Gene

KWMTBOMO10509  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006986

Annotation

ribosomal_protein_L22_[Bombyx_mori]

Location

Bomo_Chr17(-):13024737-13027506      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.632

CDS

ATGGCAGTAACAAAGAAACCGGTGGCTAAGAAAGCCCAATTGCACCAGAAGACTGGCAAAAAAGGAGTGAAGGGTGGCAAAATCCGCGGCAAAGGCATCAAGCGGAAGATTAACTTAAAATTTACAATCGACTGCACGCATCCCGCTGAGGATAGTATCTTAGACGTAGGTAACTTCGAGAAATACTTGAAGGAACACGTCAAAGTTGAGGGCAAAACAAATAACCTAAGCAATCACGTTGTCGTCGCCAGGGATAAGACGAAAGTCGCTATCACCGCAGACATTCCTTTTTCAAAGAGGTACCTGAAGTATTTAACAAAACGTTACCTCAAGAAGAACAATTTGCGTGACTGGCTTCGAGTGGTGGCCTCCGCTCATGACGCTTACGAACTGCGCTACTTCAACATCAACGCTGACAGCGATAACGAAGACAATGAGGATTAA

Protein

MAVTKKPVAKKAQLHQKTGKKGVKGGKIRGKGIKRKINLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPFSKRYLKYLTKRYLKKNNLRDWLRVVASAHDAYELRYFNINADSDNEDNED

Uniprot

Q5UAR7   A0A1E1WE22   A0A2A4JPQ9   A0A0K8TFV9   Q962T6   A0A3B0EFW8   + More
I4DMA7   A0A0N0PCB0   I4DIM6   E7DZ64   D1LYJ4   G0ZEI2   A0A0L7LNA6   A0A3G1T1P8   S4P4H4   A0A212F577   A0A3S2P1J6   A0A267G018   A0A267DIX7   A0A267DFX9   R9TIQ9   E0VDH0   A0A224XHN5   A0A069DYB9   A0A161M8J1   A0A0U2KCX6   A0A0U2UTS8   R4FLK0   G8JKK2   A0A3L7IA10  

Pubmed

19121390    14668217    22651552    26354079    26227816    23622113    + More
22118469    26621068    20566863    26334808    22679863    29704459   

EMBL

BABH01015035    AY769291    AAV34833.1    GDQN01005820    GDQN01005077    JAT85234.1    + More
JAT85977.1    NWSH01000822    PCG74037.1    GBRD01001535    JAG64286.1    AF400188    ODYU01002382    AAK92160.1    SOQ39809.1    RBVL01000305    RKO09523.1    AK402425    BAM19047.1    KQ460711    KPJ12671.1    AK401144    KQ459603    BAM17766.1    KPI93107.1    HQ424767    ADT80711.1    GU084268    ACY95301.1    JF265060    AEL28891.1    JTDY01000561    KOB76676.1    MG992466    AXY94904.1    GAIX01009027    JAA83533.1    AGBW02010224    OWR48891.1    RSAL01000054    RVE50011.1    NIVC01000633    PAA79445.1    NIVC01004126    NIVC01000940    PAA48512.1    PAA74540.1    NIVC01004210    NIVC01004063    NIVC01002600    NIVC01001122    PAA48193.1    PAA48764.1    PAA56611.1    PAA71990.1    KC989881    KT754417    AGN29654.1    ALS04251.1    DS235076    EEB11426.1    GFTR01004420    JAW12006.1    GBGD01002505    JAC86384.1    GEMB01000159    JAS02954.1    KT754416    ALS04250.1    KT755237    ALS05071.1    ACPB03016514    GAHY01001353    JAA76157.1    JP593131    AER92516.1    RAZU01000078    RLQ75028.1   

Proteomes

UP000005204    UP000218220    UP000276569    UP000053240    UP000053268    UP000037510    + More
UP000007151    UP000283053    UP000215902    UP000009046    UP000015103    UP000273346   

PRIDE

Q5UAR7   

Pfam

PF01776   Ribosomal_L22e        + More
PF10545   MADF_DNA_bdg

Interpro

IPR038526   Ribosomal_L22e_sf        + More
IPR002671   Ribosomal_L22e       
IPR006578   MADF-dom       

Gene 3D

3.30.1360.210    

ProteinModelPortal

Q5UAR7   A0A1E1WE22   A0A2A4JPQ9   A0A0K8TFV9   Q962T6   A0A3B0EFW8   + More
I4DMA7   A0A0N0PCB0   I4DIM6   E7DZ64   D1LYJ4   G0ZEI2   A0A0L7LNA6   A0A3G1T1P8   S4P4H4   A0A212F577   A0A3S2P1J6   A0A267G018   A0A267DIX7   A0A267DFX9   R9TIQ9   E0VDH0   A0A224XHN5   A0A069DYB9   A0A161M8J1   A0A0U2KCX6   A0A0U2UTS8   R4FLK0   G8JKK2   A0A3L7IA10  

PDB

3J92     E-value=1.73746e-22,     Score=256

KEGG

692698    K02891 large subunit ribosomal protein L22e | (RefSeq) RpL22; ribosomal protein L22

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0005840   GO:0005622   GO:0005852   GO:0006413   GO:0031369   GO:0005515   GO:0046872   GO:0003824  

PANTHER

PTHR10064  

Length:

147

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00134

Exp number, first 60 AAs:

0

Total prob of N-in:

0.38645

outside

1  -  147

 

 

Pi

207.078587

Theta

186.520957

Tajima's D

0.292632

CLR

0

CSRT

0.450277486125694

Interpretation

Uncertain