Gene

KWMTBOMO10521

Pre Gene Modal

BGIBMGA006982

Annotation

PREDICTED:_probable_RNA-binding_protein_46_[Amyelois_transitella]

Location

Bomo_Chr17(-):13339148-13344036      View in EpiBrowser

Full name

Probable RNA-binding protein 46      

Alternative Name

Cancer/testis antigen 68
RNA-binding motif protein 46

Location in the cell

PlasmaMembrane   Reliability : 1.916

CDS

ATGCCTCCTGTTAAGCATTATTCTTCTAGTGAAGTGAATCAGTATGAATTATCAACAAGATTATTGTCTCTTACCGAAAATACCTCTTATACGTTAACTCAAATCAATGGACAACGAATTTATAGGAAAGCTACACACGCTTGGACCGGTCCCGAACCCTCGCGAAGTTGTGAGGTGTTCATCGGTAGGATCCCGCACGATTGCTTCGAAGACAGCTTAGTGCCTCTATTCCAGCAGGCTGGCGAGCTCTTCGAGTTTAGGCTTATGATTAACTTCTCTGGATGGAATAGAGGATACGCTTTCGCCATGTACACCACGGAGGCGGAGGCCGGCAATGCCATACGCTTGTTCAATAACTACATGATCAGGCCGTCTTGGCAGCTGGGTGTGTGCCCTTCGATAAACAACTGTCGCATATTCATATCGCGCATCCCGCCGACGACGCCGTCCGCCGAGATAGTGCGGCTCCTGTACGCGCTCACGGACGAGGTACAGGAGGTGCGCATCCGCCGCGCCGTGGCGTCGTGCGCCGCCATCGTGGAGTACCGCTCGCACCGCGGCGCCGCCATGGCGCGCAAGGCGCTGGTGGCCGCCGCCGCCGCCGCGTGGGGCTGCGGCGCGCGCCCCGCCGTCGACTGGTCCTTGCCGCAGTCGCCGCAGCTGCTCAAGCAATACCGCGAGGTCAGTCATACGATCAACATAGCTAGCTACTGA

Protein

MPPVKHYSSSEVNQYELSTRLLSLTENTSYTLTQINGQRIYRKATHAWTGPEPSRSCEVFIGRIPHDCFEDSLVPLFQQAGELFEFRLMINFSGWNRGYAFAMYTTEAEAGNAIRLFNNYMIRPSWQLGVCPSINNCRIFISRIPPTTPSAEIVRLLYALTDEVQEVRIRRAVASCAAIVEYRSHRGAAMARKALVAAAAAAWGCGARPAVDWSLPQSPQLLKQYREVSHTINIASY

Keywords

Alternative splicing   Complete proteome   Reference proteome   Repeat   RNA-binding  

Feature

chain  Probable RNA-binding protein 46
splice variant  In isoform 2.

Uniprot

A0A2A4K4P8   A0A3S2LW83   A0A2H1VPQ5   A0A194PII0   A0A0N1PIX9   A0A212ERY4   + More
A0A0L7L9H9   H9JBT7   A0A2D4KXG1   W4Y818   A0A2D4LNF2   A0A1L8HTS8   W4Y7Y0   A0A0S7FCH6   B4F6J4   A0A3B3TLC2   A0A3Q2Z9J3   A0A3Q3ED54   A0A3Q2ZPP8   A0A094KI04   A0A2J8PGQ3   A0A2J8TD33   D6RBS9   A0A2K6GDK9   A0A2K6GDK8   A0A2K6GDK6   A0A2K6GDK4   A0A099ZKU3   A0A2K6UPC9   A0A2K6UPB1   A0A087VPX0   A0A093HSK7   A0A3Q0HMU9   A0A2K6UPC1   A0A3Q3LH34   A0A3Q0HIN9   H3CTI1   A0A3Q2GQ87   A0A093QLA3   F6R6T9   F7CWA4   A0A2K5DPN5   A0A091WAB7   A0A2K6UP95   A0A2K5QUJ9   A0A2K5DPH8   A0A1A6GKX2   A0A3L7IG49   A0A3Q3J626   A0A2I2U699   A0A2K5Y6E5   S4R2P5   A0A093EMR7   A0A091NW14   A0A2K5NAP3   K7FG09   Q8TBY0-2   A0A2K6AN84   A0A2K5VG63   A0A2I2YZT4   A0A2R9CH52   A0A2I3LF22   H2QQB7   A0A091LT23   A0A2Y9QCS5   A0A2U3VHL9   G3TF58   A0A2I3GIV6   A0A2J8W0F8   A0A0A0B203   F1RYR7   G1KRA4   A0A091U0P7   A0A091VZN7   A0A093RK00   F7CWB1   A0A091VL52   A0A2K5Y6E6   A0A337S6E1   A0A093FSA3   A0A091JQW1   A0A087R9V2   A0A2I2U8K4   V9KKY2   A0A2K5Y6D9   A0A151PBJ0   A0A1U7QCK9   S4R1Y9   A0A2K5DPI4   A0A2K5QUJ3   A0A091LSM0   A0A2K5NAN9   A0A287BL67   A0A2U3Z9K7   I3MAM9   Q8TBY0-3   A0A2R8MMV6  

Pubmed

26354079    22118469    26227816    19121390    27762356    20431018    + More
15815621    15496914    29704459    17975172    19468303    21183079    17381049    14702039    15489334    22398555    22722832    16136131    24402279    22293439    28071753    30723633   

EMBL

NWSH01000131    PCG79217.1    RSAL01000162    RVE45383.1    ODYU01003698    SOQ42786.1    + More
KQ459603    KPI93122.1    KQ460711    KPJ12685.1    AGBW02012899    OWR44247.1    JTDY01002092    KOB72132.1    BABH01015062    IACL01103937    IACL01103938    LAB13397.1    AAGJ04014765    IACM01023281    IACM01023282    LAB22562.1    CM004466    OCT99450.1    GBYX01467660    GBYX01467657    JAO13960.1    AAMC01023362    BC167901    AAI67901.1    KL348057    KFZ57072.1    NBAG03000215    PNI83195.1    NDHI03003508    PNJ30886.1    AC098869    AC112717    KL894120    KGL81430.1    KL501283    KFO14662.1    KL206458    KFV82460.1    KL423625    KFW89658.1    KK735119    KFR12617.1    LZPO01087773    OBS65987.1    RAZU01000055    RLQ77139.1    AANG04001605    AC102130    AC158935    KK372874    KFV44499.1    KK642484    KFP96804.1    AGCU01009348    AK125877    AK302720    AC009567    CH471056    BC028588    AQIA01056762    CABD030034358    AJFE02078596    AJFE02078597    AHZZ02028050    AHZZ02028051    AACZ04005067    KK764478    KFP45931.1    ADFV01178580    ADFV01178581    ADFV01178582    ADFV01178583    ADFV01178584    NDHI03003405    PNJ63269.1    KL884776    KGM00188.1    AEMK02000067    KK494012    KFQ64567.1    KL411536    KFR08669.1    KL225334    KFW71214.1    KK436111    KFQ90278.1    KK637962    KFV59570.1    KK501302    KFP14026.1    KL226231    KFM10256.1    JW866328    AFO98845.1    AKHW03000533    KYO46289.1    KK509381    KFP62528.1    DQIR01030842    HCZ86317.1    AGTP01064913    AGTP01064914   

Proteomes

UP000218220    UP000283053    UP000053268    UP000053240    UP000007151    UP000037510    + More
UP000005204    UP000007110    UP000186698    UP000008143    UP000261500    UP000264800    UP000005640    UP000233160    UP000053641    UP000233220    UP000053584    UP000189705    UP000261640    UP000007303    UP000265020    UP000008225    UP000233020    UP000053605    UP000233040    UP000092124    UP000273346    UP000261600    UP000011712    UP000233140    UP000000589    UP000233060    UP000007267    UP000233120    UP000233100    UP000001519    UP000240080    UP000028761    UP000002277    UP000248483    UP000245340    UP000007646    UP000001073    UP000053858    UP000008227    UP000001646    UP000053283    UP000054081    UP000053119    UP000053286    UP000050525    UP000189706    UP000005215   

PRIDE

H9JBT7    D6RBS9    S4R2P5    Q8TBY0    F1RYR7    S4R1Y9    + More

Pfam

PF00076   RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR022657   De-COase2_CS       
IPR034442   RBM47       
IPR006535   HnRNP_R/Q_splicing_fac       
IPR034435   RBM46_RRM2       
IPR033111   A1CF       
IPR034440   RBM47_RRM2       
IPR034445   RBM47_RRM3       
IPR034434   RBM46_RRM1       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

CDD

cd12492  RRM2_RBM46
cd12491  RRM2_RBM47
cd12497  RRM3_RBM47
cd12484  RRM1_RBM46

ProteinModelPortal

A0A2A4K4P8   A0A3S2LW83   A0A2H1VPQ5   A0A194PII0   A0A0N1PIX9   A0A212ERY4   + More
A0A0L7L9H9   H9JBT7   A0A2D4KXG1   W4Y818   A0A2D4LNF2   A0A1L8HTS8   W4Y7Y0   A0A0S7FCH6   B4F6J4   A0A3B3TLC2   A0A3Q2Z9J3   A0A3Q3ED54   A0A3Q2ZPP8   A0A094KI04   A0A2J8PGQ3   A0A2J8TD33   D6RBS9   A0A2K6GDK9   A0A2K6GDK8   A0A2K6GDK6   A0A2K6GDK4   A0A099ZKU3   A0A2K6UPC9   A0A2K6UPB1   A0A087VPX0   A0A093HSK7   A0A3Q0HMU9   A0A2K6UPC1   A0A3Q3LH34   A0A3Q0HIN9   H3CTI1   A0A3Q2GQ87   A0A093QLA3   F6R6T9   F7CWA4   A0A2K5DPN5   A0A091WAB7   A0A2K6UP95   A0A2K5QUJ9   A0A2K5DPH8   A0A1A6GKX2   A0A3L7IG49   A0A3Q3J626   A0A2I2U699   A0A2K5Y6E5   S4R2P5   A0A093EMR7   A0A091NW14   A0A2K5NAP3   K7FG09   Q8TBY0-2   A0A2K6AN84   A0A2K5VG63   A0A2I2YZT4   A0A2R9CH52   A0A2I3LF22   H2QQB7   A0A091LT23   A0A2Y9QCS5   A0A2U3VHL9   G3TF58   A0A2I3GIV6   A0A2J8W0F8   A0A0A0B203   F1RYR7   G1KRA4   A0A091U0P7   A0A091VZN7   A0A093RK00   F7CWB1   A0A091VL52   A0A2K5Y6E6   A0A337S6E1   A0A093FSA3   A0A091JQW1   A0A087R9V2   A0A2I2U8K4   V9KKY2   A0A2K5Y6D9   A0A151PBJ0   A0A1U7QCK9   S4R1Y9   A0A2K5DPI4   A0A2K5QUJ3   A0A091LSM0   A0A2K5NAN9   A0A287BL67   A0A2U3Z9K7   I3MAM9   Q8TBY0-3   A0A2R8MMV6  

PDB

6ES4     E-value=2.09101e-21,     Score=250

KEGG

101746496    no KO assigned | (RefSeq) uncharacterized LOC101746496

GO

GO:0003723   GO:0016554   GO:0003729   GO:0005634   GO:0001829   GO:0048255   GO:0003676   GO:0000166   GO:0005524   GO:0016459   GO:0005515   GO:0006413   GO:0031369   GO:0046872   GO:0003824  

PANTHER

PTHR21245:SF6   PTHR21245:SF8  

Length:

237

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.13527

Exp number, first 60 AAs:

0.00036

Total prob of N-in:

0.04326

outside

1  -  237

 

 

Pi

269.815037

Theta

176.731276

Tajima's D

1.544952

CLR

0.189025

CSRT

0.799510024498775

Interpretation

Uncertain