Gene

KWMTBOMO10531

Pre Gene Modal

BGIBMGA007133

Annotation

PREDICTED:_TATA-binding_protein-associated_factor_172_[Bombyx_mori]

Location

Bomo_Chr17(+):13430617-13439761      View in EpiBrowser

Full name

TATA-binding protein-associated factor 172       + More
Poly [ADP-ribose] polymerase      

Alternative Name

ATP-dependent helicase BTAF1
B-TFIID transcription factor-associated 170 kDa subunit
TAF(II)170
TBP-associated factor 172

Location in the cell

Mitochondrial   Reliability : 1.14

CDS

ATGTCACTGGTGCCGGCGCTGGGCGAGGCGGGCGGGGCGCGCGTGCGGTGCGGCGCGGCGGAGGCGCTGGCGCGGCTGGTGGACGCCCTGCAGCTGCAGCTCGTGCCCTACATCGTGCTGCTCGTCATCCCGCTGCTCGGTCGTATGAGCGACCACAGCGAGGCCGTCCGCATGATGTCGACCCGTTGCTTCGCGACCCTGATCCAGCTGATGCCGCTAGAGGGCGCCGTGCCCGAGCCGCCCGACCTGGCCCCCGCGCTGCGCGACCGCATACGTCACGACAAGAACTTTCTGGAACAACTCTTCAACCCCAAATCGATCAAGGACTATAAAATCCCCGTGCCGCTCTCCGCCGAGTTACGCTCCTATCAACAGGCGGGCGTGAACTGGCTGCGGTTCCTGTACGAGTACAAGTTGCACGGCGTGCTGTGCGACGACATGGGGCTGGGCAAGACGCTGCAGTCCATAGCCGTGGTGGCGGGCTCGCACTGGGAGGGCGCCGCCGCGCGGGCGCACGCGCTGCCCTCGCTCGTCGTCTGCCCCCCCACACTCACAGGTCACTGGGTGTTCGAAGTAAACAAGTTCATACCTTCGAAGATCCTCAGGCCGCTGCAGTACGTGGGGCCGCCGGCTGAACGGGAGAAGCTTCGGCATCAAGTGAAGTACCACAACTTCATCGTCGCCTCGTACGACATCGTCAGGAAGGACATAGACTTCTTCAGCAGCATCAGGTGGAACTACTGCGTTCTGGACGAGGGACACGTTATCAAAAATGACAAGACGAAGGCTTTCAAAGCCATTAAAATGCTGATAGCCAACCATAGGTTGATACTATCCGGAACACCTATTCAGAACAACGTGCTGGAGCTGTGGTCGCTGTTCGACTTCTTGATGCCGGGCCTGCTGGGCACCTCGCGCGAGTTCACGGCGCGCTACTCGCGGCCCATCCTCGCCGCCCGCGACCCCCGCGCCTCCCCGCTGCAGCTGCAGGCCGGCGCGCTCGCCTGCGAGGCGCTGCACAGGCAGGTGCTACCGTTCCTGTTGAGGCGTGTTAAAGAAGATGTACTGAAGGAGCTTCCACCGAAGATAACGCAGGACTATTACTGCGAGCTCAGCCCCCTACAGCGATGCCTGTACGAGGACTTCTCGAGAGACCACGTGCCGCAGGACATCACTAGCACTAGTCACACACACGTATTTCAGGCTCTACATTACCTCCAAAACGTCTGCAACCACCCGAAGCTGGTGTTGACTCCGGACCATCCCGAGGCACAAACCATCGCCAAACAATTGAGAGCGCAAAATTCTAATCTCGACGACATTGAACATTCCGCTAAACTGCCTGCTTTAAAACAACTGCTCCTCGACTGCGGGATCGGCGCGACGGGGGCGGAGGCCGAGTCCTCGCCGGTCGTGTCGCAACACCGAGCGCTCGTATTCTGTCAACTGAAGAAAATGTTGGACATCGTCGAGAGAGATCTGCTGCTACAGCATCTGCCCTCCGTGACGTACCTGCGGCTCGACGGCTCGGTCCCGCCCCAGCACAGGCACGCCATCGTCACGCGCTTCAACACCGACGTCTCCATTGACTTGTTACTCCTCACGACCGCGGTGGGAGGCCTGGGGCTGAATTTAACCGGCGCGGACACTGTGATTTTCGTGGAACACGACTGGAACCCCATGAAGGACCTGCAGGCCATGGACCGAGCTCATCGGATCGGACAAAAGAAAGTTGTTAATGTCTACAGACTCATCACCAGGAATACACTCGAAGAGAAGATAATGGGGCTACAAAAATTTAAATTGATGACAGCGAACACGGTTATAAGCAGCGAGAACGCGGCCATAGAGACGATGGGCACGGACCAGCTGCTTGACCTGTTCACTCTCAAGCCCGGCCGCTCGCACGACCAGCCCGCCGCCTCCAGGTCCGTGCTGGAGGCGCTGCCCGACCTCTGGGACGACAAACAGTACGAAGAGGAATATGACATGACTAACTTCATCAAGGGATTGAACAAAATGAACGCGCACTAA

Protein

MSLVPALGEAGGARVRCGAAEALARLVDALQLQLVPYIVLLVIPLLGRMSDHSEAVRMMSTRCFATLIQLMPLEGAVPEPPDLAPALRDRIRHDKNFLEQLFNPKSIKDYKIPVPLSAELRSYQQAGVNWLRFLYEYKLHGVLCDDMGLGKTLQSIAVVAGSHWEGAAARAHALPSLVVCPPTLTGHWVFEVNKFIPSKILRPLQYVGPPAEREKLRHQVKYHNFIVASYDIVRKDIDFFSSIRWNYCVLDEGHVIKNDKTKAFKAIKMLIANHRLILSGTPIQNNVLELWSLFDFLMPGLLGTSREFTARYSRPILAARDPRASPLQLQAGALACEALHRQVLPFLLRRVKEDVLKELPPKITQDYYCELSPLQRCLYEDFSRDHVPQDITSTSHTHVFQALHYLQNVCNHPKLVLTPDHPEAQTIAKQLRAQNSNLDDIEHSAKLPALKQLLLDCGIGATGAEAESSPVVSQHRALVFCQLKKMLDIVERDLLLQHLPSVTYLRLDGSVPPQHRHAIVTRFNTDVSIDLLLLTTAVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNTLEEKIMGLQKFKLMTANTVISSENAAIETMGTDQLLDLFTLKPGRSHDQPAASRSVLEALPDLWDDKQYEEEYDMTNFIKGLNKMNAH

Subunit

Associates with TBP to form B-TFIID. Binds DRAP1.

Similarity

Belongs to the SNF2/RAD54 helicase family.

Keywords

Alternative splicing   ATP-binding   Complete proteome   Direct protein sequencing   DNA-binding   Helicase   Hydrolase   Nucleotide-binding   Nucleus   Phosphoprotein   Reference proteome   Repeat  

Feature

chain  TATA-binding protein-associated factor 172
splice variant  In isoform 2.

Uniprot

H9JC88   A0A2A4JRU2   A0A194PII4   A0A212ERX3   A0A0N0PCB8   A0A067QSZ1   + More
A0A1B6C462   A0A1B6DFE2   A0A2J7RIR5   A0A1Q3FBY8   A0A1Q3FES8   B0W966   A0A182GQN5   A0A182G5L0   A0A336KBP6   Q16JW5   D6WW10   A0A023F3Q0   A0A0A9X8J8   A0A224X9F8   E0VSS7   A0A1W4XGH1   A0A1J1HY29   A0A182JX29   A0A1B6CL15   A0A182IRV5   A0A182RP11   W4VRR5   A0A182XVA4   A0A2R7WMI8   A0A182HGR5   Q7PUQ9   A0A084VRP0   A0A1D2NHA0   A0A182P5N4   A0A1Y1K030   A0A0A1WE77   U4U265   N6T163   A0A182UMS2   A0A1S3HG25   A0A0K8V4N8   A0A034VBP8   A0A2K5NYE6   A0A1S3HME5   W8BMY6   A0A2R9CL81   H2Q297   A0A2J8Y586   G3S6X7   G3QWB8   A0A2R9CL47   K7CDG3   A0A0A0MTH9   Q2M1V9   O14981   A0A2K6CJ01   K7EVC3   A0A1L8DH30   A0A0G2K1N4   A0A2K6CJ03   G7PDJ8   A0A2K5VRB0   A0A096P5I6   M3Z0K8   A0A2K5IAT2   H9G1J4   A0A1L8DFY6   A0A0P6JHM9   A0A2K6CJ37   A0A2K6K815   A0A2K5VR83   A0A2K6ACZ1   A0A0D9R2N4   A0A2K5NZ06   A0A2K5NYM6   A0A2K5IAD5   A0A1D5Q9F4   A0ZVB6   E9QAE3   F1LW16   E2QWL4   A0A2K6T5A3   A0A2K6K7Z2   G3TLC7   U6DCU6   A0A2K5EAH3   A0A2K6NLM4   A0A2K6NLL1   A0A2K5IAN3   F7H9R4   A0A2K6T5E5   A0A2R8MUK8   A0A087SYZ8   A0A1S3GNE9   A0A091DCR0   A0A2Y9RVR9   A0A2K5QTX5   A0A2K5EAI7   A0A2K6NLI4  

EC Number

3.6.4.-
2.4.2.-

Pubmed

19121390    26354079    22118469    24845553    26483478    17510324    + More
18362917    19820115    25474469    25401762    20566863    25244985    12364791    14747013    17210077    24438588    27289101    28004739    25830018    23537049    25348373    24495485    22722832    16136131    22398555    15164054    21269460    23186163    11181995    15489334    9342322    9488487    14702039    10642510    15509807    15057822    16641100    22002653    17431167    25319552    19468303    21183079    16341006    25362486    25243066   

EMBL

BABH01015068    BABH01015069    BABH01015070    BABH01015071    BABH01015072    BABH01015073    + More
BABH01015074    NWSH01000689    PCG74757.1    KQ459603    KPI93127.1    AGBW02012899    OWR44242.1    KQ460711    KPJ12691.1    KK852980    KDR13008.1    GEDC01029006    JAS08292.1    GEDC01012899    JAS24399.1    NEVH01003493    PNF40724.1    GFDL01010023    JAV25022.1    GFDL01008997    JAV26048.1    DS231862    EDS39763.1    JXUM01080903    KQ563215    KXJ74274.1    JXUM01043776    JXUM01043777    JXUM01043778    UFQS01000046    UFQT01000046    SSW98500.1    SSX18886.1    CH477989    EAT34577.1    KQ971361    EFA08205.1    GBBI01003193    JAC15519.1    GBHO01026557    GBRD01014888    JAG17047.1    JAG50938.1    GFTR01008892    JAW07534.1    DS235756    EEB16433.1    CVRI01000036    CRK93000.1    GEDC01023186    GEDC01014621    JAS14112.1    JAS22677.1    GANO01000305    JAB59566.1    KK855100    PTY20838.1    APCN01005942    AAAB01008987    EAA01172.6    ATLV01015761    KE525036    KFB40634.1    LJIJ01000039    ODN04641.1    GEZM01096473    JAV54874.1    GBXI01017008    GBXI01015292    JAC97283.1    JAC98999.1    KB631617    ERL84706.1    APGK01057067    KB741277    ENN71273.1    GDHF01018412    JAI33902.1    GAKP01018256    JAC40696.1    GAMC01011820    GAMC01011819    JAB94736.1    AJFE02089207    AJFE02089208    AJFE02089209    AJFE02089210    AJFE02089211    AACZ04051054    ABGA01142724    ABGA01142725    ABGA01142726    NDHI03003280    PNJ89429.1    PNJ89430.1    CABD030075315    CABD030075316    CABD030075317    CABD030075318    CABD030075319    CABD030075320    CABD030075321    CABD030075322    CABD030075323    GABC01000314    GABF01005178    GABD01003440    GABE01005049    NBAG03000216    JAA11024.1    JAA16967.1    JAA29660.1    JAA39690.1    PNI82330.1    PNI82331.1    AL359198    AL365398    BC112201    CH471066    AAI12202.1    EAW50102.1    AJ001017    AF038362    AK303554    AF166118    GFDF01008322    JAV05762.1    AC094246    CM001284    EHH64880.1    AQIA01071978    AQIA01071979    AQIA01071980    AHZZ02035770    AHZZ02035771    AEYP01026426    AEYP01026427    AEYP01026428    AEYP01026429    AEYP01026430    AEYP01026431    AEYP01026432    AEYP01026433    AEYP01026434    AEYP01026435    JSUE03043975    JSUE03043976    JU337000    JU477728    AFE80753.1    AFH34532.1    GFDF01008716    JAV05368.1    GEBF01003065    JAO00568.1    AQIB01042875    AB287295    BAF41982.1    AC118931    AAEX03015408    HAAF01008597    CCP80421.1    GAMR01006006    GAMP01000263    JAB27926.1    JAB52492.1    KK112605    KFM58087.1    KN122536    KFO29934.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000027135    + More
UP000235965    UP000002320    UP000069940    UP000249989    UP000008820    UP000007266    UP000009046    UP000192223    UP000183832    UP000075881    UP000075880    UP000075900    UP000076408    UP000075840    UP000007062    UP000030765    UP000094527    UP000075885    UP000030742    UP000019118    UP000075903    UP000085678    UP000233060    UP000240080    UP000002277    UP000001595    UP000001519    UP000005640    UP000233120    UP000002494    UP000009130    UP000233100    UP000028761    UP000000715    UP000233080    UP000006718    UP000233180    UP000233140    UP000029965    UP000000589    UP000002254    UP000233220    UP000007646    UP000233020    UP000233200    UP000008225    UP000054359    UP000081671    UP000028990    UP000248480    UP000233040   

PRIDE

H9JC88    O14981    E9QAE3    F1LW16   

Pfam

PF00271   Helicase_C        + More
PF00176   SNF2_N
PF12054   DUF3535
PF12796   Ank_2
PF00644   PARP
PF02174   IRS
PF07647   SAM_2
PF00023   Ank

Interpro

IPR014001   Helicase_ATP-bd        + More
IPR001650   Helicase_C       
IPR016024   ARM-type_fold       
IPR022707   DUF3535       
IPR000330   SNF2_N       
IPR027417   P-loop_NTPase       
IPR038718   SNF2-like_sf       
IPR011989   ARM-like       
IPR001660   SAM       
IPR012317   Poly(ADP-ribose)pol_cat_dom       
IPR013761   SAM/pointed_sf       
IPR002110   Ankyrin_rpt       
IPR020683   Ankyrin_rpt-contain_dom       
IPR036770   Ankyrin_rpt-contain_sf       
IPR038742   FRS2_PTB       
IPR002404   IRS_PTB       

SUPFAM

SSF48371   SSF48371        + More
SSF52540   SSF52540       
SSF47769   SSF47769       
SSF48403   SSF48403       

Gene 3D

3.40.50.10810     1.25.10.10     1.10.150.50     1.25.40.20    

CDD

cd00079  HELICc
cd01202  PTB_FRS2
cd00204  ANK

ProteinModelPortal

H9JC88   A0A2A4JRU2   A0A194PII4   A0A212ERX3   A0A0N0PCB8   A0A067QSZ1   + More
A0A1B6C462   A0A1B6DFE2   A0A2J7RIR5   A0A1Q3FBY8   A0A1Q3FES8   B0W966   A0A182GQN5   A0A182G5L0   A0A336KBP6   Q16JW5   D6WW10   A0A023F3Q0   A0A0A9X8J8   A0A224X9F8   E0VSS7   A0A1W4XGH1   A0A1J1HY29   A0A182JX29   A0A1B6CL15   A0A182IRV5   A0A182RP11   W4VRR5   A0A182XVA4   A0A2R7WMI8   A0A182HGR5   Q7PUQ9   A0A084VRP0   A0A1D2NHA0   A0A182P5N4   A0A1Y1K030   A0A0A1WE77   U4U265   N6T163   A0A182UMS2   A0A1S3HG25   A0A0K8V4N8   A0A034VBP8   A0A2K5NYE6   A0A1S3HME5   W8BMY6   A0A2R9CL81   H2Q297   A0A2J8Y586   G3S6X7   G3QWB8   A0A2R9CL47   K7CDG3   A0A0A0MTH9   Q2M1V9   O14981   A0A2K6CJ01   K7EVC3   A0A1L8DH30   A0A0G2K1N4   A0A2K6CJ03   G7PDJ8   A0A2K5VRB0   A0A096P5I6   M3Z0K8   A0A2K5IAT2   H9G1J4   A0A1L8DFY6   A0A0P6JHM9   A0A2K6CJ37   A0A2K6K815   A0A2K5VR83   A0A2K6ACZ1   A0A0D9R2N4   A0A2K5NZ06   A0A2K5NYM6   A0A2K5IAD5   A0A1D5Q9F4   A0ZVB6   E9QAE3   F1LW16   E2QWL4   A0A2K6T5A3   A0A2K6K7Z2   G3TLC7   U6DCU6   A0A2K5EAH3   A0A2K6NLM4   A0A2K6NLL1   A0A2K5IAN3   F7H9R4   A0A2K6T5E5   A0A2R8MUK8   A0A087SYZ8   A0A1S3GNE9   A0A091DCR0   A0A2Y9RVR9   A0A2K5QTX5   A0A2K5EAI7   A0A2K6NLI4  

PDB

6G7E     E-value=0,     Score=1667

KEGG

101746640    K15192 TATA-binding protein-associated factor [EC:3.6.4.-] | (RefSeq) TATA-binding protein-associate

GO

GO:0005524   GO:0004386   GO:0016740   GO:0003677   GO:0008094   GO:0005634   GO:0005654   GO:0035562   GO:0043231   GO:0045892   GO:0003700   GO:0003950   GO:0005488   GO:0051539   GO:0006284   GO:0003906   GO:0006285   GO:0019104   GO:0003824  

Subcellular location

Nucleus  

Length:

677

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.893429999999999

Exp number, first 60 AAs:

0.42074

Total prob of N-in:

0.01364

outside

1  -  677

 

 

Pi

231.498737

Theta

168.726521

Tajima's D

1.019208

CLR

0.126887

CSRT

0.667666616669166

Interpretation

Uncertain