Gene

KWMTBOMO10528

Pre Gene Modal

BGIBMGA007133

Annotation

PREDICTED:_TATA-binding_protein-associated_factor_172_[Bombyx_mori]

Location

Bomo_Chr17(+):13379417-13419821      View in EpiBrowser

Full name

Poly [ADP-ribose] polymerase      

Location in the cell

Cytoplasmic   Reliability : 1.522 Nuclear   Reliability : 1.309

CDS

ATGAAGTCGCGATTGGATCGTCTTTTCGTCTTGCTGGAGGCCGGTGCGGGCTCGGCTACAAGGCGAGCGGCGGCGAGGCAGCTCGGCGAGGTCCAGAAAGCCCATCCCGAGGAGTTACACCGGCTCCTCGGCAGACTGATGACACATCTCCGCTCGCCAGCTTGGGAGACAAGAGTCGCTGCAGCTCAAGCGGTCGAAGCGATCCTATCGAACGTTCCGGAATGGCATCCGACACCGCTGGCGGATAAGAAAGAGATTAAACCAGACCCGGAAGATTACGGACTGTTGAAATGTGATACGTTCAACATAGAGCGGGTCCTTCAGAACGGAGCGCACTTGATGGGTTCCGAGGGAAACGAATATGATTTTGACGAGAATGACTTCTCGCTCTCCACAGCAGACGCAAAGGAGCGTATGGCGAAGCAACGGCAGCAGTTAAACACTCGTCTAGGTCTGGACGTTGCGGCCAATCTCGGCGTCGACTTGACCTCTATATACACGAACGAGGACCTGTGCCCGGTCAGACCGCAAACAAACAAGGCTGAACCGCAGAGAATGCCGGTACAAGAACTAGTCCCTATTTCTTCGAAACCGCTCAGTTCACGGGAAAAGAATTTGGCGAAGAGACGAGCTCGTGCCGCTCTCAGCAAACAGAAATCTAGAGACTGCACCGAGGAGTCTACCTCAGCTCCTCCTACGCCCCCGATAGAACCCGAGAAGAAGAAAATGAAATTAGAACAGACTGAAGAGTTTTTTCTGGAGGCAGGAGCAGCAGTGCCGTGCGCCGCCGGCTGGCAGGGGGAGGCGGCTCGGTGGCCCCTGGAGGCGTGGTGCAGCGCGCTACTGACGCAGCTGTTCAGCCCTCACTGGGAGGCTCGCCACGGAGCCGCCAGTGCACTCAGAGAATTACTACGAGCCAAGATAGCCAACACTGCCGGGATCACTCGCTACACCGAGCCTCAACACATGGAGTGTGCGCATCAAGATTGGCTAGAAGACATGGCCTTGAGGTTACTGTGCGTACTGGCGCTGGACCGCTTCGGAGACTTTGTTTCTGATCAGGTGGTGGCGCCAGTAAGGGAAACGTGTGCCCAGACGCTGGGCGTGGCGCTGGCGCAGCTGGACGAGGCCCGCGTGCGCAAGGTGGCGGGCTTGCTGTCCTCGCTGGCCGCGCAGGCGCAGTGGGAGGCCCGCCACGGCGCCCTGCTCGGCTTCAAGTACATGCTGGCCGCCAGGCAGGAGGTGGCGTGCAGCAGCGGCGCCCTGGAGCACCTGATGTCGGGGCTGGAGGACGGCGCCGAGGACGTGTCGGGCGTGGCGGCGGGCGCGCTGGTGCCGGCGGCGGGCGCGCTGGTGTCCGCCCGCCCGCACGCCGCCGCGCGCCTGGTGCAGCGCCTGTGGGGCCTGCTGCGGGACCAGGACGACCTCGCCGCGCCCGCGCACTCCTACATGGCGCTGCTGGCGGCGCTCATGGCGCTGCCGGAGCCGGCGCGACTGCTGCAGTCAGTTACTTTTTTTTATTGCTTAGATGAGTGCACGAGCTCACAGCCCACCTGGTGTTAA

Protein

MKSRLDRLFVLLEAGAGSATRRAAARQLGEVQKAHPEELHRLLGRLMTHLRSPAWETRVAAAQAVEAILSNVPEWHPTPLADKKEIKPDPEDYGLLKCDTFNIERVLQNGAHLMGSEGNEYDFDENDFSLSTADAKERMAKQRQQLNTRLGLDVAANLGVDLTSIYTNEDLCPVRPQTNKAEPQRMPVQELVPISSKPLSSREKNLAKRRARAALSKQKSRDCTEESTSAPPTPPIEPEKKKMKLEQTEEFFLEAGAAVPCAAGWQGEAARWPLEAWCSALLTQLFSPHWEARHGAASALRELLRAKIANTAGITRYTEPQHMECAHQDWLEDMALRLLCVLALDRFGDFVSDQVVAPVRETCAQTLGVALAQLDEARVRKVAGLLSSLAAQAQWEARHGALLGFKYMLAARQEVACSSGALEHLMSGLEDGAEDVSGVAAGALVPAAGALVSARPHAAARLVQRLWGLLRDQDDLAAPAHSYMALLAALMALPEPARLLQSVTFFYCLDECTSSQPTWC

Uniprot

A0A2A4JPQ7   A0A0N0PC13   H9JC88   A0A194PII4   A0A3S2LVQ6   A0A212ERX3   + More
A0A1W4XGH1   A0A1J1HY29   A0A1B6C462   A0A1B6DFE2   A0A1B6CL15   A0A1B0CNY4   A0A0L0C794   A0A1Y1K022   K4MNB1   B0W966   A0A1Y1K030   A0A1L8DH30   A0A1B0C5A7   A0A1A9V2J1   A0A1B0AJ89   B3P3Y2   A0A1B0GDV1   A0A336KBP6   A0A182G5L0   A0A1W4VQF4   B4HLF4   Q9VF02   Q71V44   B4PR56   B8A5E7   F1Q603   A0A1B6GLQ2   D6WW10   A0A060VZV1   A0A1Q3FBY8   A0A1Q3FES8   H3CEF8   A0A3Q3GLT0   L8HYV3   A0A091DCR0   A0A3Q3GTZ7   A0A3Q4I1Z5   A0A1W7R9G5   A0A3B4C2R0   A0A3Q1BAA7   E0VSS7   J9XXX0   A0A3Q1I1G0   A0A3Q2WEA0   A0A3B4VC35   A0A0T6B0J0   A0A2J7RIR9   A0A3B4FAW4  

EC Number

2.4.2.-

Pubmed

26354079    19121390    22118469    26108605    28004739    17994087    + More
26483478    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    8774890    17550304    23594743    18362917    19820115    24755649    15496914    22751099    25186727    20566863   

EMBL

NWSH01000955    PCG73390.1    KQ460711    KPJ12690.1    BABH01015068    BABH01015069    + More
BABH01015070    BABH01015071    BABH01015072    BABH01015073    BABH01015074    KQ459603    KPI93127.1    RSAL01000162    RVE45378.1    AGBW02012899    OWR44242.1    CVRI01000036    CRK93000.1    GEDC01029006    JAS08292.1    GEDC01012899    JAS24399.1    GEDC01023186    GEDC01014621    JAS14112.1    JAS22677.1    AJWK01021173    JRES01000819    KNC28122.1    GEZM01096474    JAV54872.1    BT149867    AFV30171.1    DS231862    EDS39763.1    GEZM01096473    JAV54874.1    GFDF01008322    JAV05762.1    JXJN01025919    CH954181    EDV49088.1    CCAG010012029    UFQS01000046    UFQT01000046    SSW98500.1    SSX18886.1    JXUM01043776    JXUM01043777    JXUM01043778    CH480815    EDW41974.1    AE014297    AAF55260.3    AHN57350.1    AF033104    AAB95091.3    CM000160    EDW97378.1    BX530089    CR792417    GECZ01006397    JAS63372.1    KQ971361    EFA08205.1    FR904307    CDQ58529.1    GFDL01010023    JAV25022.1    GFDL01008997    JAV26048.1    JH882443    ELR49385.1    KN122536    KFO29934.1    GFAH01000601    JAV47788.1    DS235756    EEB16433.1    BT149864    AFS34653.1    LJIG01016429    KRT80629.1    NEVH01003493    PNF40722.1   

Proteomes

UP000218220    UP000053240    UP000005204    UP000053268    UP000283053    UP000007151    + More
UP000192223    UP000183832    UP000092461    UP000037069    UP000002320    UP000092460    UP000078200    UP000092445    UP000008711    UP000092444    UP000069940    UP000192221    UP000001292    UP000000803    UP000002282    UP000000437    UP000007266    UP000193380    UP000007303    UP000261660    UP000028990    UP000261580    UP000261440    UP000257160    UP000009046    UP000265040    UP000264840    UP000261420    UP000235965    UP000261460   

PRIDE

H9JC88    Q9VF02    Q71V44    F1Q603    J9XXX0   

Pfam

PF12054   DUF3535        + More
PF00176   SNF2_N
PF00271   Helicase_C
PF02985   HEAT
PF12796   Ank_2
PF00644   PARP
PF02174   IRS
PF07647   SAM_2
PF00023   Ank

Interpro

IPR011989   ARM-like        + More
IPR016024   ARM-type_fold       
IPR022707   DUF3535       
IPR038718   SNF2-like_sf       
IPR000330   SNF2_N       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR027417   P-loop_NTPase       
IPR000357   HEAT       
IPR021133   HEAT_type_2       
IPR001660   SAM       
IPR012317   Poly(ADP-ribose)pol_cat_dom       
IPR013761   SAM/pointed_sf       
IPR002110   Ankyrin_rpt       
IPR020683   Ankyrin_rpt-contain_dom       
IPR036770   Ankyrin_rpt-contain_sf       
IPR038742   FRS2_PTB       
IPR002404   IRS_PTB       

SUPFAM

SSF48371   SSF48371        + More
SSF52540   SSF52540       
SSF47769   SSF47769       
SSF48403   SSF48403       

Gene 3D

1.25.10.10     3.40.50.10810     1.10.150.50     1.25.40.20    

CDD

cd00079  HELICc
cd01202  PTB_FRS2
cd00204  ANK

ProteinModelPortal

A0A2A4JPQ7   A0A0N0PC13   H9JC88   A0A194PII4   A0A3S2LVQ6   A0A212ERX3   + More
A0A1W4XGH1   A0A1J1HY29   A0A1B6C462   A0A1B6DFE2   A0A1B6CL15   A0A1B0CNY4   A0A0L0C794   A0A1Y1K022   K4MNB1   B0W966   A0A1Y1K030   A0A1L8DH30   A0A1B0C5A7   A0A1A9V2J1   A0A1B0AJ89   B3P3Y2   A0A1B0GDV1   A0A336KBP6   A0A182G5L0   A0A1W4VQF4   B4HLF4   Q9VF02   Q71V44   B4PR56   B8A5E7   F1Q603   A0A1B6GLQ2   D6WW10   A0A060VZV1   A0A1Q3FBY8   A0A1Q3FES8   H3CEF8   A0A3Q3GLT0   L8HYV3   A0A091DCR0   A0A3Q3GTZ7   A0A3Q4I1Z5   A0A1W7R9G5   A0A3B4C2R0   A0A3Q1BAA7   E0VSS7   J9XXX0   A0A3Q1I1G0   A0A3Q2WEA0   A0A3B4VC35   A0A0T6B0J0   A0A2J7RIR9   A0A3B4FAW4  

PDB

6G7E     E-value=2.25473e-26,     Score=297

KEGG

101746640    K15192 TATA-binding protein-associated factor [EC:3.6.4.-] | (RefSeq) TATA-binding protein-associate

GO

GO:0005524   GO:0016021   GO:0006366   GO:0004003   GO:0006357   GO:0003950   GO:0016740   GO:0005488   GO:0006281   GO:0051539   GO:0003677   GO:0006284   GO:0003906   GO:0005634   GO:0006285   GO:0019104   GO:0003824  

Length:

520

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.13426

Exp number, first 60 AAs:

0.00242

Total prob of N-in:

0.00184

outside

1  -  520

 

 

Pi

217.990326

Theta

149.709869

Tajima's D

1.021862

CLR

0.461076

CSRT

0.663466826658667

Interpretation

Uncertain