Silkworm Genome Informatics Database

Gene

KWMTBOMO10446 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007009

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_voltage-dependent_T-type_calcium_channel_subunit_alpha-1G_[Bombyx_mori]

Location

Bomo_Chr17(-):11205630-11248491 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 3.519

CDS

ATGCTAGTTATCCTGCTGAACTGCGTGACCCTTGGGATGTACCAGCCTTGTGTCGACGATCAATGCGTCACAAACAGATGTAAAATATTACAGGTGTTCGACGATATAATTTTCGCGTTTTTCACACTGGAGATGACAATCAAGATGGTCGCGATGGGCGTGTACGGACACAGCACGTATCTCGCCGACTCCTGGAATCGACTCGACTGTTTTATAGTAATGGCAGGAGCATTGGAGTACGCACTGAACGTGGAGAACATAAACTTATCAGCGATCAGGACTATAAGGGTGCTCCGACCACTAAGAGCCATCAACAGGATACCGAGCATGCGGATTCTGGTAATGCTGCTCCTTGACACACTTCCGATGCTCGGGAATGTTCTATTACTCTGTTTCTTCGTATTTTTTATATTCGGAATAGTCGGTGTCCAGCTGTGGGAAGGAATATTAAGGCAGCGCTGTGAACTCGTTTTACCGACCAACGTACTCAGACCTAACATTTCGTTTTACTACGAGTTCTCTAAAGAGCTGGATTACATTTGCACGACACCAGAGGATAGCGGAATGCACCAGTGCGGAGACTTTCCTCCCTACAGATACGGACCTTTAGTATGTAATGAGACGGCCAAGCCTTTCTCATATAATAGACCTTCTAACGCTTCCTGTGTAAACTGGAATCAGTATTACACTAATTGTACTCAGAGAGGAGCCAATCCATTCCAAGGGACTATTTCCTTTGATAACATCGGACTTGCGTGGGTCGCTATTTTCTTGGTCATTTCTTTGGAAGGTTGGACAGATATAATGTATTACGTACAAGACGCTCACAGTTTCTGGGATTGGATTTATTTCGTGCTCCTCATCGTGATTGGGTCATTCTTTATGATCAACCTTTGCCTGGTCGTGATCGCGACACAGTTCAGTGAAACAAAGAAACGTGAAATGGAACGTATGAGAGCTGAACGAGCACGGTTCACATCGTCCTCGACCCTCGCTTCGTCTACCAACAACAGCGAACCGGCGACTTGTTACGCGGAAATCGTGAAATACGTTGCGCATCTGTGGAGGCGATTCAAAAGACGAATGATGAAAAAAATAAGGGTATATCGATATCAACGCGCTCAGCTCCGATGGAGAACAAGTCGGGAGACACTACAATTGCCATCGAACAAAACAAGACAGCATCACCCTTGCTGTCCACGAGTGCATCCACAGGGTAACGGTAAGGGTGTTGAAGAGGGTGGCGAGGAGCCCCTGAGTCGACCCAGTCTGTTGCGCGTCCCTTCACTATCCGCAGCCGATCTTGAGAACGCTTCAAATCTCTCGCTGTTGTCACCTCCATCGCTAATAAGAAGAAGATCGTCGGTGATGTTTAGCGACACAGTGTTACTGCACACGCCGAACGCGCAGCACGTGGCTCATCCGCATAACGTATGCTCTTCCGAGAAGATGACTCAAACAGAATTTGACCTGCCAGCAGGAGACACAGCTGAAGAACGAGCAGCTGCAGGTGGTACTATGTCCTGCCAAGAACTACTTGCTTTGTCTGGAGCATTGTCAGCTGCTTTACCTACTGGACAAGTAGCACTGGATTCCTTCTTCGAAGAACTTACAAAGGGAATCAGTAAGAGGGCCGGTGAAGATAAAGCAGACACTAAAACTATAGAAATTGAAGACTTTTCTTGCTGTGTTGATCTATTGATGGCCGAAGCTGCAGCTAAGGAAACTAGAAAAGGCAGATTGAGAAACGCATGCTGCAAGTTCTGGAAAAGTTTTTCCAATTTTTTTTCTGATAAACGAAAACGTATAAAGGAAATTGCCGATCATAAATACTTTCAACAAGGTATTCTGTTAGCTATACTGATCAATACGCTATCAATGGGCATTGAGTACCACAATCAACCCGAGGAGCTCACTGTAATAGTCGAGATCAGTAACGTTGTGTTCTCGGCCATATTCGCTATAGAAATGGTTTTCAAGATCATTTCTGAAGGCCCTTTTAAATATATCTCCAACGGATTCAACGTATTCGATGGGATAATTGTAATTCTCAGTGCGTTCGAGCTAGCACAGAGCTACGGTAACGAAAAGGACTTGGCAGGAAGTTCTGGTCTTTCGGTGCTTCGGACATTTCGACTCTTGCGTATATTAAAACTGGTACGCTTCATGCCGAACTTGAGGCGACAGCTTTTTGTAATGCTGAGGACAATGGACAACGTTGCAGTATTTTTCTCCTTGCTTGTTCTATTCATCTTTATATTCAGCATCCTCGGTATGAACCTCTTCGGGTGCAAATTCTGCGAGAAAGACCAGCATGGCGAACAAGTGTGCGACCGAAAAAACTTTGATACGCTCTTGTGGGCCTTTGTCACGGTGTTTCAGGTATTAACTCAAGAAGACTGGAACGTTGTACTGTTCAACGGAATGGAGAAAACAAGTCACTGGGCCGCTTTATATTTCGTTGCACTTATGACTTTCGGGAATTACGTACTGTTTAATTTATTGGTAGCTATACTGGTTGAAGGATTCAGTTCGGAGCGAAATGAGAGAAGGGAACGTGAGCAACGCGAACTAGCAAAGTCTAAATTATCAAGTGAATGTTTCTCTGAAAACAATGAGTTACAATACGATGAGTCTAATTCGGCATCGCATTCCAGCGATAGTTTCTCCCAGAATGAAATAAAGAACTATTGGAGGTCCGCCGATGACGTTAGAAAAGCCAAAGACGACGTAAACGGCCACAAGGATAAAGCGATGAAAACTAAACGTAAATCTAAATCTTCACACCATCCGACCCTGTGCAAGGACTGCGCCCAATCAAACAAATGCAATATACAAAAGGAATCAAAGATGCTAGCAAGCAATGCAGGAGTAGCTGAATCCGCAGCAGTTCCAATGATAACCCACACTGCAGCTACACCACAAGACTCACCGTCAACAACCTTGGAACCGGGAGCTTCGTTTAGAGATTTCAATATGACTTTGAGTCTGGAGCGATCATCCATGCTCTCTAGTTTAGATTCAATCGATCGAACATCTTGCGCAAGTATTCCCGGACTACTCAAACCACCGAATAGCTACACGCTCACACTCCATTCAGCTCAGGCTCAACTCGGTGCTGAGAAAGCAAGACTTCCTCCGTTAACACTGGCGCCTCCTCCATTAACCCTCGCTCTTCCACCGCTCCGGACCTCTTCACCGAGTCCCACAACTCCAACCACACCAAAATCAATGCCGTCTCCAGTGTTACCAGAAAAAAATCTACAGGTCACAATAGCCAAAGACGAGAATTGCTTGACCACGAGTGACAAATCTAGTCTACTGAGTTCACAAAAGAATATAAGTATAGTTAGTACTACAGCCAACGGTGAGGACAAATGCAGAGTACAAAGAGGATATAGCTGGCGTCTTTCCAAACCAAGTCTGAGAAGGAAACCGAAACAGAGGACCGGATCTGATTCAGATGCGATTGTCTTGAACAATGGGAGAGACCACGCTGTTTGTAACGGATCAGGTCTTAGGAAGAACGAGCTGCTTCTGTCGTCATCGATAGTGATCAAGAACGACACCCAGTCGGAATACCCAAACAACCGATCTCGTTCACAACTTCCCGCGCCCAGAGTATTATCTGCACCAGCCATGAAAGTATCTGCGCAAAACGCTCCCTTATTACCTGATGTTTCATGGAAGGCTCCGGAAGCAGGCTTTTCCTCGGATTCGACTGTACGACTTGACGCGGTTAAACCACACCGACTATCACTAACCAATGACTACATAACCGTAACAACAGTGTCGGAAGTGAAATCTAGCAACTTGACTCCGCCTCCTGCGACAATATCCCGAGTTCCGTCGTTACCGCGGACTCCGAGGAACGAAGTATCCACGCTACCGACAAGACCTAATAATCAACCCCTTCCACTCATTAAGCAGATTAATGAAGAGGTAACGATAAGCAACAACGTGTGTATCTTTTCATCACGTTTCGACAGAAGACAATTCAGGTTCAAAGATCTCTTCCGGTTCATGGAGCCAACTGGATGCCTCAAAGAGAAAGAACATTACTCTCTTTATATTTTCGCTCCGGAAAACAAAATGAGACGTTTTTGCGTATGGATAGTGACCCGAAGTTGGTTTGACAATATCGTCTTACTGTTTATCGCATTAAACTGCATCACACTTGCAATGGAACGCCCGAACATACCGCCTGATTCTAAAGAGAGACAGTTTTTATCAAGTGCCAATTACGTATTCACTGCTGTTTTCGCTATTGAAATGTTCATCAAGGTGGTTGCATCAGGAATGTTTTATGGGCACGAAGCATATTTCACATCAGGATGGAACATAATGGACGGTTCGTTAGTGATCATATCAATCATTGATTTATTAATGTCATTAGTATCAGAATCAAGTCCACGGATTTTCGGAATTCTCAGGGTATTCAGATTACTCCGTTCTTTAAGGCCGTTAAGGGTAATCAACAGAGCTCCCGGCTTGAAGCTGGTGGTTCAAACGCTACTTTCGTCTTTAAGACCCATCGGAAACATCGTGTTGATTTGTTGCACGTTTTTCATAATATTCGGTATTTTAGGAGTCCAGCTGTTCAAAGGAGCGTTCTTCTATTGCGAAGGCGCGAATATAAAGAACGTTAAGAACAAAACCGACTGTCTGGCCATTGAAGGAAATGTGTGGGTCAATAGGAAGTACAATTTCGATGATCTTGGCAAAGCTTTGATGTCATTGTTCGTATTGAGCTCAAGGGACGGTTGGGTGAACATAATGTATACTGGCCTTGACGCTGTTGGTGTTGATCAACAGCCAATAGTAAACTACTCGGAATGGCGTCTCCTCTACTTCATTGCATTTATACTCTTAGTCGGATTCTTCGTTTTGAACATGTTCGTGGGGGTTGTGGTAGAGAACTTCCACAGATGTAGAGAGGAACAAGAAAAAGAAGAACGTGTTAGGAGAGCCGCCAAACGAGCTCTGCAGATGGAAAAGAAAAGACGAAAAATGCATCAAAGACCATATTATGCAGACTATTCTCAAACACGACTGTTTGTTCACAATGTTGTGACTTCAAAATACTTCGATTTAGCCATTGCTGGTGTGATTGGTCTTAACGTAGTCACAATGGCTATAGAGTACTACAAAATGCCGCCGGCATTGCAATACGCTTTGAAGATATTCAATTATTTTTTCACTGCTGTCTTCATATTAGAAGCAGTAATGAAACTCGTTGCGCTGGGATTTAAAATATATCTAAAAGACAAATGGAACCAATTGGACGTGATAATCGTAATATTGTCAATTGTCGGTATAGTTTTAGAAGAATTAGAGACGAATATAATTCCAATAAATCCTACTATAATGAGAGTTATGCGAGTTTTGAGGATCGCAAGAGTTTTGAAGTTATTGAAGATGGCGAAGGGTATTAGGGCCCTTCTAGATACAGTAATGCAAGCGTTACCGCAAGTTGGAAACCTGGGCCTGTTGTTTTTTCTGCTGTTCTTCATATTTGCGGCACTGGGAGTAGAACTATTTGGCAGACTAGAATGTTCCGATGAAATACCGTGCCAAGGTCTTGGAGAACATGCCCACTTTGCCAATTTTGGAATGGCATTTTTAACATTATTCCGTGTAGCGACGGGCGATAACTGGAATGGTATAATGAAAGATACTCTGCGGGAAGATTGCGACAGTTCAGTGGACTGCGTTCGCAACTGCTGCGTGTCTACAATAATCGCACCTATATTTTTCGTAGTATTCGTGCTTATGGCACAGTTTGTACTCGTCAACGTTGTCGTGGCTGTCCTAATGAAACACCTAGAAGAATCCCACAAACAAATGGAAGATGAAATCGACATGGACGTTGAGCTCGAGCGCGAATTGGAACGGGAAGCCGACGACGAAGAAGACCGAGCGCTGTGCCGAGCCCTAGAGGAATGTGTATCCCCACCACGGCCACTGAACAAGGTACCATCCCTTCCCGCAAACTTTACATACAGCGAGCCGAAGCAGCCGCTGCCGTCACCGGCCCGACGCCGCCGCACGATGCACTCGCACCACGCGCTCCTCCCCGGCCTCTCCCCTACTGGGCTCCCCCCGCGCCGAGCCTCCCTCTCGCCACACGCCTTCGGGCGCCGCCGACAGGACTCTGCATCTGAGCCACCTGCCGCCCTCTACGAAGAAGACGCTAGATTCATCGACGCTGACGACATCGAAGAATTAGAGCCCGGTAGCCCTCCGAGACGAGACTCCTTTGCCCAAAATCGAAGGCAGAGGGTTGACAAACGAAACTCTCTTCGCGGAGAAGAAGCCAGACTTTTGCGACCCGCGCTTTTGTCCGTTCCTACTACACGGCAGAGCGTCCGACTCAGCGGACCCAAACGAAGGTCATCAACAGAGTCTGCCGTCGCGTGTACTTCATTGCGATCTCCCAACCAACAGAACCAAGCGGTTCCCGAAGCTATCGACCGACTTATAAGCGAGGAGGAAAAGATACGTATAGTGATCGCGGAGAGGCGGAAGATCGACACGGGACGGCCCGACGTGGAGGAAGCAGTCGAACTGTCAGAGCGTGGTTCTTAG

Protein

MLVILLNCVTLGMYQPCVDDQCVTNRCKILQVFDDIIFAFFTLEMTIKMVAMGVYGHSTYLADSWNRLDCFIVMAGALEYALNVENINLSAIRTIRVLRPLRAINRIPSMRILVMLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWEGILRQRCELVLPTNVLRPNISFYYEFSKELDYICTTPEDSGMHQCGDFPPYRYGPLVCNETAKPFSYNRPSNASCVNWNQYYTNCTQRGANPFQGTISFDNIGLAWVAIFLVISLEGWTDIMYYVQDAHSFWDWIYFVLLIVIGSFFMINLCLVVIATQFSETKKREMERMRAERARFTSSSTLASSTNNSEPATCYAEIVKYVAHLWRRFKRRMMKKIRVYRYQRAQLRWRTSRETLQLPSNKTRQHHPCCPRVHPQGNGKGVEEGGEEPLSRPSLLRVPSLSAADLENASNLSLLSPPSLIRRRSSVMFSDTVLLHTPNAQHVAHPHNVCSSEKMTQTEFDLPAGDTAEERAAAGGTMSCQELLALSGALSAALPTGQVALDSFFEELTKGISKRAGEDKADTKTIEIEDFSCCVDLLMAEAAAKETRKGRLRNACCKFWKSFSNFFSDKRKRIKEIADHKYFQQGILLAILINTLSMGIEYHNQPEELTVIVEISNVVFSAIFAIEMVFKIISEGPFKYISNGFNVFDGIIVILSAFELAQSYGNEKDLAGSSGLSVLRTFRLLRILKLVRFMPNLRRQLFVMLRTMDNVAVFFSLLVLFIFIFSILGMNLFGCKFCEKDQHGEQVCDRKNFDTLLWAFVTVFQVLTQEDWNVVLFNGMEKTSHWAALYFVALMTFGNYVLFNLLVAILVEGFSSERNERREREQRELAKSKLSSECFSENNELQYDESNSASHSSDSFSQNEIKNYWRSADDVRKAKDDVNGHKDKAMKTKRKSKSSHHPTLCKDCAQSNKCNIQKESKMLASNAGVAESAAVPMITHTAATPQDSPSTTLEPGASFRDFNMTLSLERSSMLSSLDSIDRTSCASIPGLLKPPNSYTLTLHSAQAQLGAEKARLPPLTLAPPPLTLALPPLRTSSPSPTTPTTPKSMPSPVLPEKNLQVTIAKDENCLTTSDKSSLLSSQKNISIVSTTANGEDKCRVQRGYSWRLSKPSLRRKPKQRTGSDSDAIVLNNGRDHAVCNGSGLRKNELLLSSSIVIKNDTQSEYPNNRSRSQLPAPRVLSAPAMKVSAQNAPLLPDVSWKAPEAGFSSDSTVRLDAVKPHRLSLTNDYITVTTVSEVKSSNLTPPPATISRVPSLPRTPRNEVSTLPTRPNNQPLPLIKQINEEVTISNNVCIFSSRFDRRQFRFKDLFRFMEPTGCLKEKEHYSLYIFAPENKMRRFCVWIVTRSWFDNIVLLFIALNCITLAMERPNIPPDSKERQFLSSANYVFTAVFAIEMFIKVVASGMFYGHEAYFTSGWNIMDGSLVIISIIDLLMSLVSESSPRIFGILRVFRLLRSLRPLRVINRAPGLKLVVQTLLSSLRPIGNIVLICCTFFIIFGILGVQLFKGAFFYCEGANIKNVKNKTDCLAIEGNVWVNRKYNFDDLGKALMSLFVLSSRDGWVNIMYTGLDAVGVDQQPIVNYSEWRLLYFIAFILLVGFFVLNMFVGVVVENFHRCREEQEKEERVRRAAKRALQMEKKRRKMHQRPYYADYSQTRLFVHNVVTSKYFDLAIAGVIGLNVVTMAIEYYKMPPALQYALKIFNYFFTAVFILEAVMKLVALGFKIYLKDKWNQLDVIIVILSIVGIVLEELETNIIPINPTIMRVMRVLRIARVLKLLKMAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDEIPCQGLGEHAHFANFGMAFLTLFRVATGDNWNGIMKDTLREDCDSSVDCVRNCCVSTIIAPIFFVVFVLMAQFVLVNVVVAVLMKHLEESHKQMEDEIDMDVELERELEREADDEEDRALCRALEECVSPPRPLNKVPSLPANFTYSEPKQPLPSPARRRRTMHSHHALLPGLSPTGLPPRRASLSPHAFGRRRQDSASEPPAALYEEDARFIDADDIEELEPGSPPRRDSFAQNRRQRVDKRNSLRGEEARLLRPALLSVPTTRQSVRLSGPKRRSSTESAVACTSLRSPNQQNQAVPEAIDRLISEEEKIRIVIAERRKIDTGRPDVEEAVELSERGS

Uniprot

A0A212EGN3 A0A3S2NXP4 A0A194PIB3 A0A2H1VQE8

Pubmed

22118469 26354079

EMBL

AGBW02015057 OWR40647.1 RSAL01000031 RVE51646.1 KQ459603 KPI93057.1 + More
ODYU01003818 SOQ43049.1

Proteomes

UP000007151 UP000283053 UP000053268

Pfam

PF00520 Ion_trans

Interpro

IPR027359   Volt_channel_dom_sf        + More
IPR005445   VDCC_T_a1
IPR005821   Ion_trans_dom

Gene 3D

1.20.120.350

ProteinModelPortal

A0A212EGN3 A0A3S2NXP4 A0A194PIB3 A0A2H1VQE8

PDB

6J8J E-value=2.58655e-72, Score=699

KEGG

101744910 K04854 voltage-dependent calcium channel T type alpha-1G | (RefSeq) voltage-dependent T-type calcium

GO

GO:0005245 GO:0005891 GO:0016021 GO:0005216 GO:0006811 GO:0016020 GO:0004674 GO:0006418 GO:0003723 GO:0046872 GO:0003824 GO:0070588 GO:0055085

Length:

2195

Number of predicted TMHs:

19

Exp number of AAs in TMHs:

418.37275

Exp number, first 60 AAs:

17.71519

Total prob of N-in:

0.79594

POSSIBLE N-term signal

sequence

inside

1 - 35

TMhelix

36 - 58

outside

59 - 120

TMhelix

121 - 143

inside

144 - 248

TMhelix

249 - 271

outside

272 - 280

TMhelix

281 - 303

inside

304 - 610

TMhelix

611 - 630

outside

631 - 639

TMhelix

640 - 662

inside

663 - 668

TMhelix

669 - 691

outside

692 - 739

TMhelix

740 - 762

inside

763 - 817

TMhelix

818 - 840

outside

841 - 1370

TMhelix

1371 - 1393

inside

1394 - 1413

TMhelix

1414 - 1436

outside

1437 - 1445

TMhelix

1446 - 1468

inside

1469 - 1511

TMhelix

1512 - 1534

outside

1535 - 1615

TMhelix

1616 - 1638

inside

1639 - 1690

TMhelix

1691 - 1713

outside

1714 - 1727

TMhelix

1728 - 1750

inside

1751 - 1762

TMhelix

1763 - 1785

outside

1786 - 1824

TMhelix

1825 - 1847

inside

1848 - 1916

TMhelix

1917 - 1939

outside

1940 - 2195

Pi

220.359974

Theta

185.554726

Tajima's D

-2.201206

CLR

121.625458

CSRT

0.00499975001249937

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics