Gene

KWMTBOMO10594

Pre Gene Modal

BGIBMGA003911

Annotation

PREDICTED:_lactosylceramide_4-alpha-galactosyltransferase-like_[Bombyx_mori]

Location

Bomo_Chr17(-):14916242-14929656      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.244 Mitochondrial   Reliability : 1.14

CDS

ATGACTCGACTTGAACGGCTACCCCAAGTGGCTAAAGTCATGCAAGAATACAACATTCACATTCTTGGATTGAGTGAGACGAGATGGAACGGTTTTGGAGAAACGCAATGTGATTTTGGATACTCGTTATTGTACAGTGATTTGTATTTCTTACATTGGGAATCGTTGGAGGACAATTCGTGTCACTATCAAGATTCGAACGATGATCTTCCAGTGATAAGTTCGAGCGTAGAGATGCCTGAAAAGTCGATTTTCTTCCACGAGACCTCGTGCAAGTCCGGACTGGATTCACGGCAGGCTTGCGCCGTGGAAGCAGCGGCCAGAGCTCATCCAAAATGGCAGGTCAACGTTTTAATTTCGGCGCCGATTAAAGGATACCAAAGAGGAGGCAGTTTGTCGGTACTTCGAAAATTTCGTAACGTAAAATTGTGGCGATTGAAGATATGGGAATACGCTAAAGGAACGCCGCTACAGGATATGGTGTTTAACGGTGCTTTGAACAGGACGCGCTGGAGAATATCGCACGCGTCAGATTTACTCCGTTACCTGAGCTTGTATAAGTACGGTGGGGTGTATTTAGACTTGGATACAGTGGTGGCGAAGACTCTGGACCCCCTACCGAAGAACTGGTCAGCGAGGGAGAGCGATGAGATCGTAGCTTCTGGGATCATGTCTTTCTCGAGGGACCATGTCGGTAGAATGGTCGCCAATGCTACCATCAAAGACTTTGAACTGAACTACCGAGGAGACTTGTGGGCTCACAACGGCCCCGGGGTCATCACGAGGGTGCTGAAAGACATTTGTTCAACAACGTCCGTCACCGAAATGGCGGCCGAAAAATGTCAAGGATTCGAAGTCTTCAGTCCAAAACTCTTTCACCCGATCAGCTGGATGGACGCAGAAGATTACTTCAAAGCGACACAACCAAACGTCGATGACCCATACGTCTACCACGTTTGGAACAAGCTCACGCATAATATGGTGGTCGGGAAGAACGCTTTCTATGCTCGACTTGCCGCCAAATACTGCCCATCGATATACAAACTCTACGGGGATTCGTTCGGGTTATAG

Protein

MTRLERLPQVAKVMQEYNIHILGLSETRWNGFGETQCDFGYSLLYSDLYFLHWESLEDNSCHYQDSNDDLPVISSSVEMPEKSIFFHETSCKSGLDSRQACAVEAAARAHPKWQVNVLISAPIKGYQRGGSLSVLRKFRNVKLWRLKIWEYAKGTPLQDMVFNGALNRTRWRISHASDLLRYLSLYKYGGVYLDLDTVVAKTLDPLPKNWSARESDEIVASGIMSFSRDHVGRMVANATIKDFELNYRGDLWAHNGPGVITRVLKDICSTTSVTEMAAEKCQGFEVFSPKLFHPISWMDAEDYFKATQPNVDDPYVYHVWNKLTHNMVVGKNAFYARLAAKYCPSIYKLYGDSFGL

Uniprot

A0A2W1BYH0   A0A2A4J5W2   A0A194PKA4   A0A194RNS6   A0A2H1VC16   A0A212EL59   + More
A0A2A4J4W5   A0A1B6KGG8   A0A1B6F5I9   A0A1L8E222   A0A194PJE5   A0A1L8E188   A0A0L7L2D0   A0A1B6IY44   A0A2W1BRN3   A0A2S2P3F0   K7J822   A0A139WD10   A0A0M9A6M5   A0A232FL26   Q17BC1   J9LHB6   A0A182JCC2   B4G6Z6   A0A3L8DBZ6   A0A2H8TU84   A0A2P8Y955   A0A023F9Y6   Q29LZ6   A0A2J7RGF0   A0A1W4UUM8   A0A067QTV6   B0XJQ1   A0A0T6AVD4   A0A1Y1MP30   B3MMY4   A0A182H3Q5   A0A154P0T5   A0A0L7L285   A0A182G6A3   A0A0L7QSU3   A0A0Q9XCC8   B4KIS8   E0W2F6   A0A0C9PP58   J9LZA7   B4NXC4   A0A3B0JB41   A0A2S2R8U0   B4NRU3   B3NAP4   B4I2U3   A0A0M3QTB1   Q9VQK4   A0A310SHS0   B4JR55   A0A2J7QWN4   A0A088A691   A0A182QPW0   W8C7Y3   A0A084W4T9   A0A067QJC5   A0A182MJS3   E2B6F6   A0A034VQM8   F4WJ37   A0A1B6DZ23   A0A0K8TX71   A0A0Q9WMN5   B4LVN6   A0A158NTU0   A0A182V6P6   A0NF31   A0A2M4ARP0   A0A2M4AR53   A0A1S4GXR4   A0A2C9GS88   Q7Q470   Q6KCK5   A0A1Y9IVT4   A0A182L0Z2   A0A182Y3H8   A0A2C9GSB1   B5DIP6   A0A182F132   A0A034VNR2   A0A2W1BX16   A0A1S4GYF2   B3P6E5   A0A3B0K7Q7   A0A0K8UGZ6   A0A1I8PPY6   A0A1B0EZZ0   A0A0K8TTK9   A0A2M4BRX8   A0A2M4BS52   A0A1B0GDL3   A0A1I8N4Z5   A0A336KZ45  

Pubmed

28756777    26354079    22118469    26227816    20075255    18362917    + More
19820115    28648823    17510324    17994087    30249741    29403074    25474469    15632085    24845553    28004739    26483478    18057021    20566863    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485    24438588    20798317    25348373    21719571    21347285    12364791    15130086    20966253    25244985    26369729    25315136   

EMBL

KZ149921    PZC77736.1    NWSH01002999    PCG67126.1    KQ459603    KPI93159.1    + More
KQ460124    KPJ17671.1    ODYU01001747    SOQ38367.1    AGBW02014130    OWR42226.1    PCG67125.1    GEBQ01029420    JAT10557.1    GECZ01024301    JAS45468.1    GFDF01001405    JAV12679.1    KPI93158.1    GFDF01001581    JAV12503.1    JTDY01003510    KOB69439.1    GECU01015852    JAS91854.1    PZC77739.1    GGMR01011378    MBY23997.1    KQ971361    KYB25806.1    KQ435724    KOX78307.1    NNAY01000057    OXU31441.1    CH477324    EAT43525.1    ABLF02031340    CH479180    EDW29195.1    QOIP01000010    RLU18040.1    GFXV01005704    MBW17509.1    PYGN01000790    PSN40797.1    GBBI01000420    JAC18292.1    CH379060    EAL33898.3    NEVH01003784    PNF39914.1    KK853278    KDR09057.1    DS233574    EDS30590.1    LJIG01022746    KRT78932.1    GEZM01028141    JAV86440.1    CH902620    EDV31009.1    JXUM01107787    JXUM01107788    JXUM01107789    KQ565173    KXJ71251.1    KQ434783    KZC04750.1    KOB69441.1    JXUM01147537    KQ570388    KXJ68372.1    KQ414758    KOC61541.1    CH933807    KRG03241.1    KRG03242.1    EDW12434.2    DS235878    EEB19812.1    GBYB01002968    JAG72735.1    ABLF02032521    CM000157    EDW87481.1    KRJ97176.1    OUUW01000004    SPP79564.1    GGMS01017185    MBY86388.1    CH981541    CM002910    EDX15321.1    KMY87803.1    CH954177    EDV57567.1    CH480820    EDW54088.1    CP012523    ALC38603.1    AE014134    AY051524    AAF51162.1    AAK92948.1    KQ761005    OAD58410.1    CH916372    EDV99385.1    NEVH01009422    PNF32998.1    AXCN02000788    GAMC01007771    GAMC01007770    GAMC01007769    GAMC01007768    JAB98784.1    ATLV01020383    KE525299    KFB45233.1    KDR09058.1    AXCM01015903    GL445973    EFN88700.1    GAKP01014842    GAKP01014841    JAC44110.1    GL888181    EGI65807.1    GEDC01006382    GEDC01000423    JAS30916.1    JAS36875.1    GDHF01033235    JAI19079.1    CH940649    KRF81616.1    EDW64430.1    ADTU01026153    ADTU01026154    AAAB01008964    EAU76327.2    GGFK01009947    MBW43268.1    GGFK01009946    MBW43267.1    APCN01000801    EAA12323.3    AJ621420    CAF18556.1    EDY70188.2    GAKP01014843    JAC44109.1    PZC77737.1    CH954182    EDV53615.1    SPP79558.1    GDHF01026478    JAI25836.1    AJWK01030738    AJWK01030739    AJWK01030740    GDAI01000115    JAI17488.1    GGFJ01006694    MBW55835.1    GGFJ01006693    MBW55834.1    CCAG010011939    UFQS01000689    UFQT01000689    SSX06230.1    SSX26584.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000007151    UP000037510    UP000002358    + More
UP000007266    UP000053105    UP000215335    UP000008820    UP000007819    UP000075880    UP000008744    UP000279307    UP000245037    UP000001819    UP000235965    UP000192221    UP000027135    UP000002320    UP000007801    UP000069940    UP000249989    UP000076502    UP000053825    UP000009192    UP000009046    UP000002282    UP000268350    UP000000304    UP000008711    UP000001292    UP000092553    UP000000803    UP000001070    UP000005203    UP000075886    UP000030765    UP000075883    UP000008237    UP000007755    UP000008792    UP000005205    UP000075903    UP000007062    UP000075840    UP000075920    UP000075882    UP000076408    UP000069272    UP000095300    UP000092461    UP000092444    UP000095301   

PRIDE

Q6KCK5   

Pfam

PF04572   Gb3_synth        + More
PF04488   Gly_transf_sug

Interpro

IPR007577   GlycoTrfase_DXD_sugar-bd_CS        + More
IPR029044   Nucleotide-diphossugar_trans       
IPR007652   A1-4-GlycosylTfrase_dom       
IPR015421   PyrdxlP-dep_Trfase_major       
IPR015424   PyrdxlP-dep_Trfase       

SUPFAM

SSF53448   SSF53448        + More
SSF53383   SSF53383       

Gene 3D

3.40.640.10    

ProteinModelPortal

A0A2W1BYH0   A0A2A4J5W2   A0A194PKA4   A0A194RNS6   A0A2H1VC16   A0A212EL59   + More
A0A2A4J4W5   A0A1B6KGG8   A0A1B6F5I9   A0A1L8E222   A0A194PJE5   A0A1L8E188   A0A0L7L2D0   A0A1B6IY44   A0A2W1BRN3   A0A2S2P3F0   K7J822   A0A139WD10   A0A0M9A6M5   A0A232FL26   Q17BC1   J9LHB6   A0A182JCC2   B4G6Z6   A0A3L8DBZ6   A0A2H8TU84   A0A2P8Y955   A0A023F9Y6   Q29LZ6   A0A2J7RGF0   A0A1W4UUM8   A0A067QTV6   B0XJQ1   A0A0T6AVD4   A0A1Y1MP30   B3MMY4   A0A182H3Q5   A0A154P0T5   A0A0L7L285   A0A182G6A3   A0A0L7QSU3   A0A0Q9XCC8   B4KIS8   E0W2F6   A0A0C9PP58   J9LZA7   B4NXC4   A0A3B0JB41   A0A2S2R8U0   B4NRU3   B3NAP4   B4I2U3   A0A0M3QTB1   Q9VQK4   A0A310SHS0   B4JR55   A0A2J7QWN4   A0A088A691   A0A182QPW0   W8C7Y3   A0A084W4T9   A0A067QJC5   A0A182MJS3   E2B6F6   A0A034VQM8   F4WJ37   A0A1B6DZ23   A0A0K8TX71   A0A0Q9WMN5   B4LVN6   A0A158NTU0   A0A182V6P6   A0NF31   A0A2M4ARP0   A0A2M4AR53   A0A1S4GXR4   A0A2C9GS88   Q7Q470   Q6KCK5   A0A1Y9IVT4   A0A182L0Z2   A0A182Y3H8   A0A2C9GSB1   B5DIP6   A0A182F132   A0A034VNR2   A0A2W1BX16   A0A1S4GYF2   B3P6E5   A0A3B0K7Q7   A0A0K8UGZ6   A0A1I8PPY6   A0A1B0EZZ0   A0A0K8TTK9   A0A2M4BRX8   A0A2M4BS52   A0A1B0GDL3   A0A1I8N4Z5   A0A336KZ45  

KEGG

105841695    K01988 lactosylceramide 4-alpha-galactosyltransferase [EC:2.4.1.228] | (RefSeq) lactosylceramide 4-a

PATHWAY

00601    Glycosphingolipid biosynthesis - lacto and neolacto series - Bombyx mori (domestic silkworm)
00603    Glycosphingolipid biosynthesis - globo and isoglobo series - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0016757   GO:0003824   GO:0043066   GO:0006688   GO:0035248   GO:0050512   GO:0008376   GO:0009247  

Length:

356

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00405

Exp number, first 60 AAs:

0.00038

Total prob of N-in:

0.01187

outside

1  -  356

 

 

Pi

189.582197

Theta

22.264689

Tajima's D

0.395798

CLR

0.252065

CSRT

0.489325533723314

Interpretation

Uncertain