731599999999999

Exp number, first 60 AAs:

0.00999

Total prob of N-in:

0.00278

outside

1  -  641

 

 

Pi

2.772291

Theta

34.249604

Tajima's D

0

CLR

115.418107

CSRT

0.371581420928954

Interpretation

Uncertain