Gene

KWMTBOMO10561

Pre Gene Modal

BGIBMGA014024

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_15-hydroxyprostaglandin_dehydrogenase_[NAD(+)]-like_[Bombyx_mori]

Location

Bomo_Chr17(-):14126416-14127447      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.954

CDS

ATGGCTGTAGAGTTAACGTTTCTATTTTGCCTAGTAATACTTTCGGTTAGGGCCAATTCAATCAGTGACAAGGATCTAAAAGGTAAAAATGTCATCGTGACCGGGGCAGCTAGAGGTATAGGATACGCTATAGCTGATAATTTCCTAGCTAATGGAGTCAATCAAATTATAATCTTAGATAAAAATGTGACTAACGGAATAAGAGCAGCTGAAACTCTGAAATGTAAATATGGAAGAGATAAGGTTATTTTTATACCATGCGATGTTACCAAAGATCTTCATCTGTGGGATGATATAGTTGACGAGCATGGGCCGATACATGTGTTAGTCAACAATGCTGGAATACTTGAAGAAGACCAACCAAGAGAAATGATATTGACCAATAGCGTTGCACCGATTGAATGGTCATTAAAATTCAGAGAATACGCGAGAAACGATAAAGGTGGTCCTGGTGGAACTATTGTTAACATCGCGTCCGATTCAGGTTACAGTATAACCCCGTTTATGGTTTCCTACATCTCATCAAAGCATGCGAGTCTCGCTTTCTCCAAGTCATTAGGACACCCATACAACTTCAAAAGGACAGGAATCAGGATTGTGGCTCTATGTCCAGAATTGACCTACACTGCGATGACTACAAAGCAAATGGTTTGGGATGATCAGTTGGAAGATTTTAAAAAGGTAACCAAGGATGACGTTTCGCAGAAACCCGATGCTGTCGGCAAAGCAGCTGTGCACATATTCAAGAATGCCGAATCCGGGACCGCTTGGAAAATCGCTGGTGGTCAACTGAGTGTAGCTCCAGAGTATTTATACAAGACTGATGAAGAAATTGAAAACTCGTTAAATTAA

Protein

MAVELTFLFCLVILSVRANSISDKDLKGKNVIVTGAARGIGYAIADNFLANGVNQIIILDKNVTNGIRAAETLKCKYGRDKVIFIPCDVTKDLHLWDDIVDEHGPIHVLVNNAGILEEDQPREMILTNSVAPIEWSLKFREYARNDKGGPGGTIVNIASDSGYSITPFMVSYISSKHASLAFSKSLGHPYNFKRTGIRIVALCPELTYTAMTTKQMVWDDQLEDFKKVTKDDVSQKPDAVGKAAVHIFKNAESGTAWKIAGGQLSVAPEYLYKTDEEIENSLN

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

H9JWW0   H9JYK0   H9JWW1   H9JWW7   H9JWW6   H9J8J0   + More
Q1HPX6   H9J8I9   H9J8I4   H9J369   A0A194R949   A0A194R584   A0A0L7KQW0   A0A194R4F0   H9J8I5   A0A0H4TDA9   A0A2W1BR60   A0A0F6Q2J9   A0A0L7LJP6   A0A2H1VNC8   A0A0F6Q0W0   A0A194QJQ6   A0A1L8D6N5   A0A2W1BL60   H9J355   A0A212F936   I4DKW3   A0A2A4JIR0   A0A2W1BSK9   A0A194R3L5   A0A0F6Q0X5   S4PIB4   U5KC20   D2SNK3   A0A212F911   A0A0H4TD16   H9J8I6   A0A0H4TH26   A0A0F6Q4H7   A0A2H1VSR5   H9J354   A0A2H1VR53   A0A0L7K2F9   A0A2A4JJW8   H9J353   H9J0A6   A0A151WLU8   A0A2H8TFE7   A0A2S2NV02   A0A067QWG1   K7IV86   A0A0C9R6P4   A0A232EGH1   A0A212F0G1   J9JKN0   A0A154PC81   A0A0L7QSX6   F4W474   B0XI43   A0A2P8Z2R9   A0A0J7NFD4   A0A310SGK5   A0A194QRC6   A0A195ET92   A0A195B3G6   A0A0J7L0X1   E0VAP2   A0A158NZK6   A0A0J7L5T5   A0A195ETI6   A0A026WTY5   F4W473   E2B6N3   A0A151X1L8   A0A3G1T1B2   A0A158NP49   E2BHN0   E9IVH7   A0A195CLI9   A0A195CI97   G8JKE8   A0A2J7QGZ8   A0A1W4WBZ1   A0A195E4S8   A0A151XEI7   Q6RUR3   A0A195B6A6   F4WL42   W5JA84   E9I9W7   A0A2A3EAR6   A0A026WRA5   A0A195FBJ6   A0A195EKM2   A0A2S2R4Y7  

Pubmed

19121390    26354079    26227816    28756777    22118469    22651552    + More
23622113    24053512    20074338    24845553    20075255    28648823    21719571    29403074    20566863    21347285    24508170    20798317    21282665    22679863    20920257    23761445    30249741   

EMBL

BABH01043465    BABH01044234    BABH01043464    BABH01040078    BABH01027538    DQ443276    + More
ABF51365.1    BABH01027525    BABH01036649    KQ460779    KPJ12396.1    KPJ12400.1    JTDY01007189    KOB65394.1    KPJ12399.1    BABH01027529    BABH01027530    KP899549    AKQ06148.1    KZ149989    PZC75627.1    KP237873    AKD01726.1    JTDY01000876    KOB75589.1    ODYU01003471    SOQ42306.1    KP237884    AKD01737.1    KQ459144    KPJ03686.1    GEYN01000013    JAV02116.1    PZC75628.1    BABH01036642    AGBW02009651    OWR50237.1    AK401931    BAM18553.1    KPJ03685.1    NWSH01001322    PCG71699.1    PZC75626.1    KPJ12398.1    KP237899    AKD01752.1    GAIX01005455    JAA87105.1    KC007343    AGQ45608.1    EZ407131    ACX53694.1    OWR50236.1    KP899551    AKQ06150.1    BABH01027533    KP899550    AKQ06149.1    KP237875    AKD01728.1    ODYU01003911    SOQ43254.1    SOQ43256.1    JTDY01017041    KOB51868.1    PCG71700.1    BABH01036648    BABH01019209    KQ982944    KYQ48859.1    GFXV01001021    MBW12826.1    GGMR01008279    MBY20898.1    KK852879    KDR14474.1    AAZX01008191    GBYB01012004    JAG81771.1    NNAY01004765    OXU17447.1    AGBW02011082    OWR47236.1    ABLF02032246    ABLF02032258    KQ434870    KZC09506.1    KQ414755    KOC61725.1    GL887491    EGI71070.1    DS233256    EDS28983.1    PYGN01000223    PSN50783.1    LBMM01005734    KMQ91250.1    KQ771134    OAD52542.1    KQ461175    KPJ07894.1    KQ981979    KYN31470.1    KQ976625    KYM79031.1    LBMM01001364    KMQ96442.1    DS235012    EEB10448.1    ADTU01004714    LBMM01000659    KMQ97859.1    KYN31471.1    KK107119    EZA58569.1    EGI71069.1    GL446000    EFN88617.1    KQ982585    KYQ54299.1    MG846919    AXY94771.1    ADTU01001531    GL448322    EFN84778.1    GL766234    EFZ15444.1    KQ977642    KYN00939.1    KQ977720    KYN00433.1    JP593077    AER92462.1    NEVH01014359    PNF27833.1    KQ979609    KYN20168.1    KQ982254    KYQ58773.1    AY491503    AAR84629.1    KQ976587    KYM79714.1    GL888207    EGI65005.1    ADMH02001698    ETN61367.1    GL761846    EFZ22724.1    KZ288303    PBC28808.1    QOIP01000009    EZA58570.1    RLU18591.1    KQ981685    KYN37995.1    KQ978747    KYN28686.1    GGMS01015878    MBY85081.1   

Proteomes

UP000005204    UP000053240    UP000037510    UP000053268    UP000007151    UP000218220    + More
UP000075809    UP000027135    UP000002358    UP000215335    UP000007819    UP000076502    UP000053825    UP000007755    UP000002320    UP000245037    UP000036403    UP000078541    UP000078540    UP000009046    UP000005205    UP000053097    UP000008237    UP000078542    UP000235965    UP000192223    UP000078492    UP000000673    UP000242457    UP000279307   

PRIDE

H9JWW0    H9JYK0    H9JWW1    H9JWW7    H9JWW6    H9J8J0    + More
Q1HPX6    H9J8I9    H9J8I4    H9J369    H9J8I5    H9J355    H9J8I6    H9J354    H9J353    H9J0A6   

Pfam

PF00106   adh_short

Interpro

IPR002347   SDR_fam        + More
IPR036291   NAD(P)-bd_dom_sf       
IPR020904   Sc_DH/Rdtase_CS       
IPR006883   AcMNPV_PIF-4       

SUPFAM

SSF51735   SSF51735       

ProteinModelPortal

H9JWW0   H9JYK0   H9JWW1   H9JWW7   H9JWW6   H9J8J0   + More
Q1HPX6   H9J8I9   H9J8I4   H9J369   A0A194R949   A0A194R584   A0A0L7KQW0   A0A194R4F0   H9J8I5   A0A0H4TDA9   A0A2W1BR60   A0A0F6Q2J9   A0A0L7LJP6   A0A2H1VNC8   A0A0F6Q0W0   A0A194QJQ6   A0A1L8D6N5   A0A2W1BL60   H9J355   A0A212F936   I4DKW3   A0A2A4JIR0   A0A2W1BSK9   A0A194R3L5   A0A0F6Q0X5   S4PIB4   U5KC20   D2SNK3   A0A212F911   A0A0H4TD16   H9J8I6   A0A0H4TH26   A0A0F6Q4H7   A0A2H1VSR5   H9J354   A0A2H1VR53   A0A0L7K2F9   A0A2A4JJW8   H9J353   H9J0A6   A0A151WLU8   A0A2H8TFE7   A0A2S2NV02   A0A067QWG1   K7IV86   A0A0C9R6P4   A0A232EGH1   A0A212F0G1   J9JKN0   A0A154PC81   A0A0L7QSX6   F4W474   B0XI43   A0A2P8Z2R9   A0A0J7NFD4   A0A310SGK5   A0A194QRC6   A0A195ET92   A0A195B3G6   A0A0J7L0X1   E0VAP2   A0A158NZK6   A0A0J7L5T5   A0A195ETI6   A0A026WTY5   F4W473   E2B6N3   A0A151X1L8   A0A3G1T1B2   A0A158NP49   E2BHN0   E9IVH7   A0A195CLI9   A0A195CI97   G8JKE8   A0A2J7QGZ8   A0A1W4WBZ1   A0A195E4S8   A0A151XEI7   Q6RUR3   A0A195B6A6   F4WL42   W5JA84   E9I9W7   A0A2A3EAR6   A0A026WRA5   A0A195FBJ6   A0A195EKM2   A0A2S2R4Y7  

PDB

2GDZ     E-value=1.95262e-22,     Score=260

KEGG

101745595    K00069 15-hydroxyprostaglandin dehydrogenase (NAD) [EC:1.1.1.141] | (RefSeq) 15-hydroxyprostaglandin

GO

GO:0016491   GO:0004022   GO:0016404  

SignalP

Position:   1 - 18,         Likelihood:  0.982366

 

 

Length:

283

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.26659

Exp number, first 60 AAs:

0.2491

Total prob of N-in:

0.01184

outside

1  -  283

 

 

Pi

65.205948

Theta

119.367719

Tajima's D

-1.360137

CLR

299.285602

CSRT

0.0785960701964902

Interpretation

Uncertain