Silkworm Genome Informatics Database

Gene

KWMTBOMO10552

Pre Gene Modal

BGIBMGA007141

Annotation

PREDICTED:_protein_tweety-like_[Bombyx_mori]

Location

Bomo_Chr17(+):13867438-13873354 View in EpiBrowser

Full name

Protein tweety homolog

Location in the cell

Extracellular Reliability : 1.689 PlasmaMembrane Reliability : 1.666

CDS

ATGGTGTGCGTACGTGCGCAGGTGTGCGCGCTGGGCGGGCTGGTGTCGTGCTGGGCGGGCGCGGCGCTGCTGGCGGCGGGCGCGGTGTCGGCGGCGGACGCGTGCCTCGACCCCGCCGCCGCGCTCGCGCACCACGCGCCGCACCGCCTCTCGCCCGACATGGTCCACTACTACCTGTCGTGCAAGGTGTCCCGCGAGAACGTCCTGACGGCTGAGCTGCGGAACGCCCAGCGTGCCGTGGTGGCGGTGCGGCAGGCGCTGGCCGTGCTGACCCGGGGCGCCCCGCAGCTCTTCAACGACCCCGGTCTGCAGCCAGCCCTCGGAGCCCTGGGCGCCGGTACCGGGGAGGCCGAGCGTGCACTAGTGTCGCTGAGCGGAGCCCTAGAGTGCCGCATGGCCAGAGCTTACTTCGTGGCAGGAGCACGCGCGGCTTGTGATGCTGGATTACAGGCATTAACCCTCCAGTTGTTGGCGGCGGTGGCGGCCGGTTTCCTCTTCACTGCAATCGTCCTGGTCGATTCTCACGCTTGGATCTATATCAACACAAAACGCAGCGGCACCGGCGAGGAGCAGGCTCCGTTCCTGTCGTCGGGCTCCAGTGCGGCCACGCGCTCCCTGCCGCGACCCGCCCCCTTCCCCAACGGGAAACCCCCTTCGTACAGCGCCGCCGTGCAGCTCATGGACTTGACCCTGGCCGACTCGCACCGTCCCAGTTCCCCGTGTGGCGGCAGGTCGCGAATGTCCGGCAGCGCCACCCTGGGTCGCGGGGCCACGGGGGGCGGGGCGGGGGCCGCGGCGCTGGGCGGGGCCGCCACCCTGGGTAGAGCGCACAACGGCAAGTACGCGACCCTCAGCAAGCAGTGCAAGACGCTGGAGAGCAACGACTTCTACTGA

Protein

MVCVRAQVCALGGLVSCWAGAALLAAGAVSAADACLDPAAALAHHAPHRLSPDMVHYYLSCKVSRENVLTAELRNAQRAVVAVRQALAVLTRGAPQLFNDPGLQPALGALGAGTGEAERALVSLSGALECRMARAYFVAGARAACDAGLQALTLQLLAAVAAGFLFTAIVLVDSHAWIYINTKRSGTGEEQAPFLSSGSSAATRSLPRPAPFPNGKPPSYSAAVQLMDLTLADSHRPSSPCGGRSRMSGSATLGRGATGGGAGAAALGGAATLGRAHNGKYATLSKQCKTLESNDFY

Description

Probable chloride channel.

Similarity

Belongs to the tweety family.

Uniprot

H9JC96 A0A194RIK6 A0A212EI30 A0A139WDW4 A0A1W4XGE7 A0A1Y1N3B3 + More
A0A1B6MH53 A0A1Q3G5A8 A0A1W7R5A1 Q16RK1 A0A3Q0JC59

Pubmed

19121390 26354079 22118469 18362917 19820115 28004739 + More
17510324

EMBL

BABH01015117 BABH01015118 BABH01015119 KQ460124 KPJ17658.1 AGBW02014713 + More
OWR41134.1 KQ971357 KYB26140.1 GEZM01013662 GEZM01013661 GEZM01013660 GEZM01013659 GEZM01013657 JAV92394.1 GEBQ01004700 JAT35277.1 GFDL01000053 JAV34992.1 GEHC01001450 JAV46195.1 CH477708 EAT37019.1

Proteomes

UP000005204 UP000053240 UP000007151 UP000007266 UP000192223 UP000008820 + More
UP000079169

PRIDE

H9JC96

Pfam

PF04906 Tweety

Interpro

IPR006990 Tweety

CDD

cd07912 Tweety_N

ProteinModelPortal

H9JC96 A0A194RIK6 A0A212EI30 A0A139WDW4 A0A1W4XGE7 A0A1Y1N3B3 + More
A0A1B6MH53 A0A1Q3G5A8 A0A1W7R5A1 Q16RK1 A0A3Q0JC59

KEGG

101747053 K22641 protein tweety | (RefSeq) protein tweety-like

GO

GO:0034707 GO:0005254 GO:0005886 GO:0005229 GO:0072320 GO:0016021

PANTHER

PTHR12424

Subcellular location

Cell membrane

SignalP

Position: 1 - 31, Likelihood: 0.680982

Length:

297

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

53.2250300000001

Exp number, first 60 AAs:

21.242

Total prob of N-in:

0.94127

POSSIBLE N-term signal

sequence

inside

1 - 6

TMhelix

7 - 29

outside

30 - 155

TMhelix

156 - 178

inside

179 - 297

Pi

238.186749

Theta

148.233726

Tajima's D

2.668807

CLR

0.134581

CSRT

0.96005199740013

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics