SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10477
Pre Gene Modal
BGIBMGA007106
Annotation
PREDICTED:_caskin-2_isoform_X3_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.889
 

Sequence

CDS
ATGACAATCGATAAAGCCGGCCGTCCGCCCGCACCGCGACGAGCTTCGTCCACATACAGAAGCTACGACGAACTCGGCAACTTAGAAAAAGGCAGACCACTAAAGTACAGGCACGGAGGCTTCGAGGACCTTACAGGAATAGAGCGAAGGATGTACGATTACCAAAACATGGACGATATTACTGTTATCAGTTCTGAGGAGCTGCCAAAGCCTCGAAGGAGAACAATAGAAGGGATCGCTAATGGATTCAGGCGGACGTTTTCCGTCAGGAGTCGCAGAGGAGGAGAGCCCGAAGGAGTTGCTATGGAAACATTCAATGTGACCTATGAAGAAAATTTCGCAACAGTTAGAGGCGCTCCCTTTGGTAGACGCAGGTCGCTGTCGCGTGACCGAGGTTCGTCTTTATTGGCTAGGAGTTCGTCGGAAGGTGATGTGAGGATGTCGCTTCCACGTGCACCGCCTGCCACGCCGACCCCACGTCTACACCGCTGCCTCCGTGCTCTAGGCGGAAGCTGGAAGAATCTATTACTATGTGAGTTTTAG
Protein
MTIDKAGRPPAPRRASSTYRSYDELGNLEKGRPLKYRHGGFEDLTGIERRMYDYQNMDDITVISSEELPKPRRRTIEGIANGFRRTFSVRSRRGGEPEGVAMETFNVTYEENFATVRGAPFGRRRSLSRDRGSSLLARSSSEGDVRMSLPRAPPATPTPRLHRCLRALGGSWKNLLLCEF

Summary

Pfam
PF00536   SAM_1
Interpro
IPR001660   SAM        + More
IPR013761   SAM/pointed_sf       
IPR035497   Caskin1/2_SAM_1       
SUPFAM
SSF47769   SSF47769       
Gene 3D

Ontologies

GO

Topology

Length:
180
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.11274
outside
1  -  180
 
 

Population Genetic Test Statistics

Pi
244.894003
Theta
175.990759
Tajima's D
0.976848
CLR
0.28872
CSRT
0.655667216639168
Interpretation
Uncertain
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