SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10611
Pre Gene Modal
BGIBMGA003951
Annotation
hypothetical_protein_KGM_05135_[Danaus_plexippus]
Location in the cell
Mitochondrial   Reliability : 1.074 Nuclear   Reliability : 1.191 PlasmaMembrane   Reliability : 1.005
 

Sequence

CDS
ATGCACGCGGTGGGACTACACTCCGCGCTCGCCATCCGCCGCGAGCGGAAGCGCCGCGCCGAGCAGCAGCGCGCTCGCGAGCGCCGCTACTCGCTGCAGTCCTCCGAGTCCGGCCTCACCAGCCCGCACTGCTCCACCGGCAGCTTGGAGAGGCGCCGCTACCGGAACACCAGGGCCGCCGAAAATGAAGTCGTCTCCTCCGTTGGCATGCTGCACCTCGGTGTCGTCTTCCTCGTACTCGGCGTCTTCCTGGTCGCCAGCGGATGGTTGCCTGACGACGTCACCTCTTGGAGTAGTATCGGCTCCGTCAGCTGGTTCAACGAGCTGGTCTGCTCGGGTTTGTTCGCGCTTGGGATCGGGATATTTCTGATCGCTCTGCACAAGTACCTCACCAAGAGCGAGGAGGAGGCGCTAGAGGACTATGTGCAGAGACAGCTAACGAGGTCACGATCAGGGCACCGGCTGGAGAGGGACGCGGAGACAGGCGGCATGCACACGAAGAACGCGCGGCGAGCCCGCGCCACCGAGGTGCTGCCGGATGCGACCTCCGAGACGTACACGCAGCCCCCCGAGCGCGCGCACGGGTTCGTCAATGCTCTGGCGGTGAACGGCGACGCTCTGCGGGAGATGCCGCTCGAGCAAATCGCGGAGGAGGAGGTATCGGTGACGTCTGAGTGCGACCGGCGGCTCGGCAAGTTCAACAAGGACACGTACTCGACCCCGTCCGTGGCGCCCAGCCTGAGCCCGGGCTCGCCGTCCGACACGCGGGAGCTGCTCTCCGACGGGCGCTATATGGTCATGTCGCGCATATGA
Protein
MHAVGLHSALAIRRERKRRAEQQRARERRYSLQSSESGLTSPHCSTGSLERRRYRNTRAAENEVVSSVGMLHLGVVFLVLGVFLVASGWLPDDVTSWSSIGSVSWFNELVCSGLFALGIGIFLIALHKYLTKSEEEALEDYVQRQLTRSRSGHRLERDAETGGMHTKNARRARATEVLPDATSETYTQPPERAHGFVNALAVNGDALREMPLEQIAEEEVSVTSECDRRLGKFNKDTYSTPSVAPSLSPGSPSDTRELLSDGRYMVMSRI

Summary

EMBL
BABH01036614    AGBW02007658    OWR54792.1    ODYU01003575    SOQ42508.1    KZ150001    + More
PZC75306.1    KQ458903    KPJ04567.1    KQ460779    KPJ12410.1    LBMM01000647    KMQ97898.1    KQ981798    KYN35739.1    ADTU01017868    GL443425    EFN62102.1    KQ977901    KYM98918.1    KQ976748    KYM75309.1    PYGN01000263    PSN49751.1    KQ983097    KYQ47490.1    GBYB01014779    JAG84546.1    KQ435732    KOX77503.1    AAZX01002604    NEVH01016330    PNF25619.1    UFQT01000171    SSX21088.1    GL888090    EGI67670.1    GL449769    EFN82070.1    GL761703    EFZ22902.1    ATLV01026995    KE525421    KFB53725.1    AXCP01000261    AXCP01000262    CH477657    EAT37689.1    AXCN02000684    UFQS01002095    UFQT01002095    SSX13222.1    SSX32661.1    AXCM01001089    AAAB01008980    EAU76033.2    ADMH02001427    ETN62573.1    KK852804    KDR16204.1    KK107503    EZA49594.1    KQ414669    KOC64478.1    AJWK01008529    AJWK01008530    AJWK01008531    GBRD01011686    JAG54138.1    KK854837    PTY19134.1    GEBQ01007398    JAT32579.1    KQ971357    EFA13155.2    CH902628    KPU75347.1    APGK01058729    KB741291    ENN70568.1    KB631579    ERL84442.1    CH933807    KRG03813.1    KRG03814.1    KRG03815.1    KRG03816.1    CH954177    KQS71064.1    DS235170    EEB12830.1    BT150085    AE013599    AGK45258.1    EAL24627.2    CH891641    KRK05093.1    KRK05094.1    GBXI01012269    GBXI01005373    JAD02023.1    JAD08919.1    GBXI01011785    JAD02507.1    GDHF01025182    JAI27132.1    NNAY01002181    OXU21858.1    GAKP01004346    JAC54606.1    GAMC01008611    GAMC01008610    JAB97945.1    GDHF01010118    JAI42196.1    CH475486    KRT05156.1    JRES01000300    KNC32619.1    OUUW01000010    SPP85586.1   
Pfam
PF00075   RNase_H
Interpro
IPR000048   IQ_motif_EF-hand-BS        + More
IPR033207   CCP110       
IPR036397   RNaseH_sf       
IPR002156   RNaseH_domain       
IPR012337   RNaseH-like_sf       
IPR000719   Prot_kinase_dom       
IPR017441   Protein_kinase_ATP_BS       
IPR011009   Kinase-like_dom_sf       
SUPFAM
SSF53098   SSF53098        + More
SSF56112   SSF56112       
Gene 3D

Ontologies

Topology

Length:
270
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
45.3353
Exp number, first 60 AAs:
0.00328
Total prob of N-in:
0.96329
inside
1  -  67
TMhelix
68  -  90
outside
91  -  104
TMhelix
105  -  127
inside
128  -  270
 
 

Population Genetic Test Statistics

Pi
169.752676
Theta
127.734042
Tajima's D
1.156778
CLR
73.406656
CSRT
0.701414929253537
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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