Gene

KWMTBOMO10476

Annotation

PREDICTED:_uncharacterized_protein_LOC106143260_[Amyelois_transitella]

Location

Bomo_Chr17(-):12164800-12165996      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.973

CDS

ATGCAGTCCGAAGCTACCGACGATGTGCTACTGGGAGGAACCTACCGTGTAGGAGTGAAGACGCCTAAGTTCAACCCCGAAGACCCAGAACTGTGGTTTGCTCAGCTGGAAGGGCAGTTCACCTTGTCCAATATAAGCGCAGACGCCACGAAGTTCTACTACGTGTTGTCGCAACTGGAACCGCAGCATGCAGCAGAAATCCGGGAGTTGATCGTGTCACCTCCAGCCACCAACAAATATGAGACGATCAAACATGAACTCATACGGAGATTATCAGCTTCGCAAGAAAAGAAGATTAAGCAATTGTTGATGCATGAGGAGATGGGAGATCGCAAACCTACACAGTTCCTTCGACACCTGCAGCTTCTGGCCGGAGAAAATGTTCCGAGCGACTTCATCCGCACCATCTGGGCAAGTCGCTTACCTACTCATCTGCAGACATGCATAGCAGCGCAGCAAACTAAGATGTCACTAGAAGATTTAGCCGAACTTGCAGATCGTGTCAATGATGTCGTTCCAGTAACCATGCAAGTAGCAAGTCAAGTAGCCAGTTTGTCAACATCTGCTGTCATACCAAGCACCATTGACGCGTTGACCCGTAAAGTGGAGGAACTCAGTCGAAAACTCGAGACTATGAGTATGGATCTACGCAGACGCCCACGGCCACGCTTTAAAGAAAGTTGGAACTCAAGAAGTCGCTCACGTTCCCGTTCTCGTCCAAGCGATCATCCATACTGCTTCTTCCACTACCGCTTTGGAGAGCGAGCAAGAAGATGCACCCAGCCATGTACCTACCAGAAGGCGGGAAACTCCCAAGGCAGCCAATAG

Protein

MQSEATDDVLLGGTYRVGVKTPKFNPEDPELWFAQLEGQFTLSNISADATKFYYVLSQLEPQHAAEIRELIVSPPATNKYETIKHELIRRLSASQEKKIKQLLMHEEMGDRKPTQFLRHLQLLAGENVPSDFIRTIWASRLPTHLQTCIAAQQTKMSLEDLAELADRVNDVVPVTMQVASQVASLSTSAVIPSTIDALTRKVEELSRKLETMSMDLRRRPRPRFKESWNSRSRSRSRSRPSDHPYCFFHYRFGERARRCTQPCTYQKAGNSQGSQ

Uniprot

A0A2A4J8M7   A0A2H1WXE7   A0A1E1W488   A0A2A4K2H4   A0A0J7K6V3   A0A1Y1MXV9   + More
A0A0J7K7T5   A0A0J7KD10   A0A151IZ47   A0A0J7K6I6   A0A0J7K0A7   A0A151ITG2   A0A151JCH0   A0A151K0A8   A0A0L7QJB5   A0A1W4XBP5   A0A212FK08   A0A0L7QK36   E2BBH0   A0A2J7RGP3   A0A2J7QH56   A0A151J3D2   A0A154P674   A0A1W4WYX3   A0A2J7PML8   A0A154PMS5   A0A085NBV3   A0A2J7QJD3   A0A0L7QMU1   A0A1W4X3X8   A0A2J7RQK2   A0A085LTM6   A0A139W8U7   A0A151INI0   A0A085N4U2   A0A0L7QJ51   A0A2G8JL30   A0A151JBY5   A0A2G8L3A3   A0A0L7QS28   A0A2J7QTC8   A0A085N387   A0A2G8LNJ3   A0A0J7K6V1   A0A0L7QJ97   W8B3F8   A0A2J7PLR6   A0A085N3N9   A0A2J7PCS9   A0A154NZG0   G4V682   G4VI25   G4M0C7   G4M134   G4LVX0   C4Q8R4   C1M100   G4VQT6   Q4QQD5   G4VMA7   C1M2Q9   G4VLV9   A0A1X7VA78   G4VR49   A0A3Q0KR72   G4V8M5   A0A3Q0KTC5   G4V7W9   G4LWP6   Q5DFB3   G4VB42   G4VT83   C4Q5J7   C4Q670   A0A1W4X6B7   G4VLM4   A0A095C1W4   A0A095A469   G4VET2   G4LYY1   G4LZM4   T1IE13   C4PZS3   G4LYI9   G4VQF8   G4M0Y7   A0A3Q0KKC0   A0A2J7Q198   A0A183MLW4   G4LVP1   G4V9Y5   G4LVK6  

Pubmed

28004739    22118469    20798317    24929829    18362917    19820115    + More
29023486    24495485    22253936    15939396    16617374    22246508   

EMBL

NWSH01002598    PCG67884.1    ODYU01011787    SOQ57731.1    GDQN01009305    JAT81749.1    + More
NWSH01000267    PCG77880.1    LBMM01012479    KMQ86203.1    GEZM01017686    JAV90494.1    LBMM01012075    KMQ86422.1    LBMM01009142    KMQ88358.1    KQ980726    KYN14011.1    LBMM01013103    KMQ85816.1    LBMM01018089    KMQ83878.1    KQ981018    KYN10257.1    KQ979048    KYN23218.1    KQ981301    KYN43041.1    LHQN01021927    LHQN01025379    KOC58628.1    KOC58659.1    AGBW02008172    OWR54062.1    KQ414987    KOC58988.1    GL447057    EFN86960.1    NEVH01003759    PNF40011.1    NEVH01014357    PNF27922.1    KQ980296    KYN16851.1    KQ434816    KZC06854.1    NEVH01023981    PNF17578.1    KQ434992    KZC13185.1    KL367519    KFD66949.1    NEVH01013558    PNF28672.1    KQ414874    KOC59935.1    NEVH01000707    PNF43124.1    KL363297    KFD48322.1    KQ972957    KXZ75711.1    KQ976962    KYN06788.1    KL367555    KFD64488.1    LHQN01026442    KQ414593    KOC58672.1    KOC70162.1    MRZV01001674    PIK36447.1    KQ979103    KYN22624.1    MRZV01001127    MRZV01000236    PIK40395.1    PIK54731.1    KQ414761    KOC61433.1    NEVH01011195    PNF31836.1    KL367564    KFD63933.1    MRZV01000025    PIK61772.1    LBMM01012923    LBMM01012917    KMQ85926.1    KMQ85930.1    KQ415240    KOC58703.1    GAMC01010905    JAB95650.1    NEVH01024424    PNF17276.1    KL367562    KFD64085.1    NEVH01026435    PNF14140.1    KQ434784    KZC04993.1    HE601624    CCD74711.1    HE601627    CCD79076.1    CABG01000076    CCD60595.1    CABG01000094    CCD60852.1    CABG01000020    CCD59058.1    HE601625    HE601629    HE601631    CCD77013.1    CCD77288.1    CCD80388.1    CCD80486.1    CCD81882.1    HE601630    CCD75315.1    CCD80887.1    CCD81548.1    BN000802    CAJ00249.1    CCD80612.1    CCD75326.1    CCD79184.1    CCD79457.1    CCD80464.1    CCD81588.1    CCD75122.1    CCD76048.1    CABG01000031    CCD59329.1    AY813761    AAW25493.1    CCD76553.1    CCD83017.1    CABG01000123    CAZ30728.1    CABG01000177    CAZ30951.2    CCD80379.1    KL250698    KGB35593.1    KL252020    KGB41652.1    HE601626    CCD78440.1    CABG01000053    CCD60106.1    CABG01000063    CCD60342.1    ACPB03037918    CABG01000084    CAZ28664.1    CABG01000047    CCD59971.1    CCD81487.1    CABG01000090    CCD60804.1    NEVH01019603    PNF22346.1    UZAI01017274    VDP22787.1    CABG01000017    CCD58980.1    CCD75389.1    CABG01000015    CCD58945.1   

Proteomes

UP000218220    UP000036403    UP000078492    UP000078541    UP000053825    UP000192223    + More
UP000007151    UP000008237    UP000235965    UP000076502    UP000007266    UP000078542    UP000230750    UP000008854    UP000007879    UP000015103    UP000050790    UP000277204   

Pfam

PF17921   Integrase_H2C2        + More
PF00665   rve
PF00078   RVT_1
PF17919   RT_RNaseH_2

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR001995   Peptidase_A2_cat       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR000477   RT_dom       
IPR041577   RT_RNaseH_2       
IPR001969   Aspartic_peptidase_AS       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       

Gene 3D

2.40.70.10     3.30.420.10    

ProteinModelPortal

A0A2A4J8M7   A0A2H1WXE7   A0A1E1W488   A0A2A4K2H4   A0A0J7K6V3   A0A1Y1MXV9   + More
A0A0J7K7T5   A0A0J7KD10   A0A151IZ47   A0A0J7K6I6   A0A0J7K0A7   A0A151ITG2   A0A151JCH0   A0A151K0A8   A0A0L7QJB5   A0A1W4XBP5   A0A212FK08   A0A0L7QK36   E2BBH0   A0A2J7RGP3   A0A2J7QH56   A0A151J3D2   A0A154P674   A0A1W4WYX3   A0A2J7PML8   A0A154PMS5   A0A085NBV3   A0A2J7QJD3   A0A0L7QMU1   A0A1W4X3X8   A0A2J7RQK2   A0A085LTM6   A0A139W8U7   A0A151INI0   A0A085N4U2   A0A0L7QJ51   A0A2G8JL30   A0A151JBY5   A0A2G8L3A3   A0A0L7QS28   A0A2J7QTC8   A0A085N387   A0A2G8LNJ3   A0A0J7K6V1   A0A0L7QJ97   W8B3F8   A0A2J7PLR6   A0A085N3N9   A0A2J7PCS9   A0A154NZG0   G4V682   G4VI25   G4M0C7   G4M134   G4LVX0   C4Q8R4   C1M100   G4VQT6   Q4QQD5   G4VMA7   C1M2Q9   G4VLV9   A0A1X7VA78   G4VR49   A0A3Q0KR72   G4V8M5   A0A3Q0KTC5   G4V7W9   G4LWP6   Q5DFB3   G4VB42   G4VT83   C4Q5J7   C4Q670   A0A1W4X6B7   G4VLM4   A0A095C1W4   A0A095A469   G4VET2   G4LYY1   G4LZM4   T1IE13   C4PZS3   G4LYI9   G4VQF8   G4M0Y7   A0A3Q0KKC0   A0A2J7Q198   A0A183MLW4   G4LVP1   G4V9Y5   G4LVK6  

KEGG

NA   

GO

GO:0004190   GO:0003676   GO:0005634   GO:0015074  

Length:

275

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0023

Exp number, first 60 AAs:

0.00025

Total prob of N-in:

0.03536

outside

1  -  275

 

 

Pi

230.642287

Theta

107.288311

Tajima's D

3.589916

CLR

0.359159

CSRT

0.996250187490625

Interpretation

Uncertain