SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10587
Pre Gene Modal
BGIBMGA003921
Annotation
Uncharacterized_protein_OBRU01_22018_[Operophtera_brumata]
Location in the cell
Cytoplasmic   Reliability : 1.229 Mitochondrial   Reliability : 1.491
 

Sequence

CDS
ATGAATCAACAACAAGAAAAAAAAATTTACTCTCAAGAAGAGATTAAAAAGATAGCTCCAGGCTATAGAGGGAAACCAGACAAATTCGATCCTGCTAAGGGAGCTAAACGTCAACCAGGAAATCACGCCAACTTCGCAAGATTACCTGAAATTGTCGAAGAGGTCTACTCTTCCATTGGAGACGACCAAAATCTCAACAAACAAATGACCAAAGGCATGCTAATGTACTATACAACAGCTATGTTATGGGCACGTTTGTTGGATATTAAGGCCAAGCGTGGAAACACAAACTTGACCTTCCAAGAACTGGAGTTCTACAAAGCTGTCATGCAACACGAGTATAACATACCGCAGCCAGTATATCTGTTCCTAAACGGAATTGGTGAAGTTAATGATGCTACAGGTAAAACTGTGTACCTTGCAAATCATCAACTTCCAGTGACAGTTGTACAAGGTAGTGGTGGTTATCACTCAAATGCTGTAGATGACGCATCGCACAACCTCTACGAAGAGATACCCTCAATAGGTATTTGTGGAGATGTGCTAATGGCAGAATCATCAGAAGCGGCACACCCAGTGCCAAACTTCAGGGTGCTACCCCAGAATACCAAAGCAACTCGCGCAATGTGTGGGTACTTTGGACCAATAGGAGCTCGGAAAGAGGAGGTGCGTGTTTTACTGAATTCGTTCTGTATAACCGCGAACCATTTCGACGAGACCATTGGAGGAACACGTCTTAACGTTCACCTGTTACAAAGGGTCAGTGACTATTTCATGGGATGTCCTACATTCCGAAACGAAAAAGTCAAAGTTGACGCATTAACGATTGAGGGAGACGGAGTCCAACTCATCAAGTCAGTACCGACTGATGAGAACATCGAGCAGAACGCACGCTGGACGAGTCTAATTATTAGACCAAAGTCAGCAAATGCAAATTCTGTCTTAACGTTTGGTGCCTCATATCTTATGGAATACCAACTATATAAGCAAGCTATTGCAGGAAGCAATGCCAATTGGTGTTGTATCGAGCAAGTAGCTGCTGCAATACATTGGGAGATACCAGAACCATGGATAGCGAACAAAAACGCAAGAAGAGTTCTGCCACCGGGAATGGTTACTGAGAGGTTTGCCTCCATATCTGACTCCCAAAGGAACAGAACAAATGCAATTGTTCGAAGGATGATTATCAGTCCACGATGA
Protein
MNQQQEKKIYSQEEIKKIAPGYRGKPDKFDPAKGAKRQPGNHANFARLPEIVEEVYSSIGDDQNLNKQMTKGMLMYYTTAMLWARLLDIKAKRGNTNLTFQELEFYKAVMQHEYNIPQPVYLFLNGIGEVNDATGKTVYLANHQLPVTVVQGSGGYHSNAVDDASHNLYEEIPSIGICGDVLMAESSEAAHPVPNFRVLPQNTKATRAMCGYFGPIGARKEEVRVLLNSFCITANHFDETIGGTRLNVHLLQRVSDYFMGCPTFRNEKVKVDALTIEGDGVQLIKSVPTDENIEQNARWTSLIIRPKSANANSVLTFGASYLMEYQLYKQAIAGSNANWCCIEQVAAAIHWEIPEPWIANKNARRVLPPGMVTERFASISDSQRNRTNAIVRRMIISPR

Summary

Pfam
PF17921   Integrase_H2C2
Interpro
IPR001584   Integrase_cat-core        + More
IPR012337   RNaseH-like_sf       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
SUPFAM
SSF53098   SSF53098       
Gene 3D

Ontologies

Topology

Length:
399
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.21931
Exp number, first 60 AAs:
0
Total prob of N-in:
0.14690
outside
1  -  399
 
 

Population Genetic Test Statistics

Pi
144.617216
Theta
150.810332
Tajima's D
0.01682
CLR
1.578869
CSRT
0.378431078446078
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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