Silkworm Genome Informatics Database

Gene

KWMTBOMO10469 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006999

Annotation

PREDICTED:_small_subunit_processome_component_20_homolog_[Bombyx_mori]

Location

Bomo_Chr17(-):11969966-11972086 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.843

CDS

ATGGTGGGCGGCCTGGAGGCGGATGACGTCACGGGCGTACTAGATGTGCTGCTGCCGCCGCTAGTTCGCGAGCTGTCCACCGGCGACGCGGCGGCGCCAGCGTCGATACCCAAACAACTCGCCCGACGACTCGCCCGGAAGATCAGAAGGAAAATAGGAGAGATTGAGTACAGCAAGCTAGCAGCCGAGGCGCAGACTAGGCTCAACATTAAAAGGGCCGAAAGGAAAAAGTTATTACTACAAGAGAAAGTCAAAGATCCGGAGAGGGCGGCCAAAAGGAAAGTCCACGTGAAAGAAAAGAAGAAACAAGCGAAAAAGATAAAGTTAGACATGGTCCACGGAAAGAGACCGCGCCCCAAGAAACGGAAAGCAGAAGATTTTGATCTAGAAGACGAATTACTAAAAGATGAAGGATAG

Protein

MVGGLEADDVTGVLDVLLPPLVRELSTGDAAAPASIPKQLARRLARKIRRKIGEIEYSKLAAEAQTRLNIKRAERKKLLLQEKVKDPERAAKRKVHVKEKKKQAKKIKLDMVHGKRPRPKKRKAEDFDLEDELLKDEG

Uniprot

H9JBV4 A0A2H1VIS5 A0A194PI36 A0A194QTI1 S4PWR8 A0A1E1WAT0 + More
A0A3S2M5S4 A0A212ETX1 A0A0L7L7D7 A0A0M8ZRE0 A0A1B0C082 A0A1A9XBA3 D7EJF6 A0A195CXG7 A0A1B0GMS5

Pubmed

19121390 26354079 23622113 22118469 26227816 18362917 + More
19820115

EMBL

BABH01014932 ODYU01002794 SOQ40735.1 KQ459603 KPI93081.1 KQ461137 + More
KPJ08833.1 GAIX01006313 JAA86247.1 GDQN01006952 JAT84102.1 RSAL01000031 RVE51620.1 AGBW02012517 OWR44952.1 JTDY01002441 KOB71417.1 KQ435891 KOX69407.1 JXJN01023495 DS497704 EFA12725.1 KQ977141 KYN05358.1 AJVK01012254

Proteomes

UP000005204 UP000053268 UP000053240 UP000283053 UP000007151 UP000037510 + More
UP000053105 UP000092460 UP000092443 UP000007266 UP000078542 UP000092462

PRIDE

H9JBV4

Pfam

PF07539   DRIM        + More
PF07859   Abhydrolase_3
PF06350   HSL_N

Interpro

IPR011989   ARM-like        + More
IPR011430   DRIM
IPR016024   ARM-type_fold
IPR029058   AB_hydrolase
IPR013094   AB_hydrolase_3
IPR010468   HSL_N

SUPFAM

SSF48371 SSF48371 + More
SSF53474 SSF53474

Gene 3D

1.25.10.10 3.40.50.1820

ProteinModelPortal

H9JBV4 A0A2H1VIS5 A0A194PI36 A0A194QTI1 S4PWR8 A0A1E1WAT0 + More
A0A3S2M5S4 A0A212ETX1 A0A0L7L7D7 A0A0M8ZRE0 A0A1B0C082 A0A1A9XBA3 D7EJF6 A0A195CXG7 A0A1B0GMS5

KEGG

101745495 K14772 U3 small nucleolar RNA-associated protein 20 | (RefSeq) small subunit processome component 20

GO

GO:0008203 GO:0016298 GO:0016042 GO:0032040 GO:0005730 GO:0030686

Length:

138

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00213

Exp number, first 60 AAs:

0.00213

Total prob of N-in:

0.05700

outside

1 - 138

Pi

158.753453

Theta

139.10006

Tajima's D

0.694438

CLR

0

CSRT

0.575971201439928

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics