Gene

KWMTBOMO10598

Annotation

PREDICTED:_putative_nuclease_HARBI1_[Solenopsis_invicta]

Location

Bomo_Chr17(+):14971157-14972155      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.314

CDS

ATGCAAATTACTGTTGGCGATTTCAGTGGTGTTCACCAAACGACAGCAGGAAAAGCTATTAAAAAAGTTACCGAAGCGATTGCATCAAGACGATGCCGATATATAATGCTGCAAGATTCTGAAGAAGACAAAAGGAAACATCAGAATGGATTCTACAATATGGCTAGGTTTCCTCTAGTGTATGGAGCCCTTGATTGTACTCATATACGGATTCAATCACCAGGTGGACAAAATGCAGAGTGTTTTAGGAATAGGAAAGGCTATTTTTCCTTAAATACTCAGGCAGTTTGCAATTCAGACTTGAAATTTTCGAATATTGTGGCTAGATGGCCGGGGGCAAGCCATGACAGTACCATTTTTCAAAATAGCAGACTCTGTGCTATTTTTGAATCAGGTCAGATGGGCCAACTAGTTCTTCTCGGTGATGCTGGATATCCGAACAAAAAATATCTATTGACACCTCTACAAAATCCTGTCACAGAAGCTGAGAAACTATACAATGAGTCTCATATACGAACTCGGAATTGTATAGAGAGGGCATTTGGCATATGGAAGAGACGGTTTCCAGTTTTGTCATTGGGAATTAAGACCAAAGTTGAACTGGTACAAGATATCATTGTTGCAACAGCCATTTTACACAACTTGTGTATCAAGCATAATGATGTCATGCCTAACTTAGATGTTAACTTAGAAAATATCATTGATGTAACTGGCAGTGATAACAACCAAGATACCACCCTCAGCAGCAATTACAGCAACAATAGTTATAGAAGGCAAATGTTAATTGACAATTACTTTAGCAGTTTACAATAG

Protein

MQITVGDFSGVHQTTAGKAIKKVTEAIASRRCRYIMLQDSEEDKRKHQNGFYNMARFPLVYGALDCTHIRIQSPGGQNAECFRNRKGYFSLNTQAVCNSDLKFSNIVARWPGASHDSTIFQNSRLCAIFESGQMGQLVLLGDAGYPNKKYLLTPLQNPVTEAEKLYNESHIRTRNCIERAFGIWKRRFPVLSLGIKTKVELVQDIIVATAILHNLCIKHNDVMPNLDVNLENIIDVTGSDNNQDTTLSSNYSNNSYRRQMLIDNYFSSLQ

Uniprot

N6TYG1   N6UD62   A0A1Y1MC35   A0A1Y1MXP7   A0A1Y1MZ45   A0A3S2P3B6   + More
J9KF22   A0A1I8NJZ2   A0A0J7K466   A0A1Y1KLA7   A0A1Y1M7D0   U4U2V2   A0A1Y1MBC4   A0A1B6KEC0   A0A1B6MNX0   J9JTM0   A0A3S2LMD2   J9KLH0   X1X0S1   X1XKK1   A0A3S2KYY9   J9JZ87   A0A1Y1KVM8   A0A1Y1KVK5   U4U597   A0A1Y1KRW4   J9L1W5   J9JXP4   N6TYP6   A0A1Y1KQW0   A0A1Y1LJF3   A0A2P8Z014   A0A2P8Z808   J9JJW2   A0A0L7LT10   A0A0A9ZIH6   X1XI09   X1WPK8   X1WRT3   J9M943   C4WUD0   J9LL64   J9L523   A0A1Y1M620   J9LUG4   J9LYS1   J9JM90   A0A2S2NS44   J9KLG9   J9M2S7   D6WYB2   J9LXS6   J9KWE0   A0A146L3K0   X1WZQ8   A0A0A9YXL9   J9M4Q3   A0A1Y1KFZ4   J9KQN6   A0A2R2MN13   H9JKZ1   A0A2A4IXD7   N6TRS6   J9K8M3   J9L0T4   X1WR39   C4WVD2   U4U4Y9   A0A2S2NKK2   A0A0L7L4N7   A0A1S3JPJ3   A0A1Y1N6P0   A0A2P8XG26   A0A0L7L248   U4U124   A0A1B6M7R9   A0A2S2Q8E2   J9L1A7   J9JZI3   J9JMB5   J9LCM8   J9KK24   A0A2H1VXT4   A0A158NUI4   S4PD89   J9M1Z2   A0A3S2TC00   J9KAY9   D7EKQ7   A0A293LX60   A0A2R5LJM8   A0A3Q0J0W5   J9LHW2   A0A0L7KXL2   A0A2P8YDT7   J9LWR9  

Pubmed

23537049    28004739    25315136    29403074    26227816    25401762    + More
18362917    19820115    26823975    19121390    21347285    23622113   

EMBL

APGK01006977    KB737050    ENN83098.1    APGK01040149    KB740975    ENN76582.1    + More
GEZM01035464    GEZM01035462    JAV83213.1    GEZM01017837    GEZM01017836    GEZM01017835    JAV90434.1    GEZM01017851    GEZM01017841    GEZM01017840    JAV90428.1    RSAL01001934    RVE40628.1    ABLF02061340    LBMM01014280    KMQ85248.1    GEZM01080383    JAV62179.1    GEZM01038551    JAV81614.1    KB631844    ERL86663.1    GEZM01038550    JAV81615.1    GEBQ01030196    JAT09781.1    GEBQ01002329    JAT37648.1    ABLF02029655    ABLF02030019    RSAL01000057    RVE49808.1    ABLF02022234    ABLF02058482    ABLF02020738    ABLF02020736    RSAL01000416    RVE41817.1    ABLF02036739    GEZM01078165    GEZM01078164    GEZM01078163    GEZM01078159    GEZM01078156    GEZM01078154    GEZM01078151    GEZM01078148    GEZM01078146    GEZM01078143    GEZM01078142    GEZM01078141    GEZM01078133    JAV62927.1    GEZM01078173    GEZM01078172    GEZM01078170    GEZM01078167    GEZM01078166    GEZM01078160    GEZM01078150    GEZM01078147    GEZM01078145    GEZM01078139    GEZM01078138    GEZM01078136    GEZM01078135    GEZM01078134    JAV62907.1    KB632043    ERL88242.1    GEZM01078171    GEZM01078169    GEZM01078168    GEZM01078162    GEZM01078161    GEZM01078158    GEZM01078157    GEZM01078155    GEZM01078153    GEZM01078152    GEZM01078149    GEZM01078144    GEZM01078140    GEZM01078137    JAV62920.1    ABLF02019815    ABLF02019816    ABLF02008545    APGK01005289    KB736163    ENN83248.1    GEZM01076717    JAV63704.1    GEZM01054249    JAV73782.1    PYGN01000260    PSN49845.1    PYGN01000153    PSN52639.1    ABLF02011428    JTDY01000151    KOB78582.1    GBHO01000839    JAG42765.1    ABLF02012281    ABLF02058185    ABLF02040544    ABLF02041461    ABLF02002513    ABLF02017542    ABLF02006541    ABLF02042859    AK341014    BAH71500.1    ABLF02019988    ABLF02066411    ABLF02035722    GEZM01039795    GEZM01039794    GEZM01039793    GEZM01039792    GEZM01039791    GEZM01039790    GEZM01039789    JAV81183.1    ABLF02024993    ABLF02024998    ABLF02025000    ABLF02012895    ABLF02016431    GGMR01007355    MBY19974.1    ABLF02017360    ABLF02011053    KQ971356    EFA09128.1    ABLF02003846    ABLF02016012    ABLF02055237    GDHC01016852    JAQ01777.1    ABLF02008641    ABLF02011808    GBHO01005857    GDHC01007230    JAG37747.1    JAQ11399.1    ABLF02016385    GEZM01088054    JAV58326.1    ABLF02034876    BABH01011318    NWSH01005652    PCG64078.1    APGK01006027    KB736544    ENN83189.1    ABLF02006612    ABLF02003216    ABLF02063305    AK341464    BAH71852.1    KB632031    ERL88142.1    GGMR01005102    MBY17721.1    JTDY01002978    KOB70380.1    GEZM01016480    JAV91267.1    PYGN01002266    PSN30960.1    JTDY01003471    KOB69505.1    KB631387    ERL84281.1    GEBQ01008002    JAT31975.1    GGMS01004279    MBY73482.1    ABLF02008686    ABLF02007265    ABLF02018378    ABLF02018381    ABLF02010299    ABLF02038239    ODYU01004776    SOQ45014.1    ADTU01026491    GAIX01003761    JAA88799.1    ABLF02028680    RSAL01000514    RVE41493.1    ABLF02015906    DS497765    EFA11633.1    GFWV01008543    MAA33272.1    GGLE01005627    MBY09753.1    ABLF02004778    ABLF02026443    ABLF02026444    ABLF02026454    JTDY01004680    KOB67875.1    PYGN01000674    PSN42418.1    ABLF02033619   

Proteomes

UP000019118    UP000283053    UP000007819    UP000095301    UP000036403    UP000030742    + More
UP000245037    UP000037510    UP000007266    UP000085678    UP000005204    UP000218220    UP000005205    UP000079169   

PRIDE

H9JKZ1   

Pfam

PF13359   DDE_Tnp_4        + More
PF13843   DDE_Tnp_1_7
PF16087   DUF4817
PF00665   rve
PF00400   WD40

Interpro

IPR027806   HARBI1_dom        + More
IPR026103   HARBI1_animal       
IPR029526   PGBD       
IPR032135   DUF4817       
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       

SUPFAM

SSF53098   SSF53098        + More
SSF50978   SSF50978       

Gene 3D

3.30.420.10     2.130.10.10    

ProteinModelPortal

N6TYG1   N6UD62   A0A1Y1MC35   A0A1Y1MXP7   A0A1Y1MZ45   A0A3S2P3B6   + More
J9KF22   A0A1I8NJZ2   A0A0J7K466   A0A1Y1KLA7   A0A1Y1M7D0   U4U2V2   A0A1Y1MBC4   A0A1B6KEC0   A0A1B6MNX0   J9JTM0   A0A3S2LMD2   J9KLH0   X1X0S1   X1XKK1   A0A3S2KYY9   J9JZ87   A0A1Y1KVM8   A0A1Y1KVK5   U4U597   A0A1Y1KRW4   J9L1W5   J9JXP4   N6TYP6   A0A1Y1KQW0   A0A1Y1LJF3   A0A2P8Z014   A0A2P8Z808   J9JJW2   A0A0L7LT10   A0A0A9ZIH6   X1XI09   X1WPK8   X1WRT3   J9M943   C4WUD0   J9LL64   J9L523   A0A1Y1M620   J9LUG4   J9LYS1   J9JM90   A0A2S2NS44   J9KLG9   J9M2S7   D6WYB2   J9LXS6   J9KWE0   A0A146L3K0   X1WZQ8   A0A0A9YXL9   J9M4Q3   A0A1Y1KFZ4   J9KQN6   A0A2R2MN13   H9JKZ1   A0A2A4IXD7   N6TRS6   J9K8M3   J9L0T4   X1WR39   C4WVD2   U4U4Y9   A0A2S2NKK2   A0A0L7L4N7   A0A1S3JPJ3   A0A1Y1N6P0   A0A2P8XG26   A0A0L7L248   U4U124   A0A1B6M7R9   A0A2S2Q8E2   J9L1A7   J9JZI3   J9JMB5   J9LCM8   J9KK24   A0A2H1VXT4   A0A158NUI4   S4PD89   J9M1Z2   A0A3S2TC00   J9KAY9   D7EKQ7   A0A293LX60   A0A2R5LJM8   A0A3Q0J0W5   J9LHW2   A0A0L7KXL2   A0A2P8YDT7   J9LWR9  

KEGG

105842814    K23222 nuclease HARBI1 [EC:3.1.-.-] | (RefSeq) uncharacterized LOC105842814

GO

GO:0016021   GO:0003676   GO:0015074  

Length:

270

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01127

Exp number, first 60 AAs:

0.00108

Total prob of N-in:

0.01826

outside

1  -  270

 

 

Pi

135.480114

Theta

128.373979

Tajima's D

0.281837

CLR

16.873035

CSRT

0.453277336133193

Interpretation

Uncertain