Gene

KWMTBOMO10498

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr17(+):12858314-12862451      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.767

CDS

ATGCGTAGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCACCCTCGAAGTTAGAGAAGTAATAGATAACCTTCAACGTAAGAAGGCACCCGGCTCCGACGGCATCCGCAACCGCGCGTTAAAACTCTTACCAGTCCAACTGATAACAATGTTGGCTACCATCTTAAATGCCGCTATGACGCACTGCATCTTTCCGGCGGTGTGGAAAGAAGCGGACGTTATCGGTATACACAAGCCGGGCAAACCGAATAATGAAACCGCTAGTTACCGTCCGATTAGTCTCCTCCCAGCGATAGGCAAAATTTACGAACGACTCCTTCGGAAACGCCTCTGGGACTTCGTCACCGCGAATAAAATTCTAATAGACGAGCAGTTTGGATTCCGCGCCAAACACTCGTGCGTACAACAAGTGCACCGCCTCACGGAGCACATCTTAATAGGGCTAAATAGGCGTAAACAAATCCCGACCGGCGCCCTCTTCTTCGATGTAGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTGATCTACAAACTGTACAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTTCTTGTCGAACCGTTCGTTTCGATATCGAGTAGAGGGAACTCGTTCTCGTCCCCGTCATCTGACTGCCGGAGTCCCGCAAGGCTCCGCACTCTCCCCGTTACTATTTAGTTTGTATATCAACGATATACCCCGGTCTCCGGAGACCCATCTAGCGCTCTTCGCCGATGACACGGCTATCTACTACTATCGTGTAGGAAGATGTCGTTGCTTCATCGGCGACTCCAGACCGCAGATAGCCGTCGGAGCACCATGGTTCCAGAGGAACGTGGACCTCCACGATGACCTGGAGCTCGACCCCGTCAGTAAGTATCTACAGTCGGCATCGCTGCGCCACTTTGAGAAGGCGGCACGACATGAGAACCCTCTTGTCGTGGCCGCCGGAAACTACATACCCGATCCTGTAGACCGTTTGAACGATGATGATGAAGCCTCCAGAGTAGGAGCTCACGGTCCGCCCGGTGAGAACTGGCTGTCGGAGTGCATAGACAACAAAGTGAATCAGTAA

Protein

MRSRQGGRAQSFPATLEVREVIDNLQRKKAPGSDGIRNRALKLLPVQLITMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPNNETASYRPISLLPAIGKIYERLLRKRLWDFVTANKILIDEQFGFRAKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDVAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRHLTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYYRVGRCRCFIGDSRPQIAVGAPWFQRNVDLHDDLELDPVSKYLQSASLRHFEKAARHENPLVVAAGNYIPDPVDRLNDDDEASRVGAHGPPGENWLSECIDNKVNQ

Uniprot

Q9XXW0   Q93137   Q9BPQ0   O96546   A0A2S2QJM7   A0A2S2PX53   + More
A0A2S2PPK8   J9KC83   X1WXU3   A0A2S2PWA8   A0A023EYS8   X1WN18   A0A2S2NJB5   X1WZH0   A0A2S2RAN7   X1WPZ3   J9LC21   J9LFC9   J9KEU4   J9JS95   J9M522  

Pubmed

10333566    10380107    25474469   

EMBL

AB018558    BAA76304.1    U07847    AAA17752.1    AB055391    BAB21761.1    + More
AF081103    AAC72921.1    GGMS01008766    MBY77969.1    GGMS01000737    MBY69940.1    GGMR01018716    MBY31335.1    ABLF02033757    ABLF02008933    GGMS01000625    MBY69828.1    GBBI01004395    JAC14317.1    ABLF02021177    ABLF02027367    ABLF02066338    GGMR01004661    MBY17280.1    ABLF02034467    GGMS01017914    MBY87117.1    ABLF02024191    ABLF02066493    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02023911    ABLF02040650    ABLF02040651    ABLF02056776    ABLF02028535    ABLF02028545    ABLF02024246   

Proteomes

UP000007819   

PRIDE

Q9XXW0    Q93137    Q9BPQ0   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q93137   Q9BPQ0   O96546   A0A2S2QJM7   A0A2S2PX53   + More
A0A2S2PPK8   J9KC83   X1WXU3   A0A2S2PWA8   A0A023EYS8   X1WN18   A0A2S2NJB5   X1WZH0   A0A2S2RAN7   X1WPZ3   J9LC21   J9LFC9   J9KEU4   J9JS95   J9M522  

PDB

6AR3     E-value=0.00392356,     Score=94

KEGG

101735531    no KO assigned | (RefSeq) uncharacterized LOC101735531

GO

GO:0003964   GO:0004519  

Length:

363

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

13.17106

Exp number, first 60 AAs:

9.67924

Total prob of N-in:

0.60311

outside

1  -  363

 

 

Pi

19.533465

Theta

200.74311

Tajima's D

0.34881

CLR

0.00273

CSRT

0.469376531173441

Interpretation

Uncertain