Gene

KWMTBOMO10484

Pre Gene Modal

BGIBMGA007109

Annotation

PREDICTED:_synaptogyrin-1_[Papilio_polytes]

Location

Bomo_Chr17(+):12361567-12367786      View in EpiBrowser

Full name

Synaptogyrin      

Location in the cell

PlasmaMembrane   Reliability : 4.143

CDS

ATGGATACTTCCGGTGCGTATGGGGGTGGAAAAGCTGGAGGCGCGTTTGACCCTCAGGCTTTTATTCAAAGGCCTCATGTGATCGTCAGGGCGGTATGTTGGCTGTTCAGCGTGATTGTAATGGGCTGCATATCATCCAAGGGCTGGCGTACTGACTCTGATGGGAAGGACCATTGCGTGTACAATGATGACACAAATGCATGTAACTATGGTGTCGGGATATCTGTCATTGCATTCATTGCCTCCGTGGCTTTTATTGTCGGGGAATATCTCTTTGAGCAAATGTCCTCTGTCAAGACTAGGAAGCATTATGTGTTGGCTGACTTAGGTTTTTCTGCATTCTGGGCCTTCTTGTATTTCGTTGGATTCTGCTATTTGTCCAATGCTTGGGGCAAAACTGAGAAGCCACCGATCGGAACGGCGAACAACATGCAGGGCGCTATTGCATTCTGCTTCTTCTCCATATTTGCTTGGGTACTATAA

Protein

MDTSGAYGGGKAGGAFDPQAFIQRPHVIVRAVCWLFSVIVMGCISSKGWRTDSDGKDHCVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSVKTRKHYVLADLGFSAFWAFLYFVGFCYLSNAWGKTEKPPIGTANNMQGAIAFCFFSIFAWVL

Description

Required for the correct formation of synaptic vesicles at nerve terminals and has a role in the regulation of the synaptic vesicle exo-endocytic cycle.

Similarity

Belongs to the synaptogyrin family.

Keywords

Cell junction   Complete proteome   Cytoplasmic vesicle   Endocytosis   Membrane   Reference proteome   Synapse   Transmembrane   Transmembrane helix  

Feature

chain  Synaptogyrin

Uniprot

H9JC64   A0A2H1WNL4   A0A2A4IT78   A0A212ETW9   A0A194PJ72   A0A194QV35   + More
A0A0L7L2K6   K7IWX7   A0A1L8DK58   A0A182FLI4   A0A2M4C037   A0A2M3ZJX8   A0A2M4AWJ9   W5JPY5   A0A232EG97   Q7QHR6   A0A182RLL0   A0A182Y6Y7   A0A182WFM4   A0A1S4H767   A0A182LHC2   A0A182HY67   A0A182WR87   A0A182TQ82   A0A182KEG1   A0A1B0DQH1   A0A182P0U3   A0A182X2H0   A0A139WCN3   A0A0P4W5U2   A0A0P4WBU1   A0A084VR19   A0A182QQH7   A0A1W4XE67   A0A182N3E2   A0A0C9QP57   Q179X6   U5ES59   A0A3L8D9Q5   A0A1W4X3H3   A0A0T6ATJ9   E2BW49   A0A1Y1N4W9   A0A1Y1N9D6   E0W2F9   A0A1Q3F1N5   E9JAT1   A0A158NK62   B0XJV7   A0A182MIH3   A0A2A3ESZ5   V9I940   A0A2J7RIN7   N6UB50   A0A2P2I2E9   A0A1A9WWG9   A0A0K8TLN8   A0A151X6V0   A0A1B0FD35   A0A1A9ZW60   A0A026X282   A0A226D2W5   A0A195EIZ0   F4W8F8   E2B0H6   A0A1B6LJQ0   A0A1B6DG20   W8C650   A0A195C2S2   A0A336LX94   A0A310SML6   A0A1B6JMA7   A0A1I8MAU1   A0A0L0BYV2   A0A1I8PRB5   A0A182G442   A0A0M3QVC9   B4J589   A0A195FAI0   A0A154PHI4   A0A1J1J536   A0A1W7R9G9   A0A0J9U183   B4QEU4   Q7JYV2   B4HQX4   B4LKT8   A0A1D2NHB3   B4N5U2   A0A0K8VFI4   A0A067QTC2   A0A0A1WM75   A0A034WA40   B4KPW5   A0A0A9XTF6   A0A146KP02   A0A1B0C6U1   E9HAI1   A0A3B0J4D0   A0A1A9VEJ3  

Pubmed

19121390    22118469    26354079    26227816    20075255    20920257    + More
23761445    28648823    12364791    25244985    20966253    18362917    19820115    24438588    17510324    30249741    20798317    28004739    20566863    21282665    21347285    23537049    26369729    24508170    21719571    24495485    25315136    26108605    26483478    17994087    22936249    10731132    12537572    23238721    27289101    24845553    25830018    25348373    25401762    26823975    21292972   

EMBL

BABH01014963    BABH01014964    ODYU01009919    SOQ54661.1    NWSH01008677    NWSH01004183    + More
PCG62454.1    PCG65386.1    AGBW02012517    OWR44945.1    KQ459603    KPI93088.1    KQ461137    KPJ08840.1    JTDY01003329    KOB69723.1    AAZX01000579    AAZX01000590    AAZX01000596    AAZX01005918    AAZX01006966    AAZX01007623    AAZX01009279    AAZX01011801    AAZX01015199    AAZX01017225    GFDF01007329    JAV06755.1    GGFJ01009217    MBW58358.1    GGFM01008080    MBW28831.1    GGFK01011829    MBW45150.1    ADMH02000495    ETN66201.1    NNAY01004846    OXU17348.1    AAAB01008816    EAA05258.4    APCN01004496    AJVK01019120    KQ971363    KYB25677.1    GDRN01070525    JAI63865.1    GDRN01070524    JAI63866.1    ATLV01015425    KE525013    KFB40413.1    AXCN02001111    GBYB01005344    JAG75111.1    CH477343    EAT43059.1    GANO01002510    JAB57361.1    QOIP01000011    RLU16619.1    LJIG01022877    KRT78269.1    GL451091    EFN80081.1    GEZM01012950    GEZM01012949    GEZM01012948    JAV92859.1    GEZM01012953    GEZM01012952    GEZM01012951    JAV92856.1    DS235878    EEB19815.1    GFDL01013575    JAV21470.1    GL770679    EFZ10048.1    ADTU01018716    DS233622    EDS30836.1    AXCM01001995    KZ288191    PBC34422.1    JR037155    JR037156    AEY57612.1    AEY57613.1    NEVH01003493    PNF40694.1    APGK01035626    APGK01035627    KB740928    KB632064    ENN77881.1    ERL88472.1    IACF01002384    LAB68040.1    GDAI01002542    JAI15061.1    KQ982472    KYQ56082.1    CCAG010021865    KK107021    EZA62402.1    LNIX01000040    OXA39224.1    KQ978881    KYN27829.1    GL887908    EGI69449.1    GL444608    EFN60818.1    GEBQ01016138    JAT23839.1    GEDC01012706    JAS24592.1    GAMC01004484    GAMC01004483    JAC02072.1    KQ978344    KYM94890.1    UFQT01000198    SSX21591.1    KQ761155    OAD58142.1    GECU01007300    JAT00407.1    JRES01001139    KNC25223.1    JXUM01006943    JXUM01006944    KQ560227    KXJ83740.1    CP012524    ALC42199.1    CH916367    EDW00715.1    KQ981693    KYN37630.1    KQ434905    KZC11267.1    CVRI01000072    CRL07523.1    GFAH01000596    JAV47793.1    CM002911    KMY93580.1    CM000362    EDX06971.1    KMY93579.1    AE013599    AY071753    AAL49375.1    CH480816    EDW47771.1    CH940648    EDW60742.1    LJIJ01000039    ODN04637.1    CH964154    EDW79731.1    GDHF01014668    JAI37646.1    KK852980    KDR12979.1    GBXI01015441    GBXI01014541    GBXI01010780    JAC98850.1    JAC99750.1    JAD03512.1    GAKP01007791    GAKP01007790    JAC51162.1    CH933808    EDW10242.1    GBHO01019582    GBRD01003104    JAG24022.1    JAG62717.1    GDHC01020481    JAP98147.1    JXJN01026987    GL732612    EFX71183.1    OUUW01000001    SPP74272.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000037510    + More
UP000002358    UP000069272    UP000000673    UP000215335    UP000007062    UP000075900    UP000076408    UP000075920    UP000075882    UP000075840    UP000076407    UP000075902    UP000075881    UP000092462    UP000075885    UP000007266    UP000030765    UP000075886    UP000192223    UP000075884    UP000008820    UP000279307    UP000008237    UP000009046    UP000005205    UP000002320    UP000075883    UP000242457    UP000235965    UP000019118    UP000030742    UP000091820    UP000075809    UP000092444    UP000092445    UP000053097    UP000198287    UP000078492    UP000007755    UP000000311    UP000078542    UP000095301    UP000037069    UP000095300    UP000069940    UP000249989    UP000092553    UP000001070    UP000078541    UP000076502    UP000183832    UP000000304    UP000000803    UP000001292    UP000008792    UP000094527    UP000007798    UP000027135    UP000009192    UP000092460    UP000000305    UP000268350    UP000078200   

PRIDE

Q7JYV2   

Pfam

PF01284   MARVEL

Interpro

IPR016579   Synaptogyrin        + More
IPR008253   Marvel       
IPR037386   CCDC40       

ProteinModelPortal

H9JC64   A0A2H1WNL4   A0A2A4IT78   A0A212ETW9   A0A194PJ72   A0A194QV35   + More
A0A0L7L2K6   K7IWX7   A0A1L8DK58   A0A182FLI4   A0A2M4C037   A0A2M3ZJX8   A0A2M4AWJ9   W5JPY5   A0A232EG97   Q7QHR6   A0A182RLL0   A0A182Y6Y7   A0A182WFM4   A0A1S4H767   A0A182LHC2   A0A182HY67   A0A182WR87   A0A182TQ82   A0A182KEG1   A0A1B0DQH1   A0A182P0U3   A0A182X2H0   A0A139WCN3   A0A0P4W5U2   A0A0P4WBU1   A0A084VR19   A0A182QQH7   A0A1W4XE67   A0A182N3E2   A0A0C9QP57   Q179X6   U5ES59   A0A3L8D9Q5   A0A1W4X3H3   A0A0T6ATJ9   E2BW49   A0A1Y1N4W9   A0A1Y1N9D6   E0W2F9   A0A1Q3F1N5   E9JAT1   A0A158NK62   B0XJV7   A0A182MIH3   A0A2A3ESZ5   V9I940   A0A2J7RIN7   N6UB50   A0A2P2I2E9   A0A1A9WWG9   A0A0K8TLN8   A0A151X6V0   A0A1B0FD35   A0A1A9ZW60   A0A026X282   A0A226D2W5   A0A195EIZ0   F4W8F8   E2B0H6   A0A1B6LJQ0   A0A1B6DG20   W8C650   A0A195C2S2   A0A336LX94   A0A310SML6   A0A1B6JMA7   A0A1I8MAU1   A0A0L0BYV2   A0A1I8PRB5   A0A182G442   A0A0M3QVC9   B4J589   A0A195FAI0   A0A154PHI4   A0A1J1J536   A0A1W7R9G9   A0A0J9U183   B4QEU4   Q7JYV2   B4HQX4   B4LKT8   A0A1D2NHB3   B4N5U2   A0A0K8VFI4   A0A067QTC2   A0A0A1WM75   A0A034WA40   B4KPW5   A0A0A9XTF6   A0A146KP02   A0A1B0C6U1   E9HAI1   A0A3B0J4D0   A0A1A9VEJ3  

KEGG

101736592    no KO assigned | (RefSeq) synaptogyrin-1

GO

GO:0016021   GO:0030672   GO:0031594   GO:0060287   GO:0005930   GO:0060271   GO:0035082   GO:0045202   GO:0048489   GO:0016079   GO:0030054   GO:0006897   GO:0016020   GO:0019243   GO:0008237   GO:0005245   GO:0005891   GO:0004674   GO:0006418   GO:0003723   GO:0046872   GO:0003824  

PANTHER

PTHR10838   PTHR16275  

Subcellular location

Membrane  
Cytoplasmic vesicle membrane   In larvae expressed in the synaptic neuropil of the central nervous system.   With evidence from 3 publications.
Cytoplasmic vesicle   In larvae expressed in the synaptic neuropil of the central nervous system.   With evidence from 3 publications.
Secretory vesicle membrane   In larvae expressed in the synaptic neuropil of the central nervous system.   With evidence from 3 publications.
Secretory vesicle   In larvae expressed in the synaptic neuropil of the central nervous system.   With evidence from 3 publications.
Synaptic vesicle membrane   In larvae expressed in the synaptic neuropil of the central nervous system.   With evidence from 3 publications.

Length:

160

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

85.1056400000001

Exp number, first 60 AAs:

21.41101

Total prob of N-in:

0.10770

POSSIBLE N-term signal

sequence

outside

1  -  26

TMhelix

27  -  49

inside

50  -  69

TMhelix

70  -  92

outside

93  -  104

TMhelix

105  -  127

inside

128  -  139

TMhelix

140  -  159

outside

160  -  160

 

 

Pi

201.607877

Theta

181.006472

Tajima's D

0.623347

CLR

0.556289

CSRT

0.550922453877306

Interpretation

Uncertain