SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10551
Pre Gene Modal
BGIBMGA007141
Annotation
PREDICTED:_protein_tweety-like_[Bombyx_mori]
Full name
Protein tweety homolog       + More
Protein tweety      
Location in the cell
PlasmaMembrane   Reliability : 4.397
 

Sequence

CDS
ATGGGCGCGTCGGGCGGCTCTGACGAGTACACGCCTCCGCGTCTCTCGCGGCTGCTGCACGCGGTGCCGCACATCAACGTGACCCTGCACCGTGTCAACGACACCTTCGCTCCAGACTCGCCGGTTTACCTCGAGAGCCTTGGAATTATCGGTTCTATACCCGGCGCTTGGCTTATACTGACTCTGCTCGTGCTGTTGATTTATCTGCTGACTAGATGCTGCGACAGGAAACAACGACCGCCCAAGAGTATCACAGCTCTCAAGATAACTCTGATGTTCCTATCGGTGTTGTGTTGCGGTGCTATCGGCGTTGGTCTCTTCGGAAACGACGACCTTCACAACGCCATGCTGCAGAGCATCCAAGCCGGGAACCAGCTGGCCGCACTCGTCAACACCGTTAAAAACCAAGTCAGTATCGCTCCAACATTTTTTTTTATTGCCTAG
Protein
MGASGGSDEYTPPRLSRLLHAVPHINVTLHRVNDTFAPDSPVYLESLGIIGSIPGAWLILTLLVLLIYLLTRCCDRKQRPPKSITALKITLMFLSVLCCGAIGVGLFGNDDLHNAMLQSIQAGNQLAALVNTVKNQVSIAPTFFFIA

Summary

Description
Probable chloride channel.
Non-essential protein that probably acts as a chloride channel.
Similarity
Belongs to the tweety family.
Keywords
Cell membrane   Chloride   Chloride channel   Complete proteome   Glycoprotein   Ion channel   Ion transport   Membrane   Reference proteome   Transmembrane   Transmembrane helix   Transport  
Feature
chain  Protein tweety
EMBL
BABH01015117    BABH01015118    BABH01015119    ODYU01004801    SOQ45057.1    AGBW02014713    + More
OWR41134.1    NWSH01000133    PCG79207.1    KQ459603    KPI93142.1    KQ460124    KPJ17658.1    RSAL01000385    RVE42035.1    DS231855    EDS38243.1    GEZM01013662    GEZM01013661    GEZM01013660    GEZM01013659    GEZM01013657    JAV92394.1    KQ971357    KYB26140.1    GEZM01013658    GEZM01013655    JAV92396.1    GBHO01006776    GBHO01006774    GBHO01006773    JAG36828.1    JAG36830.1    JAG36831.1    GBRD01001167    JAG64654.1    GDHF01027732    JAI24582.1    GBRD01001166    JAG64655.1    GBRD01001169    JAG64652.1    GEBQ01029626    JAT10351.1    GDHC01007671    JAQ10958.1    GFDL01000053    JAV34992.1    APCN01004860    ATLV01023342    KE525342    KFB48947.1    GECZ01024666    GECZ01008950    JAS45103.1    JAS60819.1    GECU01035177    GECU01033295    GECU01012296    GECU01012085    JAS72529.1    JAS74411.1    JAS95410.1    JAS95621.1    CH477708    EAT37019.1    AXCN02002234    GECU01029891    JAS77815.1    GECU01012736    JAS94970.1    AXCM01001137    AAAB01008963    EAA12060.5    GEDC01002777    GEDC01000876    JAS34521.1    JAS36422.1    APGK01058659    KB741291    ENN70542.1    GEDC01002455    GEDC01002357    JAS34843.1    JAS34941.1    GECL01001829    JAP04295.1    GBBI01003173    JAC15539.1    GDKW01003237    JAI53358.1    GFTR01006669    JAW09757.1    AE014298    AGB95605.1    CH933810    KRF94127.1    CM000162    KRK07102.1    CH954180    KQS30572.1    GDHF01012769    JAI39545.1    KRF94128.1    GAMC01013916    JAB92639.1    GBXI01004860    JAD09432.1    ADMH02000145    ETN67620.1    JXJN01010519    CCAG010009690    CVRI01000020    CRK91172.1    PYGN01001392    PSN35144.1    JRES01000984    KNC26439.1    KK852421    KDR24275.1    CH902625    KPU75376.1    QOIP01000001    RLU26343.1    ADTU01005934    ADTU01005935    GDHF01003076    JAI49238.1    CH963851    EDW75009.2    CH379064    EAL31684.2    CH479197    EDW27799.1    EDV34971.1    AGB95607.1    EDX03089.1    AGB95604.1    AF017777    AF184227    CH480823    EDW56372.1    EDV47611.1    CH940651    EDW65227.1    KRF82137.1    CH916370    EDV99550.1    OUUW01000011    SPP86888.1    EDW07647.1    CP012528    ALC48790.1    GL450410    EFN80998.1    KQ435724    KOX78314.1    GL443604    EFN61814.1    GL762003    EFZ22472.1    GGFM01004272    MBW25023.1    DS235061    EEB11159.1    GGFL01001606    MBW65784.1   
Pfam
PF04906   Tweety
Interpro
IPR006990   Tweety       

Ontologies

Topology

Subcellular location
Cell membrane  
Length:
147
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
44.31944
Exp number, first 60 AAs:
12.94773
Total prob of N-in:
0.00048
POSSIBLE N-term signal
sequence
outside
1  -  48
TMhelix
49  -  71
inside
72  -  83
TMhelix
84  -  106
outside
107  -  147
 
 

Population Genetic Test Statistics

Pi
150.463597
Theta
138.604093
Tajima's D
0.528057
CLR
0.377012
CSRT
0.524673766311684
Interpretation
Uncertain
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