Gene

KWMTBOMO10532

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr17(-):13470175-13471611      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.162

CDS

ATGGAGCAAGCCGGGTTCAGACGGAATTTTTCAACAATAGACCACATCCATACACTCAAACAATTAATTGAGAAGTACAACGAATTCAACAAAACACTGTATGTGGCTTTTATAGATTATGCAAAGGCTTTTGATTGCATTAGTCATAAAGCAATGTGGGAAAGCCTAGGAAAGCAAGGTATACCAGAAACATATTTAGACATTATCAAAAATATATATGCAAACAGTAAAGCAAAAATCCAGTTAGAAACCCTGGGAAAAGAATTCCGAATCAAGCGAGGAGTCAGGCAGGGAGACCCAATGTCCCCAAAGTTGTTTTCAGCAGTGCTAGAGAACGTCTTTCGCAACCTTGACTGGGAACATCTAGGCCTCAACATAGACGGAAGGAAACTAAACCACTTAAGATTCGCGGACGATATAGTTCTGCTTGAAGAAAATCCAAAGGCACTCGAAAAGATGATCCAAGCTCTAAATACTGAAAGCTCCAAAGTGGGGTTAAAAATGAACATAACAAAAACGAAATTGATGACTAACTCAGAAATAAGGCCCATTGAAATTGATGGACAAAAAATAGAATATGTTGACGAATATTGCTACTTGGGTCAGATCATCTCCCCTAAAGACCAAACAACCAAGGAAATAAATAAGAGGATTGCTAATGGGTGGAAAAAATACTGGTCTCTTAAGGAAGTTGTAAAAGCTAAAGAACACAATATGGCAACGAAGAGGAAAGTATTCAATACTTGTATTCTCCCATGCATCACATACGGCTGCGAAACATGGTCCCTTACAAAACACCATAGAGAAAAACTGGGAAAGTGCCAGAGAGGTATGGAACGAAGCATGACAGGAACAAGAAGACAAGATAGAGTTAGCAATGTGCAATTAAGAGAAAAAACAAAACTAACTGACATCCTGGAAAAAATAGACCTCCAAAAATGGAGATGGACCGGCCATATGTTGAGATCTAGACAAGAAAAGTGGAGTCAAATTATAACGAACTGGTATCCAAGAGATGGCAAGAGGTGTCGAGGACGTCAACAAATGCGATGGGAAAATGAGCTGAAACTTACCGCCGGACCCAAATGGAGAAGAGTTGCTCAAGATAGAAAACAATGGAGACTACTGGAGGAGGCCTTTGCCAGAAGGCACACTGAGTTGAGAGACATCTTATAA

Protein

MEQAGFRRNFSTIDHIHTLKQLIEKYNEFNKTLYVAFIDYAKAFDCISHKAMWESLGKQGIPETYLDIIKNIYANSKAKIQLETLGKEFRIKRGVRQGDPMSPKLFSAVLENVFRNLDWEHLGLNIDGRKLNHLRFADDIVLLEENPKALEKMIQALNTESSKVGLKMNITKTKLMTNSEIRPIEIDGQKIEYVDEYCYLGQIISPKDQTTKEINKRIANGWKKYWSLKEVVKAKEHNMATKRKVFNTCILPCITYGCETWSLTKHHREKLGKCQRGMERSMTGTRRQDRVSNVQLREKTKLTDILEKIDLQKWRWTGHMLRSRQEKWSQIITNWYPRDGKRCRGRQQMRWENELKLTAGPKWRRVAQDRKQWRLLEEAFARRHTELRDIL

Uniprot

A0A2W1BCS2   D7F179   A0A2H1VY30   D7F176   A0A2W1BDX2   A0A2W1B5F8   + More
D7F178   D7F177   A0A023EXV2   A0A2W1BSQ8   A0A2W1BZV1   A0A2G8K4F2   A0A2H1WF27   A0A069DZM5   W4YXJ1   A0A2H1VS24   A0A3S2TAR4   A0A224XSN7   A0A1E1X2U1   D7F164   A4KWF2   A4KWG0   A0A0R3Q573   D7F157   D7F166   A0A2G8JFM9   A0A2G8KES6   A0A2W1BLC9   D7F159   A0A016UWI5   A0A016UTS3   A0A2W1BMB6   D7F165   D7F158   D7F160   A0A016S1D2   A0A016TIA8   W4YXJ0   A0A016WEQ1   A0A016S795   A0A016T7J7   A0A016WA79   A0A016VVN3   A0A016S5B2   A0A016V6V0   A0A016UMK7   A0A016RXU5   A0A3S2TRE0   A0A016RYK0   A0A016V7H3   A0A016VCD9   A0A016VEC1   A0A016VV56   A0A016VBP7   A0A016U784   A0A016S403   A0A016WZF0   W6NEE1   A0A016X056   A0A016T590   A0A023GMF8   A0A016VMK8   A0A016WMQ0   A0A3S2KX72   A0A016USZ5   A0A016TQ81   A0A016TH80   A0A016S6T9   A0A016VCU3   A0A016WCB8   A0A016VBB9   A0A016VGM4   A0A016UUF2   A0A016VN75   A0A016ULU9   A0A016VDZ6   A0A016VTY8   A0A0K0FAW8   A0A016SSP6   A0A016WPY4   A0A016U3R5   A0A016VPL5   A0A0R3QIP3   A0A016S4R3   A0A2H2JCJ4   A0A016VW83   A0A016UGM6   A0A016S7F6   A0A016S524   A0A016S527   A0A016TXK2   A0A016TX70   A0A016T4C4   A0A016UHW4   A0A016SGC3   A0A016URH5   A0A016SX67   A0A016US53  

Pubmed

28756777    20470440    25474469    29023486    26334808    28503490    + More
17360547    25730766   

EMBL

KZ150485    PZC70710.1    FJ265564    ADI61832.1    ODYU01004982    SOQ45402.1    + More
FJ265561    ADI61829.1    KZ150108    PZC73382.1    KZ150317    PZC71439.1    FJ265563    ADI61831.1    FJ265562    ADI61830.1    GBBI01004876    JAC13836.1    KZ149912    PZC78089.1    KZ149907    PZC78256.1    MRZV01000899    PIK42833.1    ODYU01008249    SOQ51673.1    GBGD01000380    JAC88509.1    AAGJ04144474    ODYU01004088    SOQ43598.1    RSAL01002362    RVE40503.1    GFTR01005437    JAW10989.1    GFAC01005640    JAT93548.1    FJ265549    ADI61817.1    EF113398    EF113401    ABO45231.1    EF113402    ABO45239.1    UZAG01000503    VDO08661.1    FJ265542    ADI61810.1    FJ265551    ADI61819.1    MRZV01002136    PIK34564.1    MRZV01000640    PIK46507.1    KZ149985    PZC75698.1    FJ265544    ADI61812.1    JARK01001362    EYC18843.1    EYC18844.1    KZ150072    PZC74016.1    FJ265550    ADI61818.1    FJ265543    ADI61811.1    FJ265545    ADI61813.1    JARK01001655    EYB84321.1    JARK01001434    EYC02684.1    AAGJ04050748    JARK01000347    EYC38051.1    JARK01001621    EYB86109.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01000460    EYC36749.1    JARK01001340    EYC30828.1    JARK01001626    EYB85833.1    JARK01001351    EYC23394.1    JARK01001370    EYC16151.1    JARK01001677    EYB83168.1    RSAL01000016    RVE53061.1    EYB83167.1    EYC23395.1    JARK01001348    EYC25050.1    EYC25048.1    EYC31295.1    EYC25049.1    JARK01001389    EYC11015.1    JARK01001639    EYB85201.1    JARK01000055    EYC44622.1    CAVP010058300    CDL94394.1    EYC44623.1    JARK01001473    EYB97806.1    GBBM01001358    JAC34060.1    JARK01001343    EYC28635.1    JARK01000189    EYC40935.1    RSAL01002130    RVE40575.1    JARK01001364    EYC18031.1    JARK01001423    EYC04578.1    JARK01001438    EYC02012.1    JARK01001615    EYB86390.1    EYC25046.1    JARK01000388    EYC37469.1    JARK01001349    EYC24735.1    JARK01001346    EYC26784.1    JARK01001361    EYC19034.1    JARK01001344    EYC28218.1    EYC16150.1    EYC25257.1    JARK01001341    EYC30223.1    JARK01001517    EYB93530.1    JARK01000173    EYC41342.1    JARK01001396    EYC09581.1    JARK01001342    EYC29360.1    UZAG01005986    VDO18177.1    JARK01001636    EYB85342.1    EYC31302.1    JARK01001378    EYC13977.1    JARK01001612    EYB86585.1    EYB85344.1    JARK01001632    EYB85541.1    JARK01001406    EYC07496.1    JARK01001407    EYC07212.1    JARK01001475    EYB97550.1    JARK01001376    EYC14422.1    JARK01001568    EYB89432.1    JARK01001365    EYC18009.1    JARK01001500    EYB95040.1    EYC28825.1    EYC18010.1   

Proteomes

UP000230750    UP000007110    UP000283053    UP000050602    UP000024635    UP000025227    + More
UP000035680    UP000005237   

PRIDE

D7F179    D7F176    D7F178    D7F177    D7F164    D7F157    + More
D7F166    D7F159    D7F165    D7F158    D7F160   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF13855   LRR_8
PF01826   TIL

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR032675   LRR_dom_sf       
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR029052   Metallo-depent_PP-like       
IPR036084   Ser_inhib-like_sf       
IPR002919   TIL_dom       
IPR017452   GPCR_Rhodpsn_7TM       

SUPFAM

SSF56219   SSF56219        + More
SSF57567   SSF57567       

Gene 3D

3.60.10.10     3.80.10.10     3.60.21.10    

ProteinModelPortal

A0A2W1BCS2   D7F179   A0A2H1VY30   D7F176   A0A2W1BDX2   A0A2W1B5F8   + More
D7F178   D7F177   A0A023EXV2   A0A2W1BSQ8   A0A2W1BZV1   A0A2G8K4F2   A0A2H1WF27   A0A069DZM5   W4YXJ1   A0A2H1VS24   A0A3S2TAR4   A0A224XSN7   A0A1E1X2U1   D7F164   A4KWF2   A4KWG0   A0A0R3Q573   D7F157   D7F166   A0A2G8JFM9   A0A2G8KES6   A0A2W1BLC9   D7F159   A0A016UWI5   A0A016UTS3   A0A2W1BMB6   D7F165   D7F158   D7F160   A0A016S1D2   A0A016TIA8   W4YXJ0   A0A016WEQ1   A0A016S795   A0A016T7J7   A0A016WA79   A0A016VVN3   A0A016S5B2   A0A016V6V0   A0A016UMK7   A0A016RXU5   A0A3S2TRE0   A0A016RYK0   A0A016V7H3   A0A016VCD9   A0A016VEC1   A0A016VV56   A0A016VBP7   A0A016U784   A0A016S403   A0A016WZF0   W6NEE1   A0A016X056   A0A016T590   A0A023GMF8   A0A016VMK8   A0A016WMQ0   A0A3S2KX72   A0A016USZ5   A0A016TQ81   A0A016TH80   A0A016S6T9   A0A016VCU3   A0A016WCB8   A0A016VBB9   A0A016VGM4   A0A016UUF2   A0A016VN75   A0A016ULU9   A0A016VDZ6   A0A016VTY8   A0A0K0FAW8   A0A016SSP6   A0A016WPY4   A0A016U3R5   A0A016VPL5   A0A0R3QIP3   A0A016S4R3   A0A2H2JCJ4   A0A016VW83   A0A016UGM6   A0A016S7F6   A0A016S524   A0A016S527   A0A016TXK2   A0A016TX70   A0A016T4C4   A0A016UHW4   A0A016SGC3   A0A016URH5   A0A016SX67   A0A016US53  

PDB

5HHL     E-value=0.00428567,     Score=95

KEGG

105842941    no KO assigned | (RefSeq) uncharacterized LOC105842941

GO

GO:0003964   GO:0004519   GO:0016021  

Length:

391

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03157

Exp number, first 60 AAs:

0.00098

Total prob of N-in:

0.01261

outside

1  -  391

 

 

Pi

202.303266

Theta

79.224299

Tajima's D

3.994998

CLR

52.247865

CSRT

0.998950052497375

Interpretation

Uncertain