SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10532
Annotation
endonuclease-reverse_transcriptase_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.162
 

Sequence

CDS
ATGGAGCAAGCCGGGTTCAGACGGAATTTTTCAACAATAGACCACATCCATACACTCAAACAATTAATTGAGAAGTACAACGAATTCAACAAAACACTGTATGTGGCTTTTATAGATTATGCAAAGGCTTTTGATTGCATTAGTCATAAAGCAATGTGGGAAAGCCTAGGAAAGCAAGGTATACCAGAAACATATTTAGACATTATCAAAAATATATATGCAAACAGTAAAGCAAAAATCCAGTTAGAAACCCTGGGAAAAGAATTCCGAATCAAGCGAGGAGTCAGGCAGGGAGACCCAATGTCCCCAAAGTTGTTTTCAGCAGTGCTAGAGAACGTCTTTCGCAACCTTGACTGGGAACATCTAGGCCTCAACATAGACGGAAGGAAACTAAACCACTTAAGATTCGCGGACGATATAGTTCTGCTTGAAGAAAATCCAAAGGCACTCGAAAAGATGATCCAAGCTCTAAATACTGAAAGCTCCAAAGTGGGGTTAAAAATGAACATAACAAAAACGAAATTGATGACTAACTCAGAAATAAGGCCCATTGAAATTGATGGACAAAAAATAGAATATGTTGACGAATATTGCTACTTGGGTCAGATCATCTCCCCTAAAGACCAAACAACCAAGGAAATAAATAAGAGGATTGCTAATGGGTGGAAAAAATACTGGTCTCTTAAGGAAGTTGTAAAAGCTAAAGAACACAATATGGCAACGAAGAGGAAAGTATTCAATACTTGTATTCTCCCATGCATCACATACGGCTGCGAAACATGGTCCCTTACAAAACACCATAGAGAAAAACTGGGAAAGTGCCAGAGAGGTATGGAACGAAGCATGACAGGAACAAGAAGACAAGATAGAGTTAGCAATGTGCAATTAAGAGAAAAAACAAAACTAACTGACATCCTGGAAAAAATAGACCTCCAAAAATGGAGATGGACCGGCCATATGTTGAGATCTAGACAAGAAAAGTGGAGTCAAATTATAACGAACTGGTATCCAAGAGATGGCAAGAGGTGTCGAGGACGTCAACAAATGCGATGGGAAAATGAGCTGAAACTTACCGCCGGACCCAAATGGAGAAGAGTTGCTCAAGATAGAAAACAATGGAGACTACTGGAGGAGGCCTTTGCCAGAAGGCACACTGAGTTGAGAGACATCTTATAA
Protein
MEQAGFRRNFSTIDHIHTLKQLIEKYNEFNKTLYVAFIDYAKAFDCISHKAMWESLGKQGIPETYLDIIKNIYANSKAKIQLETLGKEFRIKRGVRQGDPMSPKLFSAVLENVFRNLDWEHLGLNIDGRKLNHLRFADDIVLLEENPKALEKMIQALNTESSKVGLKMNITKTKLMTNSEIRPIEIDGQKIEYVDEYCYLGQIISPKDQTTKEINKRIANGWKKYWSLKEVVKAKEHNMATKRKVFNTCILPCITYGCETWSLTKHHREKLGKCQRGMERSMTGTRRQDRVSNVQLREKTKLTDILEKIDLQKWRWTGHMLRSRQEKWSQIITNWYPRDGKRCRGRQQMRWENELKLTAGPKWRRVAQDRKQWRLLEEAFARRHTELRDIL

Summary

EMBL
KZ150485    PZC70710.1    FJ265564    ADI61832.1    ODYU01004982    SOQ45402.1    + More
FJ265561    ADI61829.1    KZ150108    PZC73382.1    KZ150317    PZC71439.1    FJ265563    ADI61831.1    FJ265562    ADI61830.1    GBBI01004876    JAC13836.1    KZ149912    PZC78089.1    KZ149907    PZC78256.1    MRZV01000899    PIK42833.1    ODYU01008249    SOQ51673.1    GBGD01000380    JAC88509.1    AAGJ04144474    ODYU01004088    SOQ43598.1    RSAL01002362    RVE40503.1    GFTR01005437    JAW10989.1    GFAC01005640    JAT93548.1    FJ265549    ADI61817.1    EF113398    EF113401    ABO45231.1    EF113402    ABO45239.1    UZAG01000503    VDO08661.1    FJ265542    ADI61810.1    FJ265551    ADI61819.1    MRZV01002136    PIK34564.1    MRZV01000640    PIK46507.1    KZ149985    PZC75698.1    FJ265544    ADI61812.1    JARK01001362    EYC18843.1    EYC18844.1    KZ150072    PZC74016.1    FJ265550    ADI61818.1    FJ265543    ADI61811.1    FJ265545    ADI61813.1    JARK01001655    EYB84321.1    JARK01001434    EYC02684.1    AAGJ04050748    JARK01000347    EYC38051.1    JARK01001621    EYB86109.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01000460    EYC36749.1    JARK01001340    EYC30828.1    JARK01001626    EYB85833.1    JARK01001351    EYC23394.1    JARK01001370    EYC16151.1    JARK01001677    EYB83168.1    RSAL01000016    RVE53061.1    EYB83167.1    EYC23395.1    JARK01001348    EYC25050.1    EYC25048.1    EYC31295.1    EYC25049.1    JARK01001389    EYC11015.1    JARK01001639    EYB85201.1    JARK01000055    EYC44622.1    CAVP010058300    CDL94394.1    EYC44623.1    JARK01001473    EYB97806.1    GBBM01001358    JAC34060.1    JARK01001343    EYC28635.1    JARK01000189    EYC40935.1    RSAL01002130    RVE40575.1    JARK01001364    EYC18031.1    JARK01001423    EYC04578.1    JARK01001438    EYC02012.1    JARK01001615    EYB86390.1    EYC25046.1    JARK01000388    EYC37469.1    JARK01001349    EYC24735.1    JARK01001346    EYC26784.1    JARK01001361    EYC19034.1    JARK01001344    EYC28218.1    EYC16150.1    EYC25257.1    JARK01001341    EYC30223.1    JARK01001517    EYB93530.1    JARK01000173    EYC41342.1    JARK01001396    EYC09581.1    JARK01001342    EYC29360.1    UZAG01005986    VDO18177.1    JARK01001636    EYB85342.1    EYC31302.1    JARK01001378    EYC13977.1    JARK01001612    EYB86585.1    EYB85344.1    JARK01001632    EYB85541.1    JARK01001406    EYC07496.1    JARK01001407    EYC07212.1    JARK01001475    EYB97550.1    JARK01001376    EYC14422.1    JARK01001568    EYB89432.1    JARK01001365    EYC18009.1    JARK01001500    EYB95040.1    EYC28825.1    EYC18010.1   
Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF13855   LRR_8
PF01826   TIL
Interpro
IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR032675   LRR_dom_sf       
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR029052   Metallo-depent_PP-like       
IPR036084   Ser_inhib-like_sf       
IPR002919   TIL_dom       
IPR017452   GPCR_Rhodpsn_7TM       
SUPFAM
SSF56219   SSF56219        + More
SSF57567   SSF57567       
Gene 3D
PDB
5HHL     E-value=0.00428567,     Score=95

Ontologies

Topology

Length:
391
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.03157
Exp number, first 60 AAs:
0.00098
Total prob of N-in:
0.01261
outside
1  -  391
 
 

Population Genetic Test Statistics

Pi
202.303266
Theta
79.224299
Tajima's D
3.994998
CLR
52.247865
CSRT
0.998950052497375
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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