Gene

KWMTBOMO10529

Pre Gene Modal

BGIBMGA007133

Annotation

PREDICTED:_TATA-binding_protein-associated_factor_172_[Bombyx_mori]

Location

Bomo_Chr17(+):13420677-13425961      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.827

CDS

ATGGCTACAAGAAGTGTCATAATAGGCCTCTACAAATTCCCGATCGATTTGGCAGACGTGCTACCTCGTCTGTGGCCGTATTTAGACCATGCGACCTCATCAGTGCGGAAGGCCACACTACAGACTCTCCGCACCCTGACGCGGCCCCTGGTCACCACAGCCGCACCGCGCGCCGACAGCGCCCACAGCCCGCCCCCTGACAACGCCGCGCCCAGTGAAGCCCCACCGAACGGGCTGGACGAACAGTACTTGATGTGGACCCCGGAGCTGTTGCAGGAAGCAATGAGACACGTTTACCAGAGAGTGTTGTTCGAACATATCTATGAAATACAAGAAATTGCAGTGCAAGTGTGGGAGAACCTGATCCGGCACGCGTCCCTGGGCGTGATCCTGGTGGCGGCGTGTCCCATGCTGTCCACGTGGCTGTGCCTGGCCATGCAGCCCGCGCGCCTGGCCGTGGACCCGGCGCTCATACTCGTGCCGCCGCTCAAGGAGCGGCGCACGCGCACGAGCCCGGCGGAGGCGGTGCCGGGCGAGGTGCGCGCGGCGCTGCGCTGGTACGTGGGCGGCGCCGACACGCAGGCCAGCGCCGCGCGGGACAAGAACGTGTCGCGGGCGCGCTGTCTCGCCGCCGACATACTGGGGCACCTGTCGTGCTACCTGGTGCAGCCCGCGCCCGGCATCGACTACACGGCGGAAGAAGAGAGCCCCATCGACTGTTACGTGAAGGTGATGGTGGTGTACCTCCGCTCGGGCAGCGCCCTGCAGCGCCTGGTGGCCAGCCTCGTAGTGTCGGCCTGGGCGCGCCACACGCGGCGCCGCGGCCTCTACCCGCCCCCCGCCCCGCGCCCCGCACACCCGGATGAAGAGAAAGATGAAAATTATGAAACGAACGACATATCAAAGCTGGCTCCGGCGTCGCTGGTGTCCACCCTGCACACGGCGCTCAACCAGGCGCTGTACTATGACGAGGTGGCTCTCAACTGCAACAGGATACTCCAAGAGGCAAGAGATTTTTTGGCGACCTTGAAACATTACAAGTTACCAGTTGACGGTGAGGAGTTCAACAATATTGTGAGATTGGAACAGGTGGTGCAGCTGACGGGCGCCGCGCAGGGCATGGTGAGCCGCATGAAGCCCAAGCGAGCCGCGCCCGCGCTGGACGAGCGCCGCCGCGCGCTGCGGGCCGCCGCCGCGCACACGCACGCCATGCACGCCGCGCTCGCCGTCGCGTACGTACCCCGCCACCGCAGATCAACACATTACACTTGA

Protein

MATRSVIIGLYKFPIDLADVLPRLWPYLDHATSSVRKATLQTLRTLTRPLVTTAAPRADSAHSPPPDNAAPSEAPPNGLDEQYLMWTPELLQEAMRHVYQRVLFEHIYEIQEIAVQVWENLIRHASLGVILVAACPMLSTWLCLAMQPARLAVDPALILVPPLKERRTRTSPAEAVPGEVRAALRWYVGGADTQASAARDKNVSRARCLAADILGHLSCYLVQPAPGIDYTAEEESPIDCYVKVMVVYLRSGSALQRLVASLVVSAWARHTRRRGLYPPPAPRPAHPDEEKDENYETNDISKLAPASLVSTLHTALNQALYYDEVALNCNRILQEARDFLATLKHYKLPVDGEEFNNIVRLEQVVQLTGAAQGMVSRMKPKRAAPALDERRRALRAAAAHTHAMHAALAVAYVPRHRRSTHYT

Uniprot

H9JC88   A0A2H1VKQ2   A0A194PII4   A0A0N0PC13   A0A212ERX3   A0A067QSZ1   + More
A0A1B6DFE2   A0A1B6CL15   A0A1B6C462   A0A1B6MAC8   A0A2P8XQ60   V5I965   A0A1Y1K030   A0A1Y1K022   V5GXE7   A0A1W4XGH1   A0A336KBP6   A0A182N4Z9   A0A0T6B0J0   W4VRR5   A0A182P5N4   A0A182VQT4   A0A182JX29   A0A182M311   A0A182IRV5   D6WW10   B4QXR9   J9XXX0   Q9VF02   A0A182RP11   B4HLF4   A0A084VRP0   A0A182F6W2   A0A182XVA4   B4PR56   A0A1Q3FBY8   A0A1Q3FES8   B3M3A2   Q71V44   A0A182G5L0   A0A1B0GDV1   A0A182SC65   B0W966   A0A1A9V2J1   B3P3Y2   A0A1B0C5A7   Q16JW5   U4TV80   A0A1B0AJ89   A0A182X2P4   A0A182QMB3   A0A0L0C794   N6T163   A0A182UMS2   A0A2M4A3A0   A0A2M4A2S2   A0A1A9X433   A0A182HGR5   Q7PUQ9   A0A0M9A581   A0A310SVY7   W5JFS1   B4N990   A0A2M4CNY7   B4K5P5   Q296N6   A0A1W4VQF4   A0A1I8PPP2   A0A0M4EUQ3   B4GEW7   A0A0K8V4N8   A0A088A8J0   K7JA91   A0A2A3E2Q1   A0A034VBP8   A0A0L7R0W2   A0A232EK91   A0A3B0KDI2   A0A1L8DFY6   B4JT60   A0A1L8DH30   B4LXA1   A0A1J1HY29   E2BIA7   A0A023F3Q0   W8BMY6   T1HUJ9   E0VSS7   A0A224X9F8   A0A026WRV5   A0A1I8MMC4   A0A0A9X8J8   T1SF24   A0A195EV94   A0A0P5YDY7   A0A0P4YCL3   A0A0P5XI11   A0A0P4XWI0  

Pubmed

19121390    26354079    22118469    24845553    29403074    28004739    + More
18362917    19820115    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24438588    25244985    17550304    8774890    26483478    17510324    23537049    26108605    12364791    14747013    17210077    20920257    23761445    15632085    20075255    25348373    28648823    20798317    25474469    24495485    20566863    24508170    25315136    25401762   

EMBL

BABH01015068    BABH01015069    BABH01015070    BABH01015071    BABH01015072    BABH01015073    + More
BABH01015074    ODYU01003086    SOQ41398.1    KQ459603    KPI93127.1    KQ460711    KPJ12690.1    AGBW02012899    OWR44242.1    KK852980    KDR13008.1    GEDC01012899    JAS24399.1    GEDC01023186    GEDC01014621    JAS14112.1    JAS22677.1    GEDC01029006    JAS08292.1    GEBQ01007095    JAT32882.1    PYGN01001559    PSN34064.1    GALX01003475    JAB64991.1    GEZM01096473    JAV54874.1    GEZM01096474    JAV54872.1    GALX01003473    JAB64993.1    UFQS01000046    UFQT01000046    SSW98500.1    SSX18886.1    LJIG01016429    KRT80629.1    GANO01000305    JAB59566.1    AXCM01001504    KQ971361    EFA08205.1    CM000364    EDX12743.1    BT149864    AFS34653.1    AE014297    AAF55260.3    AHN57350.1    CH480815    EDW41974.1    ATLV01015761    KE525036    KFB40634.1    CM000160    EDW97378.1    GFDL01010023    JAV25022.1    GFDL01008997    JAV26048.1    CH902617    EDV43563.1    AF033104    AAB95091.3    JXUM01043776    JXUM01043777    JXUM01043778    CCAG010012029    DS231862    EDS39763.1    CH954181    EDV49088.1    JXJN01025919    CH477989    EAT34577.1    KB631617    ERL84707.1    AXCN02000181    JRES01000819    KNC28122.1    APGK01057067    KB741277    ENN71273.1    GGFK01001797    MBW35118.1    GGFK01001689    MBW35010.1    APCN01005942    AAAB01008987    EAA01172.6    KQ435732    KOX77487.1    KQ759894    OAD62043.1    ADMH02001524    ETN62193.1    CH964232    EDW81637.1    GGFL01002859    MBW67037.1    CH933806    EDW15107.1    CM000070    EAL28421.2    CP012526    ALC46880.1    CH479182    EDW34152.1    GDHF01018412    JAI33902.1    AAZX01000485    KZ288419    PBC25985.1    GAKP01018256    JAC40696.1    KQ414669    KOC64488.1    NNAY01003867    OXU18742.1    OUUW01000008    SPP84299.1    GFDF01008716    JAV05368.1    CH916373    EDV94950.1    GFDF01008322    JAV05762.1    CH940650    EDW66753.2    CVRI01000036    CRK93000.1    GL448480    EFN84571.1    GBBI01003193    JAC15519.1    GAMC01011820    GAMC01011819    JAB94736.1    ACPB03015326    DS235756    EEB16433.1    GFTR01008892    JAW07534.1    KK107119    EZA58663.1    GBHO01026557    GBRD01014888    JAG17047.1    JAG50938.1    JX984954    AGS58422.1    KQ981954    KYN32163.1    GDIP01061027    JAM42688.1    GDIP01230311    JAI93090.1    GDIP01071929    JAM31786.1    GDIP01238016    JAI85385.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000007151    UP000027135    UP000245037    + More
UP000192223    UP000075884    UP000075885    UP000075920    UP000075881    UP000075883    UP000075880    UP000007266    UP000000304    UP000000803    UP000075900    UP000001292    UP000030765    UP000069272    UP000076408    UP000002282    UP000007801    UP000069940    UP000092444    UP000075901    UP000002320    UP000078200    UP000008711    UP000092460    UP000008820    UP000030742    UP000092445    UP000076407    UP000075886    UP000037069    UP000019118    UP000075903    UP000091820    UP000075840    UP000007062    UP000053105    UP000000673    UP000007798    UP000009192    UP000001819    UP000192221    UP000095300    UP000092553    UP000008744    UP000005203    UP000002358    UP000242457    UP000053825    UP000215335    UP000268350    UP000001070    UP000008792    UP000183832    UP000008237    UP000015103    UP000009046    UP000053097    UP000095301    UP000078541   

PRIDE

H9JC88    J9XXX0    Q9VF02    Q71V44   

Pfam

PF00271   Helicase_C        + More
PF00176   SNF2_N
PF12054   DUF3535

Interpro

IPR014001   Helicase_ATP-bd        + More
IPR001650   Helicase_C       
IPR016024   ARM-type_fold       
IPR022707   DUF3535       
IPR000330   SNF2_N       
IPR027417   P-loop_NTPase       
IPR038718   SNF2-like_sf       
IPR011989   ARM-like       
IPR021133   HEAT_type_2       

SUPFAM

SSF48371   SSF48371        + More
SSF52540   SSF52540       

Gene 3D

3.40.50.10810     1.25.10.10    

CDD

cd00079  HELICc

ProteinModelPortal

H9JC88   A0A2H1VKQ2   A0A194PII4   A0A0N0PC13   A0A212ERX3   A0A067QSZ1   + More
A0A1B6DFE2   A0A1B6CL15   A0A1B6C462   A0A1B6MAC8   A0A2P8XQ60   V5I965   A0A1Y1K030   A0A1Y1K022   V5GXE7   A0A1W4XGH1   A0A336KBP6   A0A182N4Z9   A0A0T6B0J0   W4VRR5   A0A182P5N4   A0A182VQT4   A0A182JX29   A0A182M311   A0A182IRV5   D6WW10   B4QXR9   J9XXX0   Q9VF02   A0A182RP11   B4HLF4   A0A084VRP0   A0A182F6W2   A0A182XVA4   B4PR56   A0A1Q3FBY8   A0A1Q3FES8   B3M3A2   Q71V44   A0A182G5L0   A0A1B0GDV1   A0A182SC65   B0W966   A0A1A9V2J1   B3P3Y2   A0A1B0C5A7   Q16JW5   U4TV80   A0A1B0AJ89   A0A182X2P4   A0A182QMB3   A0A0L0C794   N6T163   A0A182UMS2   A0A2M4A3A0   A0A2M4A2S2   A0A1A9X433   A0A182HGR5   Q7PUQ9   A0A0M9A581   A0A310SVY7   W5JFS1   B4N990   A0A2M4CNY7   B4K5P5   Q296N6   A0A1W4VQF4   A0A1I8PPP2   A0A0M4EUQ3   B4GEW7   A0A0K8V4N8   A0A088A8J0   K7JA91   A0A2A3E2Q1   A0A034VBP8   A0A0L7R0W2   A0A232EK91   A0A3B0KDI2   A0A1L8DFY6   B4JT60   A0A1L8DH30   B4LXA1   A0A1J1HY29   E2BIA7   A0A023F3Q0   W8BMY6   T1HUJ9   E0VSS7   A0A224X9F8   A0A026WRV5   A0A1I8MMC4   A0A0A9X8J8   T1SF24   A0A195EV94   A0A0P5YDY7   A0A0P4YCL3   A0A0P5XI11   A0A0P4XWI0  

KEGG

101746640    K15192 TATA-binding protein-associated factor [EC:3.6.4.-] | (RefSeq) TATA-binding protein-associate

GO

GO:0005524   GO:0004003   GO:0006366   GO:0006357   GO:0003677   GO:0008094   GO:0005634   GO:0004386   GO:0016740   GO:0016021  

Length:

423

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

6.1744

Exp number, first 60 AAs:

0.02463

Total prob of N-in:

0.24138

outside

1  -  423

 

 

Pi

145.485196

Theta

132.249367

Tajima's D

0.946454

CLR

0.234202

CSRT

0.641517924103795

Interpretation

Uncertain