Gene

KWMTBOMO10530

Pre Gene Modal

BGIBMGA007133

Annotation

PREDICTED:_TATA-binding_protein-associated_factor_172_[Bombyx_mori]

Location

Bomo_Chr17(+):13426467-13430344      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.638 Nuclear   Reliability : 1.638

CDS

ATGGAGAGCATTAAGAAGGAATGGTGTGAGGAACTTCAGGCGAATTCGGCGAAAACACTGGCGACGCTTTTGGCGCAGCTCGCAGACCGGGACCCCTGCCCTAATAATAAAGTGCTGATTAATTTGAAGGCCTTTCTCAGATGCGACCCGGAGGTGACGCCGCGTGTGTCCTTGGAGCGCGTAGAGGAGGGCGGCGAGGACGGCAGCGGGGACTCCGCCGGGGAGGGACGCCACACGCGCCCTCTCGGACCGCACTTGGACAAGTACAACGGCATCCTGACGCTGCGGGAGCTCCAGCGCAGCGCCGACCGCGCCGCCCCCCGCCGCGGCCGCCCCCCCGCCGCCGCGCACCTCGACCTGGACTCGCTGCTCGACAACGAGGACGAGGCTAGAAAGCTACTTAGAATACAAAGACGAGGCGCGACATTGGCGCTCGTCAGCCTGACGGAACACTTTGGAGACTCACTGCCGCAGAAACTACCCAAGCTGTGGGAGTTTATCACACAACCTTTCGAAAGGGTCCTGACTGACGCCGAATTGGAGAGCATGGACGTGGAGGGTGCCGAGGAGCTGATCTCCCGGCTGCAGGTGTTCGAGGCGGTGTGCGGGCGCGCGGGGGGCGGCGTGCGGGCGGCGCGCGCGGCCGCCGTGTGCTGCGGGTACACGCGCGCGCCCTACACCGCGCTGCGGCACATGGCGGCGCGCGCACTCGCCGCGCTCGCACGCACCGCGCACCCGCACGTCATGCACGCCATCATCGATCAGGTATATTGTAAATGCGTTGTGTAA

Protein

MESIKKEWCEELQANSAKTLATLLAQLADRDPCPNNKVLINLKAFLRCDPEVTPRVSLERVEEGGEDGSGDSAGEGRHTRPLGPHLDKYNGILTLRELQRSADRAAPRRGRPPAAAHLDLDSLLDNEDEARKLLRIQRRGATLALVSLTEHFGDSLPQKLPKLWEFITQPFERVLTDAELESMDVEGAEELISRLQVFEAVCGRAGGGVRAARAAAVCCGYTRAPYTALRHMAARALAALARTAHPHVMHAIIDQVYCKCVV

Uniprot

H9JC88   A0A0N0PC13   A0A194PII4   A0A2H1VKQ2   A0A212ERX3   A0A2A4JRU2   + More
A0A3S2LVQ6   D6WW10   A0A1B6GNR9   V5I965   V5GXE7   A0A1B6MAC8   A0A1Y1K022   A0A1Y1K030   A0A067QSZ1   A0A1W4XGH1   A0A2P8XQ60   N6T163   A0A0A9X8J8   W4VRR5   A0A2B4S2D2   A7SE43   A0A224X9F8   T1HUJ9   T1KBT3   A0A1L8DFY6   A0A1L8DH30   A0A023F3Q0   A0A210PRC8   A0A0P5HFR8   A0A0P5IPU3   A0A0P5R2C6   A0A0P6DVL8   A0A0P5R210   A0A0P5HG23   A0A0P5NY89   A0A0P5MJ26   A0A1W7R9G5   A0A0P6DLX6   A0A0P5LHN4   A0A0P5HDC5   A0A0P5QA39   A0A0N8B6D5   A0A0N8BKL4   A0A0P5H150   A0A0P5KLR5   A0A0P5GV70   A0A0P5NH32   A0A0P5LIR3   A0A0P6GN52   A0A0P6EA79   A0A0P5MI20   A0A0N8BMP5   A0A0P5I7V9   A0A0P5GFX7   A0A0P6ELP2   A0A0P5H8L7   A0A0P5QKT2   A0A0P5IVR8   A0A0P5MKA5   A0A0P5GFY6   A0A0P6EEM9   A0A0P6DFS0   E9G250   E2BIA7   A0A250Y891   A0A232EK91   K7JA91   A0A1B6CL15   A0A2Y9RVR9   A0A1S3HG25   A0A1B6DFE2   A0A2Y9D8P3   A0A1S3HME5   G3TLC7   A0A146X650   Q52KH4   A0A384AK17   A0A384AJP4   A0A1B6C462   A0A146P1Z5   A0A3Q0E7G7   A0A1U7TK09   F7DH73   A0A1S2ZBK1   A0A3B4FAW4   K9IQH6   A0A3P4MW44   A0A147AB07   A0A2Y9SMQ4   A0A340YD53   A0A3R7M072   A0A2Y9SKZ0   A0A146X6M8   F1N507   I3MC54   A0A2Y9J2Z5   I3LTQ1   U6DCU6  

Pubmed

19121390    26354079    22118469    18362917    19820115    28004739    + More
24845553    29403074    23537049    25401762    17615350    25474469    28812685    21292972    20798317    28087693    28648823    20075255    15489334    17495919    19393038    30723633   

EMBL

BABH01015068    BABH01015069    BABH01015070    BABH01015071    BABH01015072    BABH01015073    + More
BABH01015074    KQ460711    KPJ12690.1    KQ459603    KPI93127.1    ODYU01003086    SOQ41398.1    AGBW02012899    OWR44242.1    NWSH01000689    PCG74757.1    RSAL01000162    RVE45378.1    KQ971361    EFA08205.1    GECZ01005708    JAS64061.1    GALX01003475    JAB64991.1    GALX01003473    JAB64993.1    GEBQ01007095    JAT32882.1    GEZM01096474    JAV54872.1    GEZM01096473    JAV54874.1    KK852980    KDR13008.1    PYGN01001559    PSN34064.1    APGK01057067    KB741277    ENN71273.1    GBHO01026557    GBRD01014888    JAG17047.1    JAG50938.1    GANO01000305    JAB59566.1    LSMT01000215    PFX23203.1    DS469634    EDO38021.1    GFTR01008892    JAW07534.1    ACPB03015326    CAEY01001955    GFDF01008716    JAV05368.1    GFDF01008322    JAV05762.1    GBBI01003193    JAC15519.1    NEDP02005549    OWF39002.1    GDIQ01228573    JAK23152.1    GDIQ01212082    JAK39643.1    GDIQ01126562    JAL25164.1    GDIQ01075528    JAN19209.1    GDIQ01106616    JAL45110.1    GDIQ01234078    GDIQ01130261    GDIQ01094969    JAK17647.1    GDIQ01136113    JAL15613.1    GDIQ01155896    JAK95829.1    GFAH01000601    JAV47788.1    GDIQ01075527    JAN19210.1    GDIQ01169445    JAK82280.1    GDIQ01230824    GDIQ01228572    JAK23153.1    GDIQ01138658    JAL13068.1    GDIQ01224673    GDIQ01220578    GDIQ01208379    GDIQ01206828    GDIQ01201933    GDIQ01181801    GDIQ01181799    GDIQ01180493    GDIQ01180491    GDIQ01177544    GDIQ01177543    GDIQ01175686    GDIQ01115072    GDIQ01115070    GDIQ01099678    GDIQ01084576    GDIQ01084573    GDIQ01081576    GDIQ01081573    GDIQ01065637    GDIQ01065635    GDIQ01060791    GDIQ01060790    GDIQ01052240    GDIQ01034242    GDIQ01029848    JAK43346.1    GDIQ01223475    GDIQ01222025    GDIQ01178989    GDIQ01178987    GDIQ01168547    GDIQ01165596    GDIQ01161406    GDIQ01098421    GDIQ01067089    GDIQ01067087    GDIQ01033398    JAK83178.1    GDIQ01249178    GDIQ01242971    GDIQ01238726    GDIQ01235229    GDIQ01234077    GDIQ01219379    GDIQ01219377    GDIQ01200734    GDIQ01199440    GDIQ01198187    GDIQ01142559    GDIQ01141406    GDIQ01130668    GDIQ01130263    GDIQ01126561    GDIQ01117568    GDIQ01116268    GDIQ01116266    GDIQ01113818    GDIQ01113816    GDIQ01094968    GDIQ01080279    GDIQ01080276    GDIQ01064234    GDIQ01064232    GDIQ01050755    GDIQ01049342    GDIQ01046199    JAK17648.1    GDIQ01226976    GDIQ01226975    GDIQ01226973    GDIQ01188936    GDIQ01187489    GDIQ01185892    GDIQ01184142    GDIQ01162700    GDIQ01155897    GDIQ01120116    GDIQ01068482    GDIQ01031200    JAK64236.1    GDIQ01237229    JAK14496.1    GDIQ01142557    GDIQ01141407    GDIQ01080277    GDIQ01064231    JAL09169.1    GDIQ01170397    JAK81328.1    GDIQ01032102    JAN62635.1    GDIQ01178986    GDIQ01067086    JAN27651.1    GDIQ01223474    GDIQ01222026    GDIQ01178988    GDIQ01161405    GDIQ01159846    GDIQ01158049    GDIQ01098422    GDIQ01067088    JAK72737.1    GDIQ01226974    GDIQ01188935    GDIQ01187488    GDIQ01185891    GDIQ01184143    GDIQ01184141    GDIQ01162699    GDIQ01068481    JAK89026.1    GDIQ01240473    JAK11252.1    GDIQ01249177    GDIQ01242970    GDIQ01238779    GDIQ01238725    GDIQ01235228    GDIQ01234076    GDIQ01232772    GDIQ01219378    GDIQ01200733    GDIQ01199441    GDIQ01198188    GDIQ01142558    GDIQ01130669    GDIQ01130262    GDIQ01126560    GDIQ01124811    GDIQ01117569    GDIQ01117567    GDIQ01116267    GDIQ01113817    GDIQ01080278    GDIQ01064233    GDIQ01050756    GDIQ01050754    GDIQ01049343    GDIQ01049341    GDIQ01046200    GDIQ01046198    GDIQ01044194    GDIQ01044193    GDIQ01038942    JAK08755.1    GDIQ01181798    GDIQ01180490    GDIQ01177542    GDIQ01084574    GDIQ01081574    GDIQ01065634    GDIQ01060789    JAN33948.1    GDIQ01253432    GDIQ01253430    GDIQ01253429    JAJ98295.1    GDIQ01122714    JAL29012.1    GDIQ01224674    GDIQ01220579    GDIQ01220577    GDIQ01208378    GDIQ01206829    GDIQ01201934    GDIQ01181800    GDIQ01180492    GDIQ01115071    GDIQ01099679    GDIQ01084575    GDIQ01081575    GDIQ01065636    GDIQ01063238    GDIQ01052241    JAK43347.1    GDIQ01158048    JAK93677.1    GDIQ01253431    GDIQ01245171    GDIQ01245170    JAK06555.1    GDIQ01078029    JAN16708.1    GDIQ01078031    GDIQ01078030    JAN16706.1    GL732530    EFX86185.1    GL448480    EFN84571.1    GFFV01000176    JAV39769.1    NNAY01003867    OXU18742.1    AAZX01000485    GEDC01023186    GEDC01014621    JAS14112.1    JAS22677.1    GEDC01012899    JAS24399.1    GCES01049309    JAR37014.1    BC094345    AAH94345.1    GEDC01029006    JAS08292.1    GCES01148353    JAQ37969.1    GABZ01003493    JAA50032.1    CYRY02014205    VCW84410.1    GCES01010607    JAR75716.1    QCYY01002723    ROT68053.1    GCES01049308    JAR37015.1    AGTP01072993    AGTP01072994    AEMK02000096    DQIR01289215    HDC44693.1    HAAF01008597    CCP80421.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000218220    UP000283053    + More
UP000007266    UP000027135    UP000192223    UP000245037    UP000019118    UP000225706    UP000001593    UP000015103    UP000015104    UP000242188    UP000000305    UP000008237    UP000215335    UP000002358    UP000248480    UP000085678    UP000007646    UP000261681    UP000189704    UP000002280    UP000079721    UP000261460    UP000248484    UP000265300    UP000283509    UP000009136    UP000005215    UP000248482    UP000008227   

PRIDE

H9JC88   

Pfam

PF00271   Helicase_C        + More
PF00176   SNF2_N
PF12054   DUF3535
PF02985   HEAT

Interpro

IPR014001   Helicase_ATP-bd        + More
IPR001650   Helicase_C       
IPR016024   ARM-type_fold       
IPR022707   DUF3535       
IPR000330   SNF2_N       
IPR027417   P-loop_NTPase       
IPR038718   SNF2-like_sf       
IPR011989   ARM-like       
IPR000357   HEAT       
IPR021133   HEAT_type_2       
IPR011030   Lipovitellin_superhlx_dom       

SUPFAM

SSF48371   SSF48371        + More
SSF52540   SSF52540       
SSF48431   SSF48431       

Gene 3D

3.40.50.10810     1.25.10.10    

CDD

cd00079  HELICc

ProteinModelPortal

H9JC88   A0A0N0PC13   A0A194PII4   A0A2H1VKQ2   A0A212ERX3   A0A2A4JRU2   + More
A0A3S2LVQ6   D6WW10   A0A1B6GNR9   V5I965   V5GXE7   A0A1B6MAC8   A0A1Y1K022   A0A1Y1K030   A0A067QSZ1   A0A1W4XGH1   A0A2P8XQ60   N6T163   A0A0A9X8J8   W4VRR5   A0A2B4S2D2   A7SE43   A0A224X9F8   T1HUJ9   T1KBT3   A0A1L8DFY6   A0A1L8DH30   A0A023F3Q0   A0A210PRC8   A0A0P5HFR8   A0A0P5IPU3   A0A0P5R2C6   A0A0P6DVL8   A0A0P5R210   A0A0P5HG23   A0A0P5NY89   A0A0P5MJ26   A0A1W7R9G5   A0A0P6DLX6   A0A0P5LHN4   A0A0P5HDC5   A0A0P5QA39   A0A0N8B6D5   A0A0N8BKL4   A0A0P5H150   A0A0P5KLR5   A0A0P5GV70   A0A0P5NH32   A0A0P5LIR3   A0A0P6GN52   A0A0P6EA79   A0A0P5MI20   A0A0N8BMP5   A0A0P5I7V9   A0A0P5GFX7   A0A0P6ELP2   A0A0P5H8L7   A0A0P5QKT2   A0A0P5IVR8   A0A0P5MKA5   A0A0P5GFY6   A0A0P6EEM9   A0A0P6DFS0   E9G250   E2BIA7   A0A250Y891   A0A232EK91   K7JA91   A0A1B6CL15   A0A2Y9RVR9   A0A1S3HG25   A0A1B6DFE2   A0A2Y9D8P3   A0A1S3HME5   G3TLC7   A0A146X650   Q52KH4   A0A384AK17   A0A384AJP4   A0A1B6C462   A0A146P1Z5   A0A3Q0E7G7   A0A1U7TK09   F7DH73   A0A1S2ZBK1   A0A3B4FAW4   K9IQH6   A0A3P4MW44   A0A147AB07   A0A2Y9SMQ4   A0A340YD53   A0A3R7M072   A0A2Y9SKZ0   A0A146X6M8   F1N507   I3MC54   A0A2Y9J2Z5   I3LTQ1   U6DCU6  

PDB

6G7E     E-value=0.00622898,     Score=91

KEGG

101746640    K15192 TATA-binding protein-associated factor [EC:3.6.4.-] | (RefSeq) TATA-binding protein-associate

GO

GO:0005524   GO:0016021   GO:0005634   GO:0008094   GO:0003677   GO:0004386   GO:0035562   GO:0005654   GO:0043231   GO:0005488   GO:0006281   GO:0051539   GO:0006284   GO:0003906   GO:0006285   GO:0019104   GO:0003824  

Length:

262

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01154

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.09037

outside

1  -  262

 

 

Pi

189.292892

Theta

176.090145

Tajima's D

-1.440146

CLR

104.039076

CSRT

0.0694465276736163

Interpretation

Uncertain