Gene

KWMTBOMO10475

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr17(-):12153284-12156356      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2

CDS

ATGAAAGTCGACAAAAGAAAAAGAGTTTTTTCGGCGGATCCCCATTCCACGTTTAATGTGGATTTCAGCAATGTCAGGGGCCTACACAGTAACCTTGACGCCGTACATCACCACCTTGAGACGGCGCAGCCTGCCCTCTTTTTCCTGACTGAGACGCAGATATCTGCCCCGGACGATACGTCGTACCTCGGATACCCCGGCTACGCATTGGAGCACACCTTCCTGCGTAAAGCCGGGGTGTGCGTGTTTATCCGGGAGGATGTCTGCTGTCGTCGGCTTCGGGGCCTCGAGCAACGGGACCTGTCCCTCTTGTGGCTACGCGTGGACTATGGGGGCTGTACCAGAGTTTACGCTTGCCTGTACAGGTCTCACAGCAGTGATGCGGGGTCAGCTCTGTTTGAACATGTACAAGAGGGGACTGACCGCGTGCTTGAGCAGTACCCATCTGCGGAGGTGGTGGTCCTTGGTGACTTTAACGCTCATCACCAGGAGTGGTTGGGGTCCAGAACCACTGACCTCCCGGGTCGGGCTGCCTACGATTTCGCCTTGTCCTACGGCCTCTCACAACTGGTGACACAGCCCACCCGTGTCCCAGACATTGAGGGGCACGAGCCTTCTTTGTTGGACCTTCTGCTGACCACTCACCCAGCTGGATACAGTGTGGTGGTCGACGCTCCACTTGGATCGTCTGATCACTGCCTTATCCGTGCTGCCATACCACTCTCTCGTCCTAGTCGTCGAACGACGACCGGGTTTCGAAGAGTTTGGCGGTACAGGTCAGCAGACTGGGATGGAATGCGTGAATTTTACGCATCCTACCCATGGGGGCGGCTCTGCTTTTCCTCCGATGATCCTGACGTCTGTGCGGACCGACTTAAAGACGTGGTGCTTCAGGGAATGGAATTATTCATTCCTTCTTCTGAGGTGCCCGTTGGGGGTCGCAGCAAACCCTGGTATAATAAAGCCAGTAGGGATGCTGCACGCCTCAAGCGGTCTGCATACGTGGCATTTAATGTTGCTAGGAGATGCCGGGATCCTGATATCTCGGAGAAAAGGCGGAAATTTAACGCCGCCTCTAGGTCCTATAAGAGGGCTATTGCCAAGGCGAAGTCGGAGCACGTTGTCAGAATTGGCGAGCGACTGAATAGCTATCCCTCTGGGAGCCGTGCTTTCTGGTCGCTAGCTAAGGCTGCAGAAGGTAACTTCTGCAGGTCTAGCCTTCCACCACTGCGTAAGTCCAATGACAGTCTGGCTCATAGTGCGAAGGAGAAGGCTGACCTTCTGGTCAAGCTCTTTGCCTCATACTCGACTTTGGATGACGGAGGAGCCACGCCGCCCAACATCTCCCGGTGTGACAGCTCCATGCCTGAGATTCGCATCACACAGCGTGCGGTCAGGCAGGAGCTTCGGCTTCTTGATGTCCATAAGTCGAGTGGGCCAGATTGCATCCCCGCAGTGGTTCTAAAAACATGCGCCCCTGAATTGACACCCGCGCTAACGCGTCTATATCGCCTCTCGTATAATACCAACAGGGTTCCGTCTTCATGGAAGACTGCTCATGTCCACCCTATCCCCAAGAAGGGTGACCGGTCGGACCCCTCGAATTACAGACCTATCGCGATAACTTCCTTGCTTTCCAAGGTGATGGAGCGAATCATAAACACCCAACTTCTTAAGTATCTTGAGGATCGCCAGCTGACCAGTGACCGGCAGTACGGTTTCCGTCATGGTCGCTCAGCTGGCGATCTTCTTGTATACCTCACACATAAATGGGCTGAAGCCTTGGAAAGCAAGGGCGAGGCTCTCGCTGTGAGCCTTGACATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTATCGAAGCTTCCAGCATACGGGATCCCTGAGGGACTCTGCAAGTGGATCACTAGCTTTTTGGATGGACGGAGCATCGCAGTTGTCGTCGACGGCTGCTGCTCCGATACCATGACCATCAACGCTGGTGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATACTGCATATCAATGACATGCTATCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGAAGCGTTGTACACGAGAGGCGATTAAAACTTGTGTCTGAAGTGGAGAACTCTTTGGGGCGGGTCTCCAAGTGGGGTGAACTGAATTCAGTTCAGTTCAACCCATTGAAGACACAGGTTTGCGCGTTCACTGCGAAGAAGGACCCTTTTGTCATGGCGCCGGAATTTCAAGGAGTATCCCTGCAGCTTTCCGCGAGTATCGGGATTCTGGGGGTCGATATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGTAAAGCCAAATTGGCCTCTAAAATGTTGGGAGTTCTCAACAGAGCGAAGCGGTATTTCACGCCTGGACAGAGACTTGCGCTTTATAAAGCGCAGGTCCGACCTCGCGTGGAGTACTGCTCTCACCTCTGGGCCGGGGCTCCCAAATACCAGCTACTTCCATTTGACTCCATACAGAAACGGGCTGTTCGGATAGTCGATAGTCCTGCTCTCGCGGATCGCTTGGAACCTCTGGGTCTACGGAGGGACTTCGGTTCTCTCTGTGTTTTATACCGCATGGTCCATGGGGAATGCTCTGAGGAATTATTCGAGATGATTCCCTCATCTCCTTTTTATCATCGCACCTCCCGCCATCGGAGCAGAGTTCATCCATATTATCTGGAACCGCTGCGTTCATCGACAGTGCGTTTCCAAAGATCTTTTTTGCCACGTACCATCCGGCTTTGGAATGAACTCCCCTCCACGGTATTTTCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGCGGAGAGTTCTTTATGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGACGTCCATGAGCGACGGTGA

Protein

MKVDKRKRVFSADPHSTFNVDFSNVRGLHSNLDAVHHHLETAQPALFFLTETQISAPDDTSYLGYPGYALEHTFLRKAGVCVFIREDVCCRRLRGLEQRDLSLLWLRVDYGGCTRVYACLYRSHSSDAGSALFEHVQEGTDRVLEQYPSAEVVVLGDFNAHHQEWLGSRTTDLPGRAAYDFALSYGLSQLVTQPTRVPDIEGHEPSLLDLLLTTHPAGYSVVVDAPLGSSDHCLIRAAIPLSRPSRRTTTGFRRVWRYRSADWDGMREFYASYPWGRLCFSSDDPDVCADRLKDVVLQGMELFIPSSEVPVGGRSKPWYNKASRDAARLKRSAYVAFNVARRCRDPDISEKRRKFNAASRSYKRAIAKAKSEHVVRIGERLNSYPSGSRAFWSLAKAAEGNFCRSSLPPLRKSNDSLAHSAKEKADLLVKLFASYSTLDDGGATPPNISRCDSSMPEIRITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRSDPSNYRPIAITSLLSKVMERIINTQLLKYLEDRQLTSDRQYGFRHGRSAGDLLVYLTHKWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPAYGIPEGLCKWITSFLDGRSIAVVVDGCCSDTMTINAGVPQGSVLSPTLFILHINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVHERRLKLVSEVENSLGRVSKWGELNSVQFNPLKTQVCAFTAKKDPFVMAPEFQGVSLQLSASIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLALYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQKRAVRIVDSPALADRLEPLGLRRDFGSLCVLYRMVHGECSEELFEMIPSSPFYHRTSRHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFSERYDMSFFKRGLRRVLYGRQRLGSAPGIADVHERR

Uniprot

Q6UV17   A0A3S2M451   A0A3S2NTH0   A0A3S2LQP1   A0A3D5S1K1   T2M4I6   + More
A0A0P4VTV9   A0A0P4VVV8   A0A0P4VPK5   A0A2H9T4U7   A0A2H9T4N9   A0A0P4VX79   Q8WS60   W4XUR2   A0A2H9T4F1   W4YEI4   A0A2H9T5P0   W4XMI9   A0A2H9T3F5   A0A2H9T441   A0A147BMW1   A0A1E1XNY6   W4YK32   A0A147BU27   W4Y4X9   A0A2B4RAD6   A0A210QEX7  

Pubmed

30148503    24065732    29150518    11733140    29652888    29209593    + More
28812685   

EMBL

AY359886    AAQ57129.1    RSAL01000041    RVE50934.1    RSAL01000090    RVE48098.1    + More
RSAL01000422    RVE41792.1    DPOC01000269    HCX22453.1    HAAD01000593    CDG66825.1    GDRN01111334    JAI56796.1    GDRN01111277    JAI56804.1    GDRN01111278    JAI56803.1    NSIT01000225    PJE78229.1    NSIT01000234    PJE78200.1    GDRN01111326    JAI56798.1    AH011247    AAL40415.1    AAGJ04060226    NSIT01000271    PJE78081.1    AAGJ04103823    NSIT01000164    PJE78524.1    AAGJ04112043    NSIT01000412    PJE77717.1    NSIT01000300    PJE77993.1    GEGO01003274    JAR92130.1    GFAA01002675    JAU00760.1    AAGJ04029969    GEGO01001118    JAR94286.1    AAGJ04110620    LSMT01000899    PFX13773.1    NEDP02004020    OWF47171.1   

Proteomes

UP000283053    UP000007110    UP000225706    UP000242188   

PRIDE

Q6UV17   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00002   7tm_2
PF04939   RRS1
PF01585   G-patch
PF02460   Patched
PF00096   zf-C2H2
PF03372   Exo_endo_phos
PF12017   Tnp_P_element

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000832   GPCR_2_secretin-like       
IPR017981   GPCR_2-like       
IPR007023   Ribosom_reg       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       
IPR035979   RBD_domain_sf       
IPR030223   Dispatched       
IPR003392   Ptc/Disp       
IPR000731   SSD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR011011   Znf_FYVE_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR019786   Zinc_finger_PHD-type_CS       
IPR019787   Znf_PHD-finger       
IPR021896   Transposase_37       

SUPFAM

SSF56219   SSF56219        + More
SSF54928   SSF54928       
SSF57667   SSF57667       
SSF57903   SSF57903       

Gene 3D

3.60.10.10     3.30.70.330     3.30.40.10    

CDD

cd12647  RRM_UHM_SPF45

ProteinModelPortal

Q6UV17   A0A3S2M451   A0A3S2NTH0   A0A3S2LQP1   A0A3D5S1K1   T2M4I6   + More
A0A0P4VTV9   A0A0P4VVV8   A0A0P4VPK5   A0A2H9T4U7   A0A2H9T4N9   A0A0P4VX79   Q8WS60   W4XUR2   A0A2H9T4F1   W4YEI4   A0A2H9T5P0   W4XMI9   A0A2H9T3F5   A0A2H9T441   A0A147BMW1   A0A1E1XNY6   W4YK32   A0A147BU27   W4Y4X9   A0A2B4RAD6   A0A210QEX7  

PDB

6AR3     E-value=3.81675e-05,     Score=116

KEGG

105842661    no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964   GO:0004519   GO:0016021   GO:0003723   GO:0003676   GO:0046872   GO:0004803   GO:0006313  

PANTHER

PTHR17602   PTHR13288   PTHR45951:SF3  

Length:

986

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00798999999999998

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00034

outside

1  -  986

 

 

Pi

209.982689

Theta

24.166389

Tajima's D

4.022238

CLR

1.195513

CSRT

0.998850057497125

Interpretation

Uncertain