Silkworm Genome Informatics Database

Gene

KWMTBOMO10616

Pre Gene Modal

BGIBMGA003947

Annotation

PREDICTED:_cilia-_and_flagella-associated_protein_52_[Papilio_xuthus]

Location

Bomo_Chr17(-):15841364-15843537 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.535

CDS

ATGTGTCGCGTTGAATTTTATCTGCTCGCCAAGTTCGCTATCCAATACATTACAAAAGATCGAGCACCCGCGGATAGGAAAAGCATCACAGAATCTCCGAAAACATTGCAAGATGAATTAAAACTGCCTCTGTCTGAGAAGACCAAGGGGTCTGGCGATCGACAGTTTAAATTGCCTGGTGCTCCATCTAAGGTGGAGAAAATAGAAGCCATGGACACAAGCCGAAGCAGCATCCACTCGTGCTGTCCCTGCGAGGCTACGGCACGATCCAGCAACAAAACTCCCCCGAAAAACAGCGGGGTTAAGTGCTGCAAGCCTCCAGACGACCTGCCCACGAGGACCACAAGCAAGCAATACGTGAACGGTGACAAGAAATGA

Protein

MCRVEFYLLAKFAIQYITKDRAPADRKSITESPKTLQDELKLPLSEKTKGSGDRQFKLPGAPSKVEKIEAMDTSRSSIHSCCPCEATARSSNKTPPKNSGVKCCKPPDDLPTRTTSKQYVNGDKK

Uniprot

H9J360 A0A194R589 A0A2W1BRA7 A0A2H1VNH6 A0A194QFG8

Pubmed

19121390 26354079 28756777

EMBL

BABH01036623 BABH01036624 BABH01036625 KQ460779 KPJ12405.1 KZ150001 + More
PZC75300.1 ODYU01003491 SOQ42356.1 KQ459144 KPJ03690.1

Proteomes

UP000005204 UP000053240 UP000053268

PRIDE

H9J360

Pfam

PF00400 WD40

Interpro

IPR019775   WD40_repeat_CS        + More
IPR036322   WD40_repeat_dom_sf
IPR011047   Quinoprotein_ADH-like_supfam
IPR015943   WD40/YVTN_repeat-like_dom_sf
IPR017986   WD40_repeat_dom
IPR033015   CFAP52
IPR001680   WD40_repeat

SUPFAM

SSF50998 SSF50998 + More
SSF50978 SSF50978

Gene 3D

2.130.10.10

ProteinModelPortal

H9J360 A0A194R589 A0A2W1BRA7 A0A2H1VNH6 A0A194QFG8

KEGG

101745330 no KO assigned | (RefSeq) cilia- and flagella-associated protein 52-like

GO

PANTHER

PTHR13720:SF14

Length:

125

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00031

Exp number, first 60 AAs:

0.00031

Total prob of N-in:

0.12835

outside

1 - 125

Pi

166.407597

Theta

63.394237

Tajima's D

0.573502

CLR

0.469532

CSRT

0.538723063846808

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics