SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10497
Pre Gene Modal
BGIBMGA006991
Annotation
hypothetical_protein_RR48_03049_[Papilio_machaon]
Location in the cell
PlasmaMembrane   Reliability : 4.795
 

Sequence

CDS
ATGGAAATTGTTCCGGAGTACGGCGGCGGAGCTCGTGTGGTGTGGGCCATGACAGCCGGAGACAGAGAGGTGGAGGCCCAGGCGAAGAAGGGCGAGGATGGAGGCGCAAGCGACCGTGACAGCCGCGCCGCTACCGCACTCAAGCAGTACTGGTGCATAGGACTCAGGATTATTGAACTGATAATCGCCATTATCGCGATCGGTCTGATAGTGAGCCCTCTGTACTCTCAGCATGTGGTCCAATCTGATCTGCGTCACATCGCGCTCATATACTCCGCTTATTCGAGTTTCATAATAATAACGAGCGTTTTAATAATCGCCCGCTTGTTTGGCGAGACGGTCGGCTGGAGGACTTCTATGGCGTTTTCCATACTTGGCGCCATTATGTTCACGGCAGCCGCCGCGGTTATATTCTATGACTGGCACAAATCTTACTACGCGAACCTACGTCCGAACAAACAGACTTACGACCTCCTAATCTCCTCTGGAGTGTTTGCTGTCATCAACGTGCTCGTTTTCATCATCCACGCTGTATTAACTTTCAGAAAGGAAGCCGACTATTGA
Protein
MEIVPEYGGGARVVWAMTAGDREVEAQAKKGEDGGASDRDSRAATALKQYWCIGLRIIELIIAIIAIGLIVSPLYSQHVVQSDLRHIALIYSAYSSFIIITSVLIIARLFGETVGWRTSMAFSILGAIMFTAAAAVIFYDWHKSYYANLRPNKQTYDLLISSGVFAVINVLVFIIHAVLTFRKEADY

Summary

Interpro
IPR038976   Ssk       

Ontologies

Topology

Length:
187
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
88.08787
Exp number, first 60 AAs:
8.04831
Total prob of N-in:
0.48113
outside
1  -  52
TMhelix
53  -  75
inside
76  -  87
TMhelix
88  -  110
outside
111  -  119
TMhelix
120  -  139
inside
140  -  157
TMhelix
158  -  180
outside
181  -  187
 
 

Population Genetic Test Statistics

Pi
294.662992
Theta
174.411838
Tajima's D
2.286424
CLR
0.13161
CSRT
0.92220388980551
Interpretation
Uncertain
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