SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10533
Annotation
reverse_transcriptase_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.569 Nuclear   Reliability : 2.156
 

Sequence

CDS
ATGCCTCCCCTCGTACGCCCTTCAGGCCAACCACCGGCATTCGATGACGATGACAAGGCTGAGCTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAACACGCGGACCCCGAACACACCGAGTTAGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCGCCCTCGGACGCGTTACCCCCCATTACCACTGACGAAGTTAGAGACGCGATCCACAACCTCCAACCTAGGAAGGCACCCGGCTCCGACGGCATCCGCAACCGCGCGCTAAAACTCTTGCCAGTCCAACTGATAGCAATGTTGGCTACAATTTTAAATGCCGCTATGACGCACTGCATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGTATACATAAGCCGGGCAAACCGACAAACGAAACTTCTAGTTACCGTCCGATTAGTCTCCTCCCGACGATAGGAAAAATTTACGAACGGCTCCTTAGGAAACGCCTCTGGGATTTTGTTACCGCGAACAAAATTTTCATAGACGAACAGTTCGGATTCCGCTCTAAACACTCGTGCGTACAACAAGTGCACCGCCTCACGGAGCACATCCTGATAGGACTAAATAGGCGTAAACAAATCCCGACCGGCGCCCTCTTCTTCGACATCGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTAATTTACAAACTGTACAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTTCTTGTCGAACCGTTCGTTTCGATATCGAGTAGAGGGAACTCGTTCTCGTCCCCGTCAACTGACTGCCGGAGTCCCGCAAGGCTCCGCGCTCTCCCCGTTATTATTTAGTTTGTATATCAATGATATACCCCGGTCTCCGGAGACCCATCTAGCGCTCTTCGCCGATGACACGGCTATCTACTACTCGTGTAGGAAGATGTCGCTGCTTCATCGGCGACTCCAGATCGCAGTAGCCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATCAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAATACCACTTCGAGCATCCCACTCCCTAATAGGCGCGCAAACACCTCCGCCGTTAGCCCCGTCACTCTCTTTGGCCAGCCCATACCGTGGGCCTCGCAGGTCAAATACCTAGGCGTCACCCTCGACAGAGGGATGACATTCCGTCCCCATATTAAAACGGTACGCGACCGTGCCGCCTTCATATTAGGACGTCTCTACCCTATGCTTTGCAAGCGAAGCAAACTGTCCCTCCGTAATAAGGTAACTCTCTACAAAACTTGCATACGCCCCGTTATGACGTATGCAAGCGTAGTGTTCGCTCACGCAGCCCGCACCAACTTGAAGCCCCTTCAGGTTATTCAATCCCGATTCTGCAGGATAGCCGTCGGAGCACCATGGTTCCTGAGGAACGTGGATCTCCACGATGACCTGGAGCTTGACTCTGTCAGTAAGTATCTACAGTCGGCATCGCTGCGCCATTTTGAGAAGGCGGCACGACATGAGAACCCTCTCATCGTAGCCGCTGGAAATTACATACCCGACCCAGTAGACCGAATGGTAAACCGTCGACGTCGCCCAAAGCACGTCATTACGGATCCTCCTGATCCATTAACGGTGCTCTTAGGCACCACAAGCACCGGTCACCGTCCTCGTCGAACCCGTCGCTTGCGACGAAGGGCTCGACGAGCGAACTAA
Protein
MPPLVRPSGQPPAFDDDDKAELLADALQEQCTTSTQHADPEHTELVDREVERRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIRNRALKLLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLPTIGKIYERLLRKRLWDFVTANKIFIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTSSIPLPNRRANTSAVSPVTLFGQPIPWASQVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCKRSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKPLQVIQSRFCRIAVGAPWFLRNVDLHDDLELDSVSKYLQSASLRHFEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDPPDPLTVLLGTTSTGHRPRRTRRLRRRARRAN

Summary

EMBL
AB018558    BAA76304.1    U07847    AAA17752.1    AB055391    BAB21761.1    + More
KC165845    AFY12622.1    KQ459265    KPJ02064.1    KQ459259    KPJ02068.1    AF081103    AAC72921.1    AF081101    AAC72919.1    GEZM01008457    JAV94772.1    GALX01005359    JAB63107.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    GGMR01019198    MBY31817.1    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02003961    ABLF02059872    KK117880    KFM71667.1    GGMS01000737    MBY69940.1    ABLF02008933    ABLF02042518    ABLF02057746    GGMR01016114    MBY28733.1    GGMS01008766    MBY77969.1    GFTR01008038    JAW08388.1    GGMS01012005    MBY81208.1    ABLF02033757    GGMR01018716    MBY31335.1    GBBI01004571    JAC14141.1    GEZM01038405    JAV81653.1    GGMR01003407    MBY16026.1    GBBI01001646    JAC17066.1    GGMS01004685    MBY73888.1    NEVH01006721    PNF37225.1    RPOV01000134    RPJ78669.1    GBBI01004395    JAC14317.1    GEZM01053022    JAV74219.1    NEVH01012089    PNF30491.1    GGMS01002992    MBY72195.1    NEVH01026386    PNF14434.1    NEVH01007393    PNF35987.1    NEVH01003017    PNF40781.1    GFXV01007093    MBW18898.1    NEVH01007443    PNF35684.1    NEVH01020071    PNF21969.1    NWSH01000032    PCG80497.1    NEVH01023962    PNF17612.1    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01007578    PNF35646.1    GGMR01000676    MBY13295.1    NEVH01010546    PNF32261.1    GFXV01006424    MBW18229.1    GGMS01006359    MBY75562.1    NEVH01005938    PNF38077.1    LBMM01010106    KMQ87671.1    NEVH01006736    PNF36716.1    NEVH01023961    PNF17613.1    NEVH01001355    PNF42855.1    S59870    AAB26437.2    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GGMS01017914    MBY87117.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    NEVH01000280    PNF43672.1    GGMR01004661    MBY17280.1    ABLF02024246    NEVH01026106    PNF14658.1    NEVH01019964    PNF22161.1    PYGN01000192    PSN51582.1    ABLF02020655    ABLF02039168    ABLF02061060    LBMM01014395    KMQ85192.1    KK113014    KFM59099.1    GGFJ01002256    MBW51397.1    NEVH01014858    PNF27387.1    GFTR01008251    JAW08175.1    JXUM01155316    KQ572171    KXJ68070.1    NEVH01007838    PNF34986.1    NEVH01006754    PNF36554.1    GGFJ01002257    MBW51398.1    NEVH01002716    PNF41415.1    PCG80496.1    GBGD01000880    JAC88009.1    JXUM01014072    KQ560393    KXJ82651.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01011985    PNF31054.1    GBGD01000799    JAC88090.1    NEVH01017559    PNF23833.1    GFTR01008279    JAW08147.1    NEVH01019376    PNF22596.1    GGFJ01001842    MBW50983.1    GGFJ01001844    MBW50985.1    GGFJ01001843    MBW50984.1    GGMR01006408    MBY19027.1    GGMS01004444    MBY73647.1    GFTR01008256    JAW08170.1    GGFJ01001858    MBW50999.1    JRES01000644    KNC29657.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    NEVH01026154    PNF14491.1   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE
Interpro
IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
Gene 3D
PDB
6AR3     E-value=0.000219645,     Score=107

Ontologies

Topology

Length:
579
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
2.04437000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.06153
outside
1  -  579
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0.131416
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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