Gene

KWMTBOMO10615

Pre Gene Modal

BGIBMGA003954

Annotation

autophagy_related_protein_Atg12-like_protein_[Bombyx_mori]

Location

Bomo_Chr17(+):15837738-15839504      View in EpiBrowser

Full name

Ubiquitin-like protein ATG12       + More
Autophagy protein 12-like      

Location in the cell

Cytoplasmic   Reliability : 2.503

CDS

ATGAGTGATGAGAAACTTATAGATGAGACGCAGAGCCAATCAGTGGCTGGAATGGAAGCATTGAGAATAGAAGTTGATAACAAAGAAAATAGTGATCCATCAAAATCAGATAAATTAAAAGTCGACATTCTACTGAAAGCGACAGGGAATGCTCCTATAATGAAGAAAAAAAAATGGGCTGTTGATGCTGAAAAGCCTATTGGATGGATTATGGAGTTTGTAAAGAAATATCTCAAACTTGAAGCAGATGAGAAATTATTCCTGTATGTGAATCAGACTTTTGCGCCATCACCAGATCAGATTGTCAGGAATCTTTATGAGTGCTTCGGTACAGATGGGAAACTGGTCCTGCATTACTGCAAAAGCCAAGCTTGGGGCTGA

Protein

MSDEKLIDETQSQSVAGMEALRIEVDNKENSDPSKSDKLKVDILLKATGNAPIMKKKKWAVDAEKPIGWIMEFVKKYLKLEADEKLFLYVNQTFAPSPDQIVRNLYECFGTDGKLVLHYCKSQAWG

Description

Ubiquitin-like protein involved in autophagic vesicle formation.
Required for autophagy.

Subunit

Forms a conjugate with ATG5.
Conjugated to autophagy protein 5-like.

Similarity

Belongs to the ATG12 family.

Keywords

Autophagy   Complete proteome   Cytoplasm   Isopeptide bond   Reference proteome   Ubl conjugation pathway  

Feature

chain  Autophagy protein 12-like

Uniprot

B7TYK6   A0A2H4THJ6   A0A194QJR1   A0A194R959   A0A1E1WG23   E3UKI7   + More
S4P8R8   A0A2H1VRJ5   A0A212FM20   A0A3S2PFJ7   A0A1Y1JX77   A0A3R7MWV4   A0A2J7PK16   A0A2A4IWM0   A0A067RJ81   N6TGH1   A0A1W4WQJ9   D2A2F4   E0VIX4   A0A1B0CQH8   T1GXB8   A0A0M9AAK2   A0A0K8TT72   A0A3L8DQG2   A0A195EYV1   A0A0J7KUV2   E2AUI7   A0A195BPX8   A0A151WYY8   F4X5F7   A0A158P2Z6   A0A195DNC2   A0A151IJ88   A0A182TW17   Q7PUA6   A0A182I2W8   A0A310SU65   A0A3Q8C4T0   A0A182WZ38   A0A182VIQ3   A0A182NKN1   A0A182Q5A9   A0A2A3E264   V9IC89   A0A154PR43   A0A182K0Y0   A0A182P211   Q16WV3   A0A182G1M7   A7RKL8   A0A182WJL4   W4XIA0   A0A182RTZ3   A0A182MDR9   W5JS99   T2MIE8   A0A182XYI5   A0A1S3ILW0   Q9VTU1   A0A0S2C4V5   A0A232FJU9   B3M7W3   A0A034WSG9   A0A1B6EEV5   A0A034WNZ3   A0A0C9REQ0   A0A1D1VQ84   A0A1W4UHQ4   K7IMS5   A0A0K8VR49   B4HFJ0   A0A0R1DXC9   A0A0Q5U4C9   B4QR60   A0A0A1XDS4   A0A1B6K0L9   A0A0N7Z8Y5   T1IDR9   B4KZ48   I3MHX5   A0A1J1IH09   A0A3M6TTA0   A0A0V0G5I7   A0A1B6EZR5   A0A069DNK0  

Pubmed

19121390    19470186    28756777    26354079    23622113    22118469    + More
28004739    24845553    23537049    18362917    19820115    20566863    26369729    30249741    20798317    21719571    21347285    9087549    12364791    14747013    17210077    17510324    26483478    17615350    20920257    23761445    24065732    25244985    10731132    12537572    15296714    28648823    17994087    25348373    27649274    20075255    17550304    22936249    25830018    27129103    30382153    26334808   

EMBL

BABH01036622    FJ416329    ACJ46063.1    KY217730    KZ150001    ATY75509.1    + More
PZC75301.1    KQ459144    KPJ03691.1    KQ460779    KPJ12406.1    GDQN01005894    GDQN01005233    JAT85160.1    JAT85821.1    HM449861    ADO32996.1    GAIX01004074    JAA88486.1    ODYU01003994    SOQ43418.1    AGBW02007658    OWR54795.1    RSAL01000054    RVE50000.1    GEZM01100640    JAV52828.1    QCYY01002281    ROT71557.1    NEVH01024942    PNF16673.1    NWSH01005683    PCG64059.1    KK852652    KDR19407.1    APGK01028434    KB740687    KB632166    ENN79499.1    ERL89308.1    KQ971338    EFA02034.1    DS235212    EEB13330.1    AJWK01023566    CAQQ02374563    KQ435714    KOX79229.1    GDAI01000498    JAI17105.1    QOIP01000005    RLU22675.1    KQ981905    KYN33475.1    LBMM01003014    KMQ94071.1    GL442829    EFN62881.1    KQ976432    KYM87547.1    KQ982649    KYQ52996.1    GL888716    EGI58313.1    ADTU01007655    KQ980713    KYN14368.1    KQ977459    KYN02583.1    AAAB01000105    AAAB01008807    EAA01830.4    EAA04308.2    APCN01000188    KQ760382    OAD60683.1    KY053225    ATX63060.1    AXCN02000551    KZ288433    PBC25787.1    JR039537    JR039538    AEY58743.1    AEY58744.1    KQ435010    KZC13748.1    CH477553    EAT39094.1    JXUM01137329    KQ568562    KXJ68958.1    DS469516    EDO48009.1    AAGJ04061855    AXCM01006462    ADMH02000578    ETN65795.1    HAAD01005473    CDG71705.1    AE014296    BT022374    BT022397    KT071608    ALN39173.1    NNAY01000124    OXU30738.1    CH902618    EDV38836.1    GAKP01001690    JAC57262.1    GEDC01000825    JAS36473.1    GAKP01001691    JAC57261.1    GBYB01006805    JAG76572.1    BDGG01000009    GAV03121.1    GDHF01011006    JAI41308.1    CH480815    EDW41221.1    CM000159    KRK01724.1    CH954178    KQS43829.1    CM000363    CM002912    EDX10190.1    KMY99167.1    GBXI01005679    JAD08613.1    GECU01002716    JAT04991.1    GDKW01002051    JAI54544.1    ACPB03000202    CH933809    EDW17845.1    AGTP01101938    AGTP01101939    CVRI01000047    CRK97721.1    RCHS01002985    RMX44454.1    GECL01003172    JAP02952.1    GECZ01026458    JAS43311.1    GBGD01003514    JAC85375.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000007151    UP000283053    UP000283509    + More
UP000235965    UP000218220    UP000027135    UP000019118    UP000030742    UP000192223    UP000007266    UP000009046    UP000092461    UP000015102    UP000053105    UP000279307    UP000078541    UP000036403    UP000000311    UP000078540    UP000075809    UP000007755    UP000005205    UP000078492    UP000078542    UP000075902    UP000007062    UP000075840    UP000076407    UP000075903    UP000075884    UP000075886    UP000242457    UP000076502    UP000075881    UP000075885    UP000008820    UP000069940    UP000249989    UP000001593    UP000075920    UP000007110    UP000075900    UP000075883    UP000000673    UP000076408    UP000085678    UP000000803    UP000215335    UP000007801    UP000186922    UP000192221    UP000002358    UP000001292    UP000002282    UP000008711    UP000000304    UP000015103    UP000009192    UP000005215    UP000183832    UP000275408   

PRIDE

B7TYK6    Q9VTU1   

Pfam

PF04110   APG12

Interpro

IPR029071   Ubiquitin-like_domsf        + More
IPR007242   Atg12       

SUPFAM

SSF54236   SSF54236       

CDD

cd01612  APG12_C

ProteinModelPortal

B7TYK6   A0A2H4THJ6   A0A194QJR1   A0A194R959   A0A1E1WG23   E3UKI7   + More
S4P8R8   A0A2H1VRJ5   A0A212FM20   A0A3S2PFJ7   A0A1Y1JX77   A0A3R7MWV4   A0A2J7PK16   A0A2A4IWM0   A0A067RJ81   N6TGH1   A0A1W4WQJ9   D2A2F4   E0VIX4   A0A1B0CQH8   T1GXB8   A0A0M9AAK2   A0A0K8TT72   A0A3L8DQG2   A0A195EYV1   A0A0J7KUV2   E2AUI7   A0A195BPX8   A0A151WYY8   F4X5F7   A0A158P2Z6   A0A195DNC2   A0A151IJ88   A0A182TW17   Q7PUA6   A0A182I2W8   A0A310SU65   A0A3Q8C4T0   A0A182WZ38   A0A182VIQ3   A0A182NKN1   A0A182Q5A9   A0A2A3E264   V9IC89   A0A154PR43   A0A182K0Y0   A0A182P211   Q16WV3   A0A182G1M7   A7RKL8   A0A182WJL4   W4XIA0   A0A182RTZ3   A0A182MDR9   W5JS99   T2MIE8   A0A182XYI5   A0A1S3ILW0   Q9VTU1   A0A0S2C4V5   A0A232FJU9   B3M7W3   A0A034WSG9   A0A1B6EEV5   A0A034WNZ3   A0A0C9REQ0   A0A1D1VQ84   A0A1W4UHQ4   K7IMS5   A0A0K8VR49   B4HFJ0   A0A0R1DXC9   A0A0Q5U4C9   B4QR60   A0A0A1XDS4   A0A1B6K0L9   A0A0N7Z8Y5   T1IDR9   B4KZ48   I3MHX5   A0A1J1IH09   A0A3M6TTA0   A0A0V0G5I7   A0A1B6EZR5   A0A069DNK0  

PDB

4NAW     E-value=1.05137e-31,     Score=334

KEGG

100216353    K08336 ubiquitin-like protein ATG12 | (RefSeq) autophagy related protein Atg12-like protein

PATHWAY

04068    FoxO signaling pathway - Bombyx mori (domestic silkworm)
04136    Autophagy - other - Bombyx mori (domestic silkworm)
04140    Autophagy - animal - Bombyx mori (domestic silkworm)

GO

GO:0005737   GO:0000045   GO:0006914   GO:0000422   GO:0034274   GO:0019776   GO:0006501   GO:0034045   GO:0031386   GO:0035096   GO:0061723   GO:0009267   GO:0016236   GO:0005776   GO:0016020   GO:0016491   GO:0000166   GO:0003906   GO:0005634   GO:0006285   GO:0019104   GO:0003824  

PANTHER

PTHR13385  

Subcellular location

Cytoplasm  

Length:

126

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0

Total prob of N-in:

0.19143

outside

1  -  126

 

 

Pi

140.033886

Theta

127.70848

Tajima's D

-0.88801

CLR

0.003213

CSRT

0.156042197890105

Interpretation

Uncertain