SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10466
Pre Gene Modal
BGIBMGA007100
Annotation
PREDICTED:_prostaglandin_reductase_1-like_[Papilio_xuthus]
Location in the cell
Cytoplasmic   Reliability : 2.483
 

Sequence

CDS
ATGACGAAGGCACGTAAATACGTTGTTAACAAATTCTTTGAGGGCGTACCGAAGCGGGAGGATTTCGACATTGTAGAGTACGATCTTCCACCAGTGGGAAACGGTGACATATTAGTGAAAACGGAATGGATCAGCGTAGACCCTTACCAGCGAGCCTACAATTCACATCAAAAGCTGCCTTACGACACGTTCGGTTTCCAAGTTGGCGTCGTGGAGGATTCAAAAAATCCAAAGTTTCCCGTTGGCACCAGGGTAGTATCGCACAAAGGCTGGTGTGACTATTACGTGTTTAATAACACCAATAATTCCGGCGACGGATTTCTTAATACATTTGATCGAGTTTACAAGCTACCCAACTTAAAAGGTTTGTCACATTCTCTGGGAATTGGAGCCGTGGGTATGCCGGGTGCCACAGCCTACTTCGGATTCTTGGATATTTGCAAACCGAAGCCAGGCGAGACAGTAGTTGTGACGGGAGCGGCAGGCGCTGTTGGTTCTCTCGTCGGTCAGATAGCAAAGATTAAGGGGTGCACAGTTATCGGTTTTGCCGGTTCGGATGACAAAGTTAAATGGCTGGAAGAGGAACTCGGCTTCGATAAAGCGTTAAATTACAAGACGGTCGACGTATCTTTAGCGCTTAAAGAATCCGCACCAAATGGCATCGACTGTTATTACGATAATGTCGGTGGCGAAATAAGCAGCCAAATAATGAGCCAGATGAACGATTTTGGCAGAGTTGCTATATGCGGCAGTATCAGCTCTTACAATGAAAACTTGAACAACTCGCCAAAAGCTAGTATCATTCAACCATCTGTGGTGTTTAAGCAACTGAAAATAGAAGGGTTTATTGTTTCGCGGTGGTTGGAGCATTGGTCGGAAGCATTCTCCAACCTAACCGAATGGATCCTCAGTGGAAAATTGAAAGTAAGAGAACATACTACAGAAGGTTTTGACAATATCTACGACGCATTTGTTGGTATGTTAGCCGGTGAGAATTATGGTAAAGCTGTTGTCAAAGTATAA
Protein
MTKARKYVVNKFFEGVPKREDFDIVEYDLPPVGNGDILVKTEWISVDPYQRAYNSHQKLPYDTFGFQVGVVEDSKNPKFPVGTRVVSHKGWCDYYVFNNTNNSGDGFLNTFDRVYKLPNLKGLSHSLGIGAVGMPGATAYFGFLDICKPKPGETVVVTGAAGAVGSLVGQIAKIKGCTVIGFAGSDDKVKWLEEELGFDKALNYKTVDVSLALKESAPNGIDCYYDNVGGEISSQIMSQMNDFGRVAICGSISSYNENLNNSPKASIIQPSVVFKQLKIEGFIVSRWLEHWSEAFSNLTEWILSGKLKVREHTTEGFDNIYDAFVGMLAGENYGKAVVKV

Summary

EMBL
BABH01014929    KQ459603    KPI93076.1    KQ461137    KPJ08829.1    JTDY01010417    + More
KOB58214.1    AK405232    BAM20599.1    AGBW02014376    OWR41771.1    DQ443338    ABF51427.1    JTDY01003120    KOB70117.1    KP899554    AKQ06153.1    GEYN01000023    JAV02106.1    GEYN01000025    JAV02104.1    NWSH01003541    PCG66134.1    KC007342    AGQ45607.1    KP237874    AKD01727.1    KP237886    AKD01739.1    KPI93078.1    KPJ08830.1    AGBW02011637    OWR46367.1    KPI93077.1    PCG66132.1    PCG66135.1    NWSH01003564    PCG66104.1    ODYU01002912    SOQ40998.1    PCG66105.1    EZ407138    ACX53701.1    PCG66133.1    NNAY01001646    OXU23328.1    NEVH01002552    PNF42096.1    GBYB01000237    JAG70004.1    KK107446    EZA50798.1    AGBW02000285    OWR55798.1    KQ982351    KYQ57275.1    LC017750    BAR64764.1    KQ414706    KOC63074.1    KQ459595    KPI95625.1    KYQ57274.1    KQ461154    KPJ08550.1    KQ981208    KYN44744.1    GDIQ01265642    JAJ86082.1    GDIP01220647    GDIP01062315    JAM41400.1    KK852415    KDR24385.1    GL732526    EFX88216.1    KP237896    AKD01749.1    KQ976738    KYM75864.1    KF960800    AII22002.1    GDIP01255092    JAI68309.1    GDIQ01096505    GDIP01111355    GDIP01043199    GDIQ01054177    LRGB01000190    JAL55221.1    JAL92359.1    KZS20464.1    GDIP01183042    JAJ40360.1    KQ977372    KYN03267.1    GDIQ01170510    JAK81215.1    ADTU01021185    ADTU01021186    GDIP01079654    JAM24061.1    GDIQ01187424    GDIP01140398    JAK64301.1    JAL63316.1    GDIQ01110399    JAL41327.1    KP899553    AKQ06152.1    KQ981037    KYN10151.1    GDIQ01269885    JAJ81839.1    GDIQ01236708    JAK15017.1    GDIQ01138237    JAL13489.1    KK852493    KDR22751.1    GDIP01253621    JAI69780.1    GDIP01184449    JAJ38953.1    BT126738    AEE61700.1    APGK01045490    KB741037    KB632085    ENN74606.1    ERL88639.1    BT126534    AEE61498.1    UFQS01002035    UFQT01002035    SSX13033.1    SSX32473.1    GL732609    EFX71508.1    AAZX01013836    GDIP01049065    JAM54650.1    GBYB01007656    JAG77423.1    GDIP01109651    JAL94063.1    KZ288220    PBC32143.1    GALX01002716    JAB65750.1    GDIP01240844    LRGB01001361    JAI82557.1    KZS12747.1    GDIP01086512    JAM17203.1    GDIP01137302    JAL66412.1    GDIP01062314    JAM41401.1    GDIQ01028521    JAN66216.1    NEVH01015823    PNF26620.1    RSAL01000041    RVE50877.1    ODYU01002578    SOQ40267.1    GDIP01027804    JAM75911.1    GGMS01016030    MBY85233.1    KYN03268.1    PNF26623.1    KQ435878    KOX69991.1    NWSH01000966    PCG73369.1    Y19102    CAC38761.1    AAZX01001296    GECZ01021917    GECZ01001753    GECZ01001434    JAS47852.1    JAS68016.1    JAS68335.1    GDIQ01250759    JAK00966.1    GDAI01001023    JAI16580.1    UFQS01001180    UFQT01001180    SSX09563.1    SSX29364.1    GALX01003076    JAB65390.1    KQ979685    KYN19823.1   
Pfam
PF16884   ADH_N_2        + More
PF00107   ADH_zinc_N
PF01035   DNA_binding_1
PF02870   Methyltransf_1N
Interpro
IPR041694   ADH_N_2        + More
IPR036291   NAD(P)-bd_dom_sf       
IPR011032   GroES-like_sf       
IPR013149   ADH_C       
IPR014190   PTGR1       
IPR020843   PKS_ER       
IPR036388   WH-like_DNA-bd_sf       
IPR001497   MethylDNA_cys_MeTrfase_AS       
IPR014048   MethylDNA_cys_MeTrfase_DNA-bd       
IPR036631   MGMT_N_sf       
IPR008332   MethylG_MeTrfase_N       
IPR036217   MethylDNA_cys_MeTrfase_DNAb       
SUPFAM
SSF50129   SSF50129        + More
SSF51735   SSF51735       
SSF46767   SSF46767       
SSF53155   SSF53155       
Gene 3D
PDB
2DM6     E-value=4.80973e-76,     Score=723

Ontologies

Topology

Length:
340
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
20.1886
Exp number, first 60 AAs:
0
Total prob of N-in:
0.71285
outside
1  -  340
 
 

Population Genetic Test Statistics

Pi
166.687089
Theta
167.361538
Tajima's D
-0.21872
CLR
15.182231
CSRT
0.307884605769711
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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