Gene

KWMTBOMO10542  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006977

Annotation

putative_Short-chain_specific_acyl-CoA_dehydrogenase?_mitochondrial_precursor_[Danaus_plexippus]

Location

Bomo_Chr17(-):13615961-13635281      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.773

CDS

ATGGCAACAGGTGTCGCACTAAAGTCTATAAGACTTAATAATTTGCTCTCGTCGTCTTGCGTGAAGGCGTTAGCGTCCCAATGCAGAAGCTTCACGAGTCAGCTGACGGAACAACAAAAAGAATATCAAGCATTGTCCAAGGAATTCGCCGACAAATACTTGAAGCCGAACGCAGCGAAGCATGACTTGGAAGGACGGTTCCCTTTTGATGTGATAAAAAAGCTGACAGCCACAGGCCTGATGGGCGCCTGCGTCGACGAAGAATACGGTGGCAAGGGTCTAGACTACTTGACACTGGCCGTCGCCGTGGAGGAGCTGTCCCGGGGCTGCGCCAGTACTGGCATGATCGCATCCATTCACAACTTCCTGTACGCGAACTTGGTGAACGAAAAGGGAACTCCCGAACAGAAGGAACTGTTCCTGAGGGACTACACTAAGGGCTCTCTAGGATGCTTCGCCCTCAGTGAACCTGGTGCAGGCACAGACGTGGCCAGTATACGAACGAGGGCGAAGAAGGACGGCGACCATTGGATTCTGAACGGCGAGAAGAGCTGGGTCACGACCGCCGTCGAGGGATCCGCTAATATCATATTCGCGACCTTTGACCCCGAGCTCAAGCACAAAGGAATAGCTTGTTTCCTTGTCCCTATGGACGTCGATGGCGTATTCAGAGGACGGAAAGAGGCCATAATGAGTGTCAGGGCCGTGACGTCATGCGCCCTGACCCTCGAAGACGTGAGGGTGCCGCAGAGCTACCTGGTCGGGGAGCCGGGCGAAGGGTTCAAGATCGCCATGGAGCAGCTGGACCAGGGACGGATTGGGATCGCCGCCCATGCTGTGGGAATAGCACAGGCGGCTCTGGACACCGCGATCAATTACGCCAAAGAGAGACAGGCGTTTGGGAAGCCCCTCTCCCGGTTGCCTTCCGTCAAGGATCGTTTGACGGACATGTGCATACTGGTGGAGACGGCTCGGCTGGCGACATACAGGGCGGCGACCGAGGTCAGCACCAAGAACAGCGCCATGGCGAAGTACATCGCGGGCCGGAACGCGGCCGCCGTGGCCGACCACTGCGTGCAGATCTTGGGGGGCAAGGGACTCTCCACACGATACTCGGCTGAGAGACATTACAGGGATGCCAGAGGTACTCAAATATACGGAGGAGTCACGGACATACAGAAGCGACTAGTTGGTCACTTCCTTCTGAAAGAGCACGACGCGCTATGA

Protein

MATGVALKSIRLNNLLSSSCVKALASQCRSFTSQLTEQQKEYQALSKEFADKYLKPNAAKHDLEGRFPFDVIKKLTATGLMGACVDEEYGGKGLDYLTLAVAVEELSRGCASTGMIASIHNFLYANLVNEKGTPEQKELFLRDYTKGSLGCFALSEPGAGTDVASIRTRAKKDGDHWILNGEKSWVTTAVEGSANIIFATFDPELKHKGIACFLVPMDVDGVFRGRKEAIMSVRAVTSCALTLEDVRVPQSYLVGEPGEGFKIAMEQLDQGRIGIAAHAVGIAQAALDTAINYAKERQAFGKPLSRLPSVKDRLTDMCILVETARLATYRAATEVSTKNSAMAKYIAGRNAAAVADHCVQILGGKGLSTRYSAERHYRDARGTQIYGGVTDIQKRLVGHFLLKEHDAL

Cofactor

FAD

Similarity

Belongs to the acyl-CoA dehydrogenase family.

Uniprot

H9JBT2   A0A2H1VWP4   A0A212EI46   A0A2A4JTN9   A0A194PJB9   A0A194RJN5   + More
U5ETE1   A0A1W4WE21   A0A067QRN4   A0A2J7RDZ8   Q178X6   A0A182MIJ7   A0A1Q3FIW8   A0A182U1T9   A0A182X5Z2   A0A0P6IYW3   A0A182YQH9   D6WXB7   A0A1S4GYQ2   Q7Q8J0   A0A182RK82   A0A1J1I296   A0A182KMF8   A0A182IBM4   A0A182UZW0   A0A182WFJ6   A0A182KFN6   A0A182P4B5   A0A182QMC9   A0A068FL57   H3BF73   A0A091IGT6   A0A3L8S6H2   A0A1J1J5M8   A0A182NTC8   F1PLG8   F1PZX6   A0A3S2LN21   A0A084VFF0   A0A210PXG2   A0A3Q7U1V0   H0ZH79   U3JYI6   S4P5F9   A0A2U3Y2I2   H9JUC7   A0A091ELE1   A0A2M4BR67   A0A1Y1KIB4   A0A3M0K425   A0A2Y9I5F2   A0A1L8E2B4   A0A1L8E378   T1GCW4   A0A2Y9KUZ4   H0VTB8   A0A182Q2T6   M1EFI7   A0A2M3ZHR9   A0A218V3B7   M3XVY8   A0A182F884   U6DB06   C1C4G0   A0A250YHT4   A0A2M3ZI48   A0A2M4BPU5   A0A2H1V0Y7   A0A2M3ZI12   Q5ZL56   A0A1B0D978   A0A2E6VVC6   A0A3P4SAI7   A0A336MX34   A0A2A4K8V0   A0A3Q7RX23   A0A2M4BR37   A0A226P0H1   D2I154   Q6P324   A0A3Q7X8Z0   B0WUQ6   A0A182JR73   A0A151N4Z1   G1LPC8   A0A1B0GIU4   M3VYF9   A0A0K8TN25   A0A2U3VNP3   A0A091S4N4   Q294T1   B4GMN1   A0A1Y9H2B2   V9KL54   I3N2U4   A0A1A6HQR2   A0A093Q1H8   Q7T0Y5  

Pubmed

19121390    22118469    26354079    24845553    17510324    26999592    + More
25244985    18362917    19820115    12364791    20966253    26385554    9215903    30282656    16341006    24438588    28812685    20360741    23622113    28004739    21993624    23236062    28087693    15592404    15642098    29337314    24621616    20010809    20431018    22293439    17975172    26369729    15632085    17994087    24402279    27762356   

EMBL

BABH01015092    BABH01015093    BABH01015094    ODYU01004896    SOQ45245.1    AGBW02014713    + More
OWR41141.1    NWSH01000689    PCG74770.1    KQ459603    KPI93133.1    KQ460124    KPJ17649.1    GANO01002825    JAB57046.1    KK853408    KDR07800.1    NEVH01005280    PNF39059.1    CH477357    EAT42766.1    AXCM01005597    GFDL01007577    JAV27468.1    GDUN01000885    JAN95034.1    KQ971361    EFA08007.1    AAAB01008944    EAA10182.4    CVRI01000038    CRK94413.1    APCN01000710    AXCN02000715    KJ622078    AID66668.1    AFYH01006469    AFYH01006470    AFYH01006471    KL218758    KFP07824.1    QUSF01000052    RLV97765.1    CVRI01000070    CRL07274.1    AAEX03014741    RSAL01000051    RVE50229.1    ATLV01012386    KE524787    KFB36694.1    NEDP02005420    OWF41152.1    ABQF01029530    ABQF01029531    AGTO01000187    GAIX01005569    JAA86991.1    BABH01038556    KK718703    KFO57881.1    GGFJ01006353    MBW55494.1    GEZM01086635    JAV59136.1    QRBI01000121    RMC05974.1    GFDF01001201    JAV12883.1    GFDF01001139    JAV12945.1    CAQQ02146330    CAQQ02146331    AAKN02007158    AXCN02000031    JP004995    AER93592.1    GGFM01007353    MBW28104.1    MUZQ01000064    OWK60221.1    AEYP01033950    HAAF01007982    CCP79806.1    BT081739    ACO51870.1    GFFW01001699    JAV43089.1    GGFM01007394    MBW28145.1    GGFJ01005949    MBW55090.1    ODYU01000178    SOQ34523.1    GGFM01007401    MBW28152.1    AADN05000505    AC160646    AJ719878    CAG31537.1    AJVK01004271    PBLQ01000055    MBL92899.1    CYRY02047052    VCX42928.1    UFQS01002855    UFQT01002855    SSX14769.1    SSX34161.1    NWSH01000035    PCG80426.1    GGFJ01006323    MBW55464.1    AWGT02000222    OXB73321.1    GL193954    EFB23137.1    AAMC01008483    AAMC01008484    BC064210    CR848265    AAH64210.1    CAJ83244.1    DS232108    EDS35042.1    AKHW03004053    KYO31685.1    ACTA01052563    AJWK01017657    AANG04002472    GDAI01002050    JAI15553.1    KK941339    KFQ50934.1    CM000070    EAL28883.2    CH479185    EDW38105.1    JW866404    AFO98921.1    AGTP01090458    LZPO01017311    OBS80798.1    KL671413    KFW82501.1    BC055986    BC084756    CM004466    AAH55986.1    AAH84756.1    OCU01793.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053268    UP000053240    UP000192223    + More
UP000027135    UP000235965    UP000008820    UP000075883    UP000075902    UP000076407    UP000076408    UP000007266    UP000007062    UP000075900    UP000183832    UP000075882    UP000075840    UP000075903    UP000075920    UP000075881    UP000075885    UP000075886    UP000008672    UP000054308    UP000276834    UP000075884    UP000002254    UP000283053    UP000030765    UP000242188    UP000286640    UP000007754    UP000016665    UP000245341    UP000052976    UP000269221    UP000248481    UP000015102    UP000248482    UP000005447    UP000197619    UP000000715    UP000069272    UP000000539    UP000092462    UP000286641    UP000198419    UP000008143    UP000286642    UP000002320    UP000050525    UP000008912    UP000092461    UP000011712    UP000245340    UP000001819    UP000008744    UP000005215    UP000092124    UP000053258    UP000186698   

PRIDE

H9JBT2    F1PZX6    H9JUC7   

Pfam

PF02770   Acyl-CoA_dh_M        + More
PF02771   Acyl-CoA_dh_N
PF00441   Acyl-CoA_dh_1
PF13306   LRR_5
PF13855   LRR_8

Interpro

IPR006089   Acyl-CoA_DH_CS        + More
IPR013786   AcylCoA_DH/ox_N       
IPR037069   AcylCoA_DH/ox_N_sf       
IPR036250   AcylCo_DH-like_C       
IPR006091   Acyl-CoA_Oxase/DH_cen-dom       
IPR009100   AcylCoA_DH/oxidase_NM_dom       
IPR009075   AcylCo_DH/oxidase_C       
IPR026906   LRR_5       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001611   Leu-rich_rpt       
IPR032675   LRR_dom_sf       

SUPFAM

SSF56645   SSF56645        + More
SSF47203   SSF47203       

Gene 3D

1.10.540.10     3.80.10.10    

ProteinModelPortal

H9JBT2   A0A2H1VWP4   A0A212EI46   A0A2A4JTN9   A0A194PJB9   A0A194RJN5   + More
U5ETE1   A0A1W4WE21   A0A067QRN4   A0A2J7RDZ8   Q178X6   A0A182MIJ7   A0A1Q3FIW8   A0A182U1T9   A0A182X5Z2   A0A0P6IYW3   A0A182YQH9   D6WXB7   A0A1S4GYQ2   Q7Q8J0   A0A182RK82   A0A1J1I296   A0A182KMF8   A0A182IBM4   A0A182UZW0   A0A182WFJ6   A0A182KFN6   A0A182P4B5   A0A182QMC9   A0A068FL57   H3BF73   A0A091IGT6   A0A3L8S6H2   A0A1J1J5M8   A0A182NTC8   F1PLG8   F1PZX6   A0A3S2LN21   A0A084VFF0   A0A210PXG2   A0A3Q7U1V0   H0ZH79   U3JYI6   S4P5F9   A0A2U3Y2I2   H9JUC7   A0A091ELE1   A0A2M4BR67   A0A1Y1KIB4   A0A3M0K425   A0A2Y9I5F2   A0A1L8E2B4   A0A1L8E378   T1GCW4   A0A2Y9KUZ4   H0VTB8   A0A182Q2T6   M1EFI7   A0A2M3ZHR9   A0A218V3B7   M3XVY8   A0A182F884   U6DB06   C1C4G0   A0A250YHT4   A0A2M3ZI48   A0A2M4BPU5   A0A2H1V0Y7   A0A2M3ZI12   Q5ZL56   A0A1B0D978   A0A2E6VVC6   A0A3P4SAI7   A0A336MX34   A0A2A4K8V0   A0A3Q7RX23   A0A2M4BR37   A0A226P0H1   D2I154   Q6P324   A0A3Q7X8Z0   B0WUQ6   A0A182JR73   A0A151N4Z1   G1LPC8   A0A1B0GIU4   M3VYF9   A0A0K8TN25   A0A2U3VNP3   A0A091S4N4   Q294T1   B4GMN1   A0A1Y9H2B2   V9KL54   I3N2U4   A0A1A6HQR2   A0A093Q1H8   Q7T0Y5  

PDB

1JQI     E-value=1.54776e-85,     Score=806

KEGG

101740386    no KO assigned | (RefSeq) short-chain specific acyl-CoA dehydrogenase, mitochondrial-like

GO

GO:0003995   GO:0050660   GO:0016627   GO:0016021   GO:0046359   GO:0004085   GO:0005739   GO:0016491   GO:0005654   GO:0033539   GO:0008152   GO:0006284   GO:0003906   GO:0005634   GO:0006285   GO:0019104   GO:0003824   GO:0055114  

Length:

408

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03151

Exp number, first 60 AAs:

0.00058

Total prob of N-in:

0.00585

outside

1  -  408

 

 

Pi

30.050296

Theta

167.756658

Tajima's D

-1.921934

CLR

1675.426321

CSRT

0.0173991300434978

Interpretation

Possibly Positive selection