Gene

KWMTBOMO10595  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003910

Annotation

PREDICTED:_pyridoxal-dependent_decarboxylase_domain-containing_protein_1_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr17(-):14942388-14949536      View in EpiBrowser

Full name

Pyridoxal-dependent decarboxylase domain-containing protein 1      

Location in the cell

Cytoplasmic   Reliability : 1.611 Nuclear   Reliability : 1.745

CDS

ATGGGAGATGCATCAGCTTCGGACACCGAGTCCAATAAACCTAGTCCTATCAACGAACCACATTTAGAACTGGAGCGGCGTCCCTTCGGTGGGCTCGAGTTTCAAGTATCTGAAGTAGTAGAAAGGCTCGAAGCCGGGGTTAATGCACAGGATGCTGCCGATGACGAGAAAAAGCGTGAACCGCGTAAAATCAGTACCGGCTTTTTTGAACCCGAAGAAACACCAATGGATGAAATTCTGAAAATTTTAGAGGAACTAGTGATCAAGACCGACCCTAGTTGCGAGAGCTTAGAGCCTCCGCTGTTGCCGACGGATGCGGTGACTCGTGCGGCCATTCTTTCTCATAGTATTTCAGCATTATTTGGTCGCTTAGAAAGAAGTCACGCAGCGCGCCTCGGTACTCACATAGCAAGCGAAACGACTCGATGGATGGCTCACATGTTTAGGCTATCAGACTACAATGCATATTATCATCAAGAACAGCTTGAAGGTCTTGTGCGGGTCACAAGGATGCTGCTCCATCACAGATACCCTAGATATTTAGAAGATGGAGCATTGGCGTTTGCAAATCGTCTACCCTGCATATACAGTTGCGTTGCGAGTCCACTGGGGATCGTTCAGCACCTCTGCAGACAGCTGGGCTTACCGCTGGCTTGTGTTAGGCCAGTTCCAGTAAATCCTTCAGGTCGAGGAATGGACATAGACGCGTTAGAGAGGCTATGTGACGAGGACGTCGCCGCCAATCGCACCCCGCTGCTGGTGCTGGGAGAAGTGGGAGCTCCGCCCCTAGGTTGGGGCACTCCGCTGTACACCCTTGGTGAAATCTGCGCTAGAAGAAACCTGCACCTACACGTCAGAGGGCACGCGTTAGCCTTACCTGGTGCCAGCCTGAAAGAGCAGACTTACAGTATACCGGACTCGTTGACGCTGACTCCAGGACCGTGGTTCGGCGTGCCGGGCCTGCCTACTGTCACGTTTTACAAAATTCCAGAATCGGTAACAGCCAACGATCAATCTAAGGGCGTTAACGCGGTAAGTGAAGAATATTCAATTGTACAATAG

Protein

MGDASASDTESNKPSPINEPHLELERRPFGGLEFQVSEVVERLEAGVNAQDAADDEKKREPRKISTGFFEPEETPMDEILKILEELVIKTDPSCESLEPPLLPTDAVTRAAILSHSISALFGRLERSHAARLGTHIASETTRWMAHMFRLSDYNAYYHQEQLEGLVRVTRMLLHHRYPRYLEDGALAFANRLPCIYSCVASPLGIVQHLCRQLGLPLACVRPVPVNPSGRGMDIDALERLCDEDVAANRTPLLVLGEVGAPPLGWGTPLYTLGEICARRNLHLHVRGHALALPGASLKEQTYSIPDSLTLTPGPWFGVPGLPTVTFYKIPESVTANDQSKGVNAVSEEYSIVQ

Cofactor

pyridoxal 5'-phosphate

Similarity

Belongs to the group II decarboxylase family.

Keywords

Decarboxylase   Lyase   Pyridoxal phosphate  

Feature

chain  Pyridoxal-dependent decarboxylase domain-containing protein 1

Uniprot

A0A2H1VBZ8   A0A2A4J667   A0A212EL63   A0A2W1BRM4   H9J323   A0A1E1VZP7   + More
A0A194PPV2   A0A0N1PGF8   A0A2Z5U729   A0A067RWL3   A0A2J7PLV7   A0A2P8Z2L2   A0A1Y1JUJ8   D6WYJ0   A0A0T6AV11   A0A1B6CKL1   U4USC4   E2BTH1   A0A087ZQM4   A0A154P8L0   A0A2A3E3X9   F4WTZ8   A0A158P110   A0A151J1V8   A0A0L7QPP3   A0A1B6F8Q9   E2AXN4   N6TC82   A0A310SS32   A0A151WWY6   A0A195AUQ0   A0A1B6HIF9   A0A0M9A8V4   A0A232EYQ3   A0A3L8E2A5   A0A0C9QZX3   K7IZ82   A0A0V0G4W6   A0A069DWD2   E0VSR3   A0A0J7KNC7   A0A224X8N3   A0A146LA38   A0A146MII3   A0A026WER0   A0A1W5AJ52   A0A1W5AIL0   A0A1W5AHF4   A0A1W5AAM3   A0A2G8L6F9   A0A1L8EXK7   Q6DF78   A0A1S3K002   F7BG81   F6R560   A0A1B0C9Q3   R7UV22   A0A1L8EQ88   A0A1L8E297   A0A2G8JCI3   A0A1L8E2C1   A0A091VF94   A0A093I442   A0A0B8RXL8   U3FX57   B0W7U7   A0A2D4KCK1   H9G850   A0A1V4KCN6   A0A1U7RXI7   G3WAL5   A0A151N1D4   A0A2I0LRE4   U3IC71   A0A2D4LB04   A0A094KJB4   A0A091PZP3   A0A093HSP3   A0A091P907   A0A091HEZ4   A0A3B3QA03   A0A091KW96   A0A1I8P2F7  

EC Number

4.1.1.-

Pubmed

22118469    28756777    19121390    26354079    24845553    29403074    + More
28004739    18362917    19820115    23537049    20798317    21719571    21347285    28648823    30249741    20075255    26334808    20566863    26823975    24508170    29023486    27762356    20431018    17495919    23254933    25476704    23915248    21881562    21709235    22293439    23371554    23749191    29240929   

EMBL

ODYU01001747    SOQ38369.1    NWSH01002881    PCG67379.1    AGBW02014130    OWR42225.1    + More
KZ149921    PZC77742.1    BABH01037661    BABH01037662    BABH01037663    BABH01037664    GDQN01010892    JAT80162.1    KQ459603    KPI93160.1    KQ458497    KPJ05861.1    AP017481    BBB06729.1    KK852421    KDR24299.1    NEVH01024423    PNF17324.1    PYGN01000224    PSN50728.1    GEZM01103195    JAV51470.1    KQ971362    EFA07871.1    LJIG01022754    KRT78898.1    GEDC01024235    GEDC01023279    JAS13063.1    JAS14019.1    KB632428    ERL95418.1    GL450410    EFN80999.1    KQ434846    KZC08255.1    KZ288386    PBC26463.1    GL888345    EGI62355.1    ADTU01005935    KQ980514    KYN15707.1    KQ414806    KOC60600.1    GECZ01023209    JAS46560.1    GL443604    EFN61815.1    APGK01035703    KB740928    ENN77914.1    KQ761005    OAD58404.1    KQ982691    KYQ52175.1    KQ976738    KYM75787.1    GECU01033206    JAS74500.1    KQ435724    KOX78313.1    NNAY01001571    OXU23562.1    QOIP01000001    RLU26329.1    GBYB01009354    GBYB01009359    JAG79121.1    JAG79126.1    GECL01003038    JAP03086.1    GBGD01000669    JAC88220.1    DS235755    EEB16419.1    LBMM01005099    KMQ91817.1    GFTR01007740    JAW08686.1    GDHC01013431    JAQ05198.1    GDHC01019724    GDHC01000083    JAP98904.1    JAQ18546.1    KK107242    EZA54552.1    MRZV01000198    PIK55859.1    CM004482    OCT64076.1    BC076864    AAMC01072836    AJWK01002591    AMQN01006037    KB297448    ELU10488.1    CM004483    OCT61481.1    GFDF01001224    JAV12860.1    MRZV01002549    PIK33455.1    GFDF01001223    JAV12861.1    KK428118    KFQ88303.1    KL214745    KFV61541.1    GBSH01002148    JAG66878.1    GAEP01000445    JAB54376.1    DS231855    EDS38241.1    IACL01047663    LAB06423.1    AAWZ02030569    AAWZ02030570    LSYS01003774    OPJ82230.1    AEFK01077636    AEFK01077637    AEFK01077638    AEFK01077639    AEFK01077640    AEFK01077641    AKHW03004154    KYO30558.1    AKCR02000124    PKK19997.1    ADON01065060    IACM01008690    LAB18078.1    KL350657    KFZ58685.1    KK683030    KFQ13417.1    KL206788    KFV85708.1    KK655175    KFQ04407.1    KL532858    KFO93397.1    KK757218    KFP43748.1   

Proteomes

UP000218220    UP000007151    UP000005204    UP000053268    UP000027135    UP000235965    + More
UP000245037    UP000007266    UP000030742    UP000008237    UP000005203    UP000076502    UP000242457    UP000007755    UP000005205    UP000078492    UP000053825    UP000000311    UP000019118    UP000075809    UP000078540    UP000053105    UP000215335    UP000279307    UP000002358    UP000009046    UP000036403    UP000053097    UP000192224    UP000230750    UP000186698    UP000085678    UP000008143    UP000002280    UP000092461    UP000014760    UP000053875    UP000002320    UP000001646    UP000190648    UP000189705    UP000007648    UP000050525    UP000053872    UP000016666    UP000053584    UP000261540    UP000095300   

PRIDE

H9J323    Q6DF78   

Pfam

PF04572   Gb3_synth        + More
PF00282   Pyridoxal_deC

Interpro

IPR015421   PyrdxlP-dep_Trfase_major        + More
IPR015424   PyrdxlP-dep_Trfase       
IPR007652   A1-4-GlycosylTfrase_dom       
IPR002129   PyrdxlP-dep_de-COase       

SUPFAM

SSF53383   SSF53383       

Gene 3D

3.40.640.10    

ProteinModelPortal

A0A2H1VBZ8   A0A2A4J667   A0A212EL63   A0A2W1BRM4   H9J323   A0A1E1VZP7   + More
A0A194PPV2   A0A0N1PGF8   A0A2Z5U729   A0A067RWL3   A0A2J7PLV7   A0A2P8Z2L2   A0A1Y1JUJ8   D6WYJ0   A0A0T6AV11   A0A1B6CKL1   U4USC4   E2BTH1   A0A087ZQM4   A0A154P8L0   A0A2A3E3X9   F4WTZ8   A0A158P110   A0A151J1V8   A0A0L7QPP3   A0A1B6F8Q9   E2AXN4   N6TC82   A0A310SS32   A0A151WWY6   A0A195AUQ0   A0A1B6HIF9   A0A0M9A8V4   A0A232EYQ3   A0A3L8E2A5   A0A0C9QZX3   K7IZ82   A0A0V0G4W6   A0A069DWD2   E0VSR3   A0A0J7KNC7   A0A224X8N3   A0A146LA38   A0A146MII3   A0A026WER0   A0A1W5AJ52   A0A1W5AIL0   A0A1W5AHF4   A0A1W5AAM3   A0A2G8L6F9   A0A1L8EXK7   Q6DF78   A0A1S3K002   F7BG81   F6R560   A0A1B0C9Q3   R7UV22   A0A1L8EQ88   A0A1L8E297   A0A2G8JCI3   A0A1L8E2C1   A0A091VF94   A0A093I442   A0A0B8RXL8   U3FX57   B0W7U7   A0A2D4KCK1   H9G850   A0A1V4KCN6   A0A1U7RXI7   G3WAL5   A0A151N1D4   A0A2I0LRE4   U3IC71   A0A2D4LB04   A0A094KJB4   A0A091PZP3   A0A093HSP3   A0A091P907   A0A091HEZ4   A0A3B3QA03   A0A091KW96   A0A1I8P2F7  

PDB

4E1O     E-value=0.00694892,     Score=92

KEGG

101742683    no KO assigned | (RefSeq) pyridoxal-dependent decarboxylase domain-containing protein 1

GO

GO:0003824   GO:0030170   GO:0019752   GO:0016831   GO:0005783   GO:0008117   GO:0030149   GO:0001667   GO:0006665   GO:0005794   GO:0046872   GO:0005634   GO:0008270   GO:0000166   GO:0003906   GO:0006285   GO:0019104  

Length:

353

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0457700000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01491

outside

1  -  353

 

 

Pi

173.400777

Theta

154.808678

Tajima's D

0.159694

CLR

102.302978

CSRT

0.415379231038448

Interpretation

Uncertain