Gene

KWMTBOMO10483

Pre Gene Modal

BGIBMGA007108

Annotation

PREDICTED:_caskin-2_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr17(+):12350677-12357007      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.063

CDS

ATGGAGGAGTACGCGCGGCTCTTCATAGAGGCCGGGTACGATCTGCCGACCATAACAAGGATGACTCCCGAGGACCTCACGGCTGTCGGCATCAAGAAGCCCAACCACCGCAAGAGGTTAAAGGCAGAGCTCGCCAATCTCAACGTACCGGATAACTTGCCAGACTACATACCGGGTTCCTTAGAAGAATGGTTGCGGCTTCTACGTTTGGAAGAGTACGGGCCAGCCCTAGTGGCGCAGGGCTATCGCACCGTGCACGACGTCACTCAACTCGCTTGGGAGGATCTAGAGGACATGGGAATAGTGCGACTTGGTCACCAGAAGAAAATACTGCTTGCCATTAAAAGAGTGAAAGACATTAGAGCAGGGAAGAGGAGCATCAGCAACCAGGGATCCTTGGACTTTACAAGGATACAGCCGGGCCAGGATTTATATCCGAGGGAGCGTTACCAGTGGGAGAGGAGTTATCATAAACCTCCTGATCTAAACTTTGACGCCCTAGCGACGCCATTATGTGCCACTGATCTGGTCCCTATACAGATTCGTCATCCCCGCGGCAAATCTCTTGAAAGTCTAGAAGACCCGTCTGAAAGGTCATCCCATACGACATTCTCGCCGGAAGCCGGGTTCTATTACGGCGGCGGACAGTGGAGGCGTTCGTACGATGACGGTGACATCACGCCTACAAACGACAGCTCGTATGAGGGTGGAGGAACATTGCCCCGTCCGCGAGGGCTCGTGCGGCCTCGTCCTGTGGCCAAAATCCAAGCCACACCCGCGTACAGAGACAAGTCGCCGGATTACATGTACGACGAGCTGGCGTACTCGGCGAGGCTGCAACGCGTCGCGTACGGTGCGAGTCCGCACGTAGCCAGAAAGCCGCCCCCGGATCCGCCTAAAAGGCAGAGCTCCCAATACGCCCCGTTTTCCCGGTTCGGACAGACCACAGTGGAAATACACCCCGAGAAGAGTTTGCCTCTCAGTCTGCCAGCGTATCCCAGCTCGGATTCGTTGAGCGTGTCTCTGGATAGTACCGGGTTGCTTCCCCCTCCACCGGCGCCGTCGTCGCCGCCGCGGAGATACGAAGATGATAAACTCAGAACTGGGTCTGATGCTAGTTTCAAGTCGAATTCGAGCACAGAGTCGGACAGCATTCCATTCGCAAACGAAAACGCGGGAACGATAAAGCAGAATCGCGGCCAGATCGCGAGCCGCCCGCACACGGTCGACTACGGACGGTCCGGCATGGGGCACGCCGGCCTGCCGCCCCGGGGCAACGACATAAAGCCGACAACGCCTCACTCGCTGCCCGAACATAAAGACGAAGGGAAAAGCACTGAGCCCGTGGACGTTCTAAATGACATCGGCAACATGCTCGCCAACCTGACGGACGAACTCGACGCCATGTTGGAAGAAGAGAAACGTCAAGGCCTGACCGACTCCTAA

Protein

MEEYARLFIEAGYDLPTITRMTPEDLTAVGIKKPNHRKRLKAELANLNVPDNLPDYIPGSLEEWLRLLRLEEYGPALVAQGYRTVHDVTQLAWEDLEDMGIVRLGHQKKILLAIKRVKDIRAGKRSISNQGSLDFTRIQPGQDLYPRERYQWERSYHKPPDLNFDALATPLCATDLVPIQIRHPRGKSLESLEDPSERSSHTTFSPEAGFYYGGGQWRRSYDDGDITPTNDSSYEGGGTLPRPRGLVRPRPVAKIQATPAYRDKSPDYMYDELAYSARLQRVAYGASPHVARKPPPDPPKRQSSQYAPFSRFGQTTVEIHPEKSLPLSLPAYPSSDSLSVSLDSTGLLPPPPAPSSPPRRYEDDKLRTGSDASFKSNSSTESDSIPFANENAGTIKQNRGQIASRPHTVDYGRSGMGHAGLPPRGNDIKPTTPHSLPEHKDEGKSTEPVDVLNDIGNMLANLTDELDAMLEEEKRQGLTDS

Uniprot

H9JC63   A0A1E1W9V7   A0A194PIE5   A0A194QU47   A0A212ETX7   A0A3S2LDV4   + More
A0A0L7L2P0   A0A1E1WBP6   A0A2A4IZY7   A0A2H8TW87   A0A2S2PZQ0   J9JLM8   A0A1Y1KIR1   A0A0T6B2D4   D6WDR0   A0A1L8DCF7   N6UAH8   U4U6U6   A0A0K8TLR6   A0A1L8DCZ3   A0A1B0CC21   A0A0L7QWA2   A0A0J7L0T6   E2BHT9  

Pubmed

19121390    26354079    22118469    26227816    28004739    18362917    + More
19820115    23537049    26369729    20798317   

EMBL

BABH01014963    GDQN01007264    JAT83790.1    KQ459603    KPI93087.1    KQ461137    + More
KPJ08839.1    AGBW02012517    OWR44946.1    RSAL01000031    RVE51615.1    JTDY01003329    KOB69722.1    GDQN01006697    JAT84357.1    NWSH01004183    PCG65385.1    GFXV01006712    MBW18517.1    GGMS01001802    MBY71005.1    ABLF02037585    GEZM01086514    JAV59276.1    LJIG01016192    KRT81339.1    KQ971322    EEZ99934.1    GFDF01009948    JAV04136.1    APGK01042609    APGK01042610    KB741007    ENN75612.1    KB632182    ERL89619.1    GDAI01002314    JAI15289.1    GFDF01009755    JAV04329.1    AJWK01006095    KQ414716    KOC62908.1    LBMM01001499    KMQ96203.1    GL448324    EFN84772.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000007151    UP000283053    UP000037510    + More
UP000218220    UP000007819    UP000007266    UP000019118    UP000030742    UP000092461    UP000053825    UP000036403    UP000008237   

PRIDE

H9JC63   

Pfam

PF00536   SAM_1

Interpro

IPR035497   Caskin1/2_SAM_1        + More
IPR013761   SAM/pointed_sf       
IPR001660   SAM       
IPR035498   Caskin1/2_SAM_2       

SUPFAM

SSF47769   SSF47769       

Gene 3D

1.10.150.50    

CDD

cd09497  SAM_caskin1_2_repeat1
cd09498  SAM_caskin1_2_repeat2

ProteinModelPortal

H9JC63   A0A1E1W9V7   A0A194PIE5   A0A194QU47   A0A212ETX7   A0A3S2LDV4   + More
A0A0L7L2P0   A0A1E1WBP6   A0A2A4IZY7   A0A2H8TW87   A0A2S2PZQ0   J9JLM8   A0A1Y1KIR1   A0A0T6B2D4   D6WDR0   A0A1L8DCF7   N6UAH8   U4U6U6   A0A0K8TLR6   A0A1L8DCZ3   A0A1B0CC21   A0A0L7QWA2   A0A0J7L0T6   E2BHT9  

PDB

3SEI     E-value=4.583e-29,     Score=319

KEGG

101736209    no KO assigned | (RefSeq) caskin-2

GO

GO:0005515   GO:0019243   GO:0008237   GO:0005245   GO:0005891   GO:0004674   GO:0006418   GO:0003723   GO:0046872   GO:0003824  

Length:

481

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00017

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.00143

outside

1  -  481

 

 

Pi

167.792397

Theta

160.784378

Tajima's D

0.368605

CLR

0.961281

CSRT

0.468126593670317

Interpretation

Uncertain