Silkworm Genome Informatics Database

Gene

KWMTBOMO10556

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr17(+):13919668-13925525 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.152 Nuclear Reliability : 1.257

CDS

ATGAATGATGGCAAACTTACAAAAAACATTACCCCAGGAGGGGAGACCCGCTCGGGGGAAGGGTGCACCGTCACCGGCGCCGTCATCGGCGTCGATGTCTGTCGCCTCGCTGGACGGGCGGACGACAGAAGAGGAGGAGGGCGGTCTTCGGGACCCTGCCTTGGTCATAGGCAGGGCCATGAAGACCGTCAAGTCGTATGCGGCGACCAGTGCCAAAACCAAAGCTGCTGGCCGCAGGCTGCGGGAAGTCGTCTCGCGAGTCTCGAAGGTTCGGTTGCTTCCGCCAATGACCAGGTGGTGCAGCTGATGGCGGAGAATTCGAGGCTCCGAGCACAGCTACAGGCGCAGCAGCGGCCCGATGGCAAGGTTGCTGCTACCAAGCGGGTAGCCGCGACGAGGTCGTCGCCCGCGTTGCCGCGTGCCGCTGGGTCGCGGACTCCTCCGGCATCTGTGCCGGCGGTGTCGCCGCTGGTCTCCGGGGTCCCTCGGGGTCCCTGTCCCTCAGCGGCGGCTGGCGACCCGTGGCCCGTGCTGCCACCATCGCGCGCGGTACAGTGGCGTTCGCGTCTCCCGTCGCCGCGGTCTAGGGAGGCGACGGCCGTCGAGCGGCAGCAGGGATCCGCGGGGCCACGGATCTTGGACCTGCCGGAACCGAATTGCTACAGCCTGGACGAGATTATCGACCGCACCGTCCAGGCTGTAATGGAAAGGCTGGGTGGCGGGCTGGCGGCTCTCGAGGCGAAGCGTGTTGTCTCTGGTGACGCTGAGCGGCCTGCGTCTACACCTGCCGCGGTGTTGGGTGCTGCGGTGACCCACTCCACCCCCGTACAGGCTCCAGCCACTAGGGCGGGCCCGGGGCGAGACAGAGCCAAGCGGGGGGGCGGCGCTAATGCGAAGTGCACATCGCAGGCGCCTCAACCCCGTCCGCTGCCTCCGCCCCCGTCTAACATGGACGAGGGGTGGAATGTGGTGGCCCGGCGGGGTGCCAAGAGGGCCGTACCGACAGCTCCGCAAGTGGACGGAGCACCGGCCACCGCGGTGTCTCAGGCTGCTCCCCAACAGGGTCGAGCGCCTGTGGCCGCCAAGAAAAAGAAGACGAAGAAGAAGTCGTCGCGCGCGCCGCGGTCGGCGGCAGTGGTCTTAACGCTGCTGCCGGCCGCCGAGGCCAAGGGCATGTCATACGGAGATGTAGTCTCCCGGGCGCGCGCGGCTATTGATCTGGACGAGATCGGGGCGGGGGAGGGCCTCCGCTGTAGGCTGACGGCCAATGGGGCCAAGCTACTAGAGTGTCCCGGTGCCGATAGTTCCGGCATCGCGGAGCGTCTGGCGGCGAAGCTCCGTACGGTTCTGCCTGAGGAGGAGGTTCGAGTGCCTGGCTCTGTTTGGGTGCGTTGCCCGGTAGAGGCGGCCACCTCCTTGGCTGCTCCTCCGCCCGGGAGACCGTCGGGGGAACCGGGCAGGTTGCGCGTGGGCTGGATAGCGGCCCGCGTGCACCTTCTCGAACCACGCGCCTGGCGGTGCCTCAGATGCTTCAGCACTGGGCACTGCCTCGTTAAATGCCGGATGACTGTTGGTTTGGGGACGTTGATGGCTTGGCGGCCATACATATCAGAAGAACCGCGATGGTCCTCCCCCCTGGCGATGGTGACCAGGGGCCCCGGGATCGTCGCGGTACAATTAGAGAATATCGTCGTGATCGGGGTGTACTTTTCTCCGAATCGGCCTACCGTCGAGTTCGAGCGGTTCCTGGACGGGCTAGAGGTGATCGCTCGTCAACTCGCTCCCCGTTCAGTGATACTGGCGGGGGACTTCAATGCGAAGTCTGTCGCTTGGGGTTCCCCATTCACGGACGCTCGTGGTAGGCTGCTGGAGGAGTGGGCGGTCGCGGTCGGTCTCTGTATCGTTAATAGGGGCTCGATCGCGACTTGCGTGCGGTGGACGGGCGAGTCTATCGTGGACTTGACGTTCGCGAGCTCGCCCGTCGCACGGCGCATCCTCGGCTGGAGAGTGGTGGTGGGGGCGGAATCGTTGTCCGATCACCGGTATATCCGGTACGATCTTTCTGCCCCCGCGCCGACGCCGGCTGCAGGTGCCCGCGAGGTTGACCCCCCGCAGAGTGCATCCCGGTCATTCCCTAGGTGGGCACTGAAGCTCCTGAACAGGGAGCTCCTGGTGGAGGCCTCTATGGTGGCGGCGTGGGCGCCCAAGCGCCCACAACCTGTCGATGTGGAAACCGAGGCCGAATGGTTCCGGGGCGCGATGCACCGCATATGTGATGCCTCGATGCCCCGGGTCGGCCCTCGGCATTCTGGACGGCGACAGTCGCCCTGGTGGTCGCCCGAAATTGCAAGACTGCGTGCGGTCTCCATTCGGGCGAGCCGCCGGTGCACTAGACACCGCCGTCGCCGCCGCCTGCGGCGCGACGAGCCTGTCGCGTTCGCGGAGGAGGAAGCTCGGCTGCACCGCGAATATCGCGCTGCGAAGGACGCCCTGCGGCTGGCCATCAGGCGGGCCAAGGAACAAAGCATGGAGAGACTCTTGGAGGCGCTCGAAGCGGATCCGTGGGGGAGCCCATACAAATTGGTACGCGGCAAGTTACGCCCGTGGGCCCCCTCTATGACTGAGCGCCTCCAGCCTCAGCAGCTGCAGGACATCGTTTCGGCGTTGTTCCCGCAGGAGCGGGAGGGTTTTGTCCCTCCCGCTATGGGCGGGCCGTCTGACACCGTCGACGGCCAAGCTCCTGCTGAGGTGCCCCGTATTACTGAGGCAGGGCTCCGGGTGGCCGTTGTCAAGATGACTGCGAGAGACACGGCCCCCGGCCCGGACGGAGTCCACGGCCGGGTATTGGCCTTGGCCCTCGGTGCCCTGGGGGACCGGCTCCTTGAGCTATATAATGGCTGCTTGGAGTCGGGACGGTTTCCGTCGCTCTGGCGGACGGGTAGACTTGTGTTGTTGAGGAAGGAGGGGCGCCCGGTGGATACAGCCGCTGGGTATCGTCCTATCGTACTGCTGGACGAGGCGGGAAAATTGCTGGAACGAATTCTGGCTGCCCGCATCGTTCAGCACCTGGTCGGGGTGGGGCCTGACCTGTCGGCGGAGCAGTACGGCTTCCGGGAGGGCCGTTCGACCGTGGATGCAATTCTTCGCGTGCAGTCCCTCTCGGACGAGGCCGTTTCTCGGGGTGGGGGGTCGGTTCTCGGCCCCCTCTTGTGGAATATCGGGTACGACTGGGTGCTGAGGGGCGCCCTCCTCCCGGGCCTCCGCGTTATTTGTTACGCGGACGACACGTTGGTCGTGGCCCGGGGGGATGATTATAGGGAGTCTGCCCGTCTCGCCACAGCGGGAGTGGCCCTCGTCGTCGGAAGGATAAGGAGGCTGGGTCTCGACGTGGTGCTCAATAAATCCGAGGCTCTGTGGTTTCACGGGCCGCGGGGGGCGCCACCCGTTGACACCCACATCGTGGTTGGAGGCGTCCGGATAGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCGTGTTGGACAGCCGGTGGGCTTTTCGTGCTCACTTTGCGGAGCTGGTCCCCCGATTGATGGGGACGGCCGGTTCTTTGAGCCGGCTGCTCCCGAATATTGGGGGACCGGATCAGGTTGTGCGCCGCCTCTACGCGGGGGTGGGTCATCCGCGGATATCGCACCGTCTCTTCGAGGCGGCGTGTGTTTTGGCGGGGACGCCGCCATGGGAGCTGGAGGCGGAGTCGCTCGCTGCCGACTATCGGTGGCGCAGCGAGCTTCGTGCTCGGGGCGTGGCGCGTGTCCCCGAAAGTGAGCTGCGGGCGCGGAAGGCCCATTCTCGGCGGTCCGTGCTCGAGTCGTGGTCGAGGCGATTGGCCAACCCCACGTGGGGGCTACGGACCGTCGAGGCGGTTTACCCGGTCTTTGATGACTGGGTGAATCGTGGCGAAGGACGTCTCACCTTTCGTCTGGTGCAGGTGCTGACCGGGCACGGATGCTTCGGGAAGTACCTGCGCCGGATAGGGGCTGAGCCGACGACGAGGTGTCACCATTGTGGACACGACCTGGACACGGTGGAGCATACGCTCGCTGTCTGCCCCGCTTGGGAGGTGCAGCGCCGTGTCCTGGTCGCAAAGATAGGACCTGACTTGTCGCTGCCTGGCGTCGTGGCGTCGATGCTTGGCAGCGATGAGTCATGGAAGGCATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGAGTGA

Protein

MNDGKLTKNITPGGETRSGEGCTVTGAVIGVDVCRLAGRADDRRGGGRSSGPCLGHRQGHEDRQVVCGDQCQNQSCWPQAAGSRLASLEGSVASANDQVVQLMAENSRLRAQLQAQQRPDGKVAATKRVAATRSSPALPRAAGSRTPPASVPAVSPLVSGVPRGPCPSAAAGDPWPVLPPSRAVQWRSRLPSPRSREATAVERQQGSAGPRILDLPEPNCYSLDEIIDRTVQAVMERLGGGLAALEAKRVVSGDAERPASTPAAVLGAAVTHSTPVQAPATRAGPGRDRAKRGGGANAKCTSQAPQPRPLPPPPSNMDEGWNVVARRGAKRAVPTAPQVDGAPATAVSQAAPQQGRAPVAAKKKKTKKKSSRAPRSAAVVLTLLPAAEAKGMSYGDVVSRARAAIDLDEIGAGEGLRCRLTANGAKLLECPGADSSGIAERLAAKLRTVLPEEEVRVPGSVWVRCPVEAATSLAAPPPGRPSGEPGRLRVGWIAARVHLLEPRAWRCLRCFSTGHCLVKCRMTVGLGTLMAWRPYISEEPRWSSPLAMVTRGPGIVAVQLENIVVIGVYFSPNRPTVEFERFLDGLEVIARQLAPRSVILAGDFNAKSVAWGSPFTDARGRLLEEWAVAVGLCIVNRGSIATCVRWTGESIVDLTFASSPVARRILGWRVVVGAESLSDHRYIRYDLSAPAPTPAAGAREVDPPQSASRSFPRWALKLLNRELLVEASMVAAWAPKRPQPVDVETEAEWFRGAMHRICDASMPRVGPRHSGRRQSPWWSPEIARLRAVSIRASRRCTRHRRRRRLRRDEPVAFAEEEARLHREYRAAKDALRLAIRRAKEQSMERLLEALEADPWGSPYKLVRGKLRPWAPSMTERLQPQQLQDIVSALFPQEREGFVPPAMGGPSDTVDGQAPAEVPRITEAGLRVAVVKMTARDTAPGPDGVHGRVLALALGALGDRLLELYNGCLESGRFPSLWRTGRLVLLRKEGRPVDTAAGYRPIVLLDEAGKLLERILAARIVQHLVGVGPDLSAEQYGFREGRSTVDAILRVQSLSDEAVSRGGGSVLGPLLWNIGYDWVLRGALLPGLRVICYADDTLVVARGDDYRESARLATAGVALVVGRIRRLGLDVVLNKSEALWFHGPRGAPPVDTHIVVGGVRIGVGVQLKYLGLVLDSRWAFRAHFAELVPRLMGTAGSLSRLLPNIGGPDQVVRRLYAGVGHPRISHRLFEAACVLAGTPPWELEAESLAADYRWRSELRARGVARVPESELRARKAHSRRSVLESWSRRLANPTWGLRTVEAVYPVFDDWVNRGEGRLTFRLVQVLTGHGCFGKYLRRIGAEPTTRCHHCGHDLDTVEHTLAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGSDESWKACSTSASAPSRRRRRRGE

Uniprot

A0A0J7NFZ0 A0A0J7KRB8 A0A0J7KF91 A0A0J7KIS5 J9JY94

EMBL

LBMM01005474 KMQ91485.1 LBMM01003988 KMQ92922.1 LBMM01008445 KMQ88871.1 + More
LBMM01006977 KMQ90149.1 ABLF02007989

Proteomes

UP000036403 UP000007819

Pfam

PF00078 RVT_1 + More
PF14529 Exo_endo_phos_2

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom

SUPFAM

SSF57756 SSF57756 + More
SSF56219 SSF56219

Gene 3D

3.60.10.10

ProteinModelPortal

A0A0J7NFZ0 A0A0J7KRB8 A0A0J7KF91 A0A0J7KIS5 J9JY94

PDB

1WDU E-value=4.29005e-11, Score=169

KEGG

105842864 no KO assigned | (RefSeq) skin secretory protein xP2-like

GO

GO:0008270 GO:0003676 GO:0003964 GO:0016021

Length:

1416

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0310899999999999

Exp number, first 60 AAs:

0.00315

Total prob of N-in:

0.00037

outside

1 - 1416

Pi

2.332779

Theta

119.183563

Tajima's D

2.601363

CLR

0.000644

CSRT

0.951652417379131

Interpretation

Possibly Balancing Selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree