Gene

KWMTBOMO10541  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006978

Annotation

Leucine-rich_repeat-containing_G-protein_coupled_receptor_5_[Papilio_xuthus]

Location

Bomo_Chr17(-):13598507-13610671      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.384

CDS

ATGCTTCTAAAATATTTTTTGAGTTTTTTATTTTTATTCAAACACGTAATCGGCCAGGACGAATTGGTGACTGAATCCGTATTGAATTTGAAACAAGTGTGCGATTATTGTACGTGCAGTGAGATATCGGATATAGAGAGTTCGCATTTAGTGTTGAACATATTGTGTTCGGAGTTTGACAGGACCGCGGAACTGTCCGATCTGGACAAAATCGCTTGGCCTCCAAATCCGAACGGACTGAAGATATCCGCTTCGTTTGAAGGGATCGGACTCAGTACACTTGGCAAATTACCGCCAAATTCGCAAGTGGAAACATTAAAATTTATCAACAATGGCATCAAGACGTACTGGCCAGATCCATTTAGCGACACGCCAACCCTCAAGCGACTATCGTTATCGCAAAACGACCTAGTAGAGGTCACGCCCGACCTATTCACAAACATCGACTACCTGGAAGAACTGGATTTGTCTTACAACAAATTACAGAATTTCAATCCTTTCGATTTTAAGCATCTCAAGCATTTAAAGCGATTGAATTTGCAAAGTAATCAGATAAAGAAAATACCGGTTGAAGCGCTGCAGCCGTTGGTGGCGCTTGAAGATTTAGATTTGAGCAAAAATGGAATTTACGATTTGATACTGCCGAAAGATACAAATGCGCTTTCTGGATTGAAGAGGCTTTCTTTGAGCGGAAATAGAATTCGATCAATAGTGAAGAGTTCTTTTCCTGTCGATAATAATATAGAACTTCTGGACTTATCGAACAATATAATAGAAATAGTTGAAGAGGACTCTTTTCTATCGTTTTCCAACTTAAGAGAACTTAATCTTGGTCAGAACAACATTACCCTAGTGTTTTCATTGCCAGTAACACTGCAGATTGCCATACTAAAGATAAATACGTTGTACCATTGGCCGAAATTTCCTGTTGGTATCAAATATATTGATTTGTCGTACAATAGACTGTCGGAAGTGTATGATGAGAGCGTTGTTAATTTCGAAAGTTTAGAGGTTCTAAACATCGGCGGTAATCAAATCAAAGAAATGAATATAGAAAAGAAGTTACCGAATTTATACACGTTAGACCTATCATACAATCTAATAGCGGAAATACCAAAGACGCTGAATGCGCAGTTTTTCCCTAATTTAGACGAATTACGTTTAGATGGCAACCCGATCGAGACGGTTTATTTTAAAAATATATTGGCTTTAAAACGTTTGTATATGAATGAGTTGAATAAATTGGTTGTGGTTGATGAGAAAGCTTTTAGTAATGTGGTGGGTCGAGGGATGGACGAGGGGGGAGAGGAACTGAACTGCTTCTCATTGTACTTGTCTAATTGTCCTGCTTTGACCGAGATAAAGGAGGGCGCTTTTGACGGGACCTCTTTGTGCACGCTGGACATAAGCAAGAACAACTTGAGCCATTTATCCAAGAATCTACTAGACTGGAGCATTGCGACGGAAGGCATTAATCTACAACACAATCCTTGGCACTGCTCCTGCGACATGCAATGGGTGGTGGACGATGTCCTTCCGCAACTGTACTATACCAATAACTCCAGACTCATGGACGACTTGAGGTGCGGTTCTCCCCGAGGATACGAAGGTCTCCGACTAGTGCACTGGTACAACTGGACAGCGCAAGCGATGTGCAGCGACGTGCTAGACTTGGAACGATCCGGAGCTCACGGCAATTTCATGATGGAGCCCTCGTCGGAAAGTCCTAGAGTTAGCTCCCTGACTTTAATCTTAGCGGCATGCATTATTGTATCCCTCCTCGTTGCTATAGCTCTGACAGTATACCTCGTGAAGACCAGAAAGAAATACAGAATACGACAAGCAGCAATGAAAAGGAAAAGACAAAGCGACCTAGACTTAAGACATTCGAATGGAGTGCAAAAAGAACAGTTCTCAGCGCTGAACAAAGTTTAG

Protein

MLLKYFLSFLFLFKHVIGQDELVTESVLNLKQVCDYCTCSEISDIESSHLVLNILCSEFDRTAELSDLDKIAWPPNPNGLKISASFEGIGLSTLGKLPPNSQVETLKFINNGIKTYWPDPFSDTPTLKRLSLSQNDLVEVTPDLFTNIDYLEELDLSYNKLQNFNPFDFKHLKHLKRLNLQSNQIKKIPVEALQPLVALEDLDLSKNGIYDLILPKDTNALSGLKRLSLSGNRIRSIVKSSFPVDNNIELLDLSNNIIEIVEEDSFLSFSNLRELNLGQNNITLVFSLPVTLQIAILKINTLYHWPKFPVGIKYIDLSYNRLSEVYDESVVNFESLEVLNIGGNQIKEMNIEKKLPNLYTLDLSYNLIAEIPKTLNAQFFPNLDELRLDGNPIETVYFKNILALKRLYMNELNKLVVVDEKAFSNVVGRGMDEGGEELNCFSLYLSNCPALTEIKEGAFDGTSLCTLDISKNNLSHLSKNLLDWSIATEGINLQHNPWHCSCDMQWVVDDVLPQLYYTNNSRLMDDLRCGSPRGYEGLRLVHWYNWTAQAMCSDVLDLERSGAHGNFMMEPSSESPRVSSLTLILAACIIVSLLVAIALTVYLVKTRKKYRIRQAAMKRKRQSDLDLRHSNGVQKEQFSALNKV

Uniprot

A0A2H1VYE9   A0A2A4JSG3   A0A194PII7   A0A194RJN5   A0A212EI31   A0A3S2LAS8   + More
A0A1L8DKP9   A0A1S4FBR2   Q178X4   A0A1B0CQW7   A0A1W7R8Q5   A0A1J1J5Q2   B0WUQ8   A0A1Q3FHZ2   A0A182G219   A0A154P130   A0A088A587   A0A1B6D6Q5   A0A2A3ET66   A0A2J7RDM7   A0A0C9QCN2   A0A0C9R774   A0A1B6GM32   A0A1B6I1H0   A0A1B6L2C9   A0A026W4T7   A0A182WGK9   A0A182MPE7   C3ZL09   W4YPB3   A0A182HRV5   K1P9F1   A0A210QFY2   A0A182U194   A0A0L8GXS8  

Pubmed

26354079    22118469    17510324    26483478    24508170    18563158    + More
22992520    28812685   

EMBL

ODYU01004896    SOQ45244.1    NWSH01000689    PCG74769.1    KQ459603    KPI93132.1    + More
KQ460124    KPJ17649.1    AGBW02014713    OWR41142.1    RSAL01000062    RVE49541.1    GFDF01007062    JAV07022.1    CH477357    EAT42768.1    AJWK01024152    AJWK01024153    AJWK01024154    AJWK01024155    GEHC01000107    JAV47538.1    CVRI01000066    CRL06217.1    DS232108    EDS35044.1    GFDL01007854    JAV27191.1    JXUM01006532    KQ560217    KXJ83773.1    KQ434783    KZC04840.1    GEDC01015934    JAS21364.1    KZ288191    PBC34492.1    NEVH01005288    PNF38930.1    GBYB01012178    JAG81945.1    GBYB01012179    JAG81946.1    GECZ01023033    GECZ01019050    GECZ01018473    GECZ01006281    JAS46736.1    JAS50719.1    JAS51296.1    JAS63488.1    GECU01026972    JAS80734.1    GEBQ01022095    JAT17882.1    KK107419    EZA51072.1    AXCM01003106    GG666640    EEN46691.1    AAGJ04005476    APCN01001759    JH818836    EKC20407.1    NEDP02003828    OWF47667.1    KQ420075    KOF81395.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000007151    UP000283053    UP000008820    + More
UP000092461    UP000183832    UP000002320    UP000069940    UP000249989    UP000076502    UP000005203    UP000242457    UP000235965    UP000053097    UP000075920    UP000075883    UP000001554    UP000007110    UP000075840    UP000005408    UP000242188    UP000075902    UP000053454   

Pfam

PF13855   LRR_8        + More
PF02771   Acyl-CoA_dh_N
PF00441   Acyl-CoA_dh_1
PF13306   LRR_5
PF02770   Acyl-CoA_dh_M
PF13516   LRR_6
PF01399   PCI
PF05725   FNIP
PF00560   LRR_1
PF12799   LRR_4
PF01582   TIR

Interpro

IPR001611   Leu-rich_rpt        + More
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR032675   LRR_dom_sf       
IPR026906   LRR_5       
IPR013786   AcylCoA_DH/ox_N       
IPR006089   Acyl-CoA_DH_CS       
IPR037069   AcylCoA_DH/ox_N_sf       
IPR036250   AcylCo_DH-like_C       
IPR006091   Acyl-CoA_Oxase/DH_cen-dom       
IPR009100   AcylCoA_DH/oxidase_NM_dom       
IPR009075   AcylCo_DH/oxidase_C       
IPR000483   Cys-rich_flank_reg_C       
IPR037750   COPS2       
IPR000717   PCI_dom       
IPR036390   WH_DNA-bd_sf       
IPR008615   FNIP       
IPR025875   Leu-rich_rpt_4       
IPR009003   Peptidase_S1_PA       
IPR035897   Toll_tir_struct_dom_sf       
IPR000157   TIR_dom       

SUPFAM

SSF47203   SSF47203        + More
SSF56645   SSF56645       
SSF46785   SSF46785       
SSF50494   SSF50494       
SSF52200   SSF52200       

Gene 3D

3.80.10.10     1.10.540.10     3.40.50.10140    

ProteinModelPortal

A0A2H1VYE9   A0A2A4JSG3   A0A194PII7   A0A194RJN5   A0A212EI31   A0A3S2LAS8   + More
A0A1L8DKP9   A0A1S4FBR2   Q178X4   A0A1B0CQW7   A0A1W7R8Q5   A0A1J1J5Q2   B0WUQ8   A0A1Q3FHZ2   A0A182G219   A0A154P130   A0A088A587   A0A1B6D6Q5   A0A2A3ET66   A0A2J7RDM7   A0A0C9QCN2   A0A0C9R774   A0A1B6GM32   A0A1B6I1H0   A0A1B6L2C9   A0A026W4T7   A0A182WGK9   A0A182MPE7   C3ZL09   W4YPB3   A0A182HRV5   K1P9F1   A0A210QFY2   A0A182U194   A0A0L8GXS8  

PDB

4KNG     E-value=2.77661e-18,     Score=228

KEGG

101740253    no KO assigned | (RefSeq) leucine-rich repeat-containing G-protein coupled receptor 5-like

GO

GO:0016021   GO:0003995   GO:0050660   GO:0005737   GO:0008180   GO:0004180   GO:0005615   GO:0031012   GO:0007165   GO:0005515   GO:0008270   GO:0051539   GO:0003677   GO:0006284   GO:0003906   GO:0005634   GO:0006285   GO:0019104   GO:0003824  

PANTHER

PTHR10678:SF3  

Subcellular location

Cytoplasm  

SignalP

Position:   1 - 18,         Likelihood:  0.975988

 

 

Length:

644

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.95663

Exp number, first 60 AAs:

0.00254

Total prob of N-in:

0.00046

outside

1  -  581

TMhelix

582  -  604

inside

605  -  644

 

 

Pi

211.816312

Theta

209.422666

Tajima's D

-0.85324

CLR

46.255045

CSRT

0.167491625418729

Interpretation

Uncertain