Gene

KWMTBOMO10442

Pre Gene Modal

BGIBMGA007010

Annotation

PREDICTED:_charged_multivesicular_body_protein_6-A_[Papilio_machaon]

Location

Bomo_Chr17(-):11111508-11116198      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.036 Nuclear   Reliability : 1.661

CDS

ATGGGTGCTTTATTCGGTAAACATAAAAAAGTAGTGAGTAGAGTTACCGAGCAAGATAAGGCAGTACTTCAACTAAAACAACAGCGAGATAAGCTGAAACAATATCAGAAAAAAATTGAATTAAACCTAGAAAAAGACAGAAAATTAGCTAAGAAATTACTAGAAGAAGGTAAGCGTGACAGGGCAAAACTTTTATTGAAGAAGAAGAAATATCAGGAGAATCTTCTACATAATACAGATACGCAGCTGGAGAAATTAGAACAGCTAACTCATGATTTGGAATTTGCACAAATTGAAATTCAGGTACTTGATGGACTAAAGACAGGTAATGTGGCACTGAAGAAGGTACATGATATACTGAACATTGATGAAATAGAAAAAATAATGGAAGAATCCAGAGAAGGTATAGACAAACAAAGAGAAATTGATGAACTAATTTCTGGACAACTCACAGAGGAAGATGAAGAGGCTGTAGAAGCTGAACTTGAAGCTATTCTTGATATTCAAGATGAATTACCGGATGTACCAACTGATAACCTGCCTGAAATTAGTGAACAAAAAACAAAAACAAAACCTCTGAAAACCAAAGAGAGTCCAACAAAAATTGCTGTGGAAGCCTAA

Protein

MGALFGKHKKVVSRVTEQDKAVLQLKQQRDKLKQYQKKIELNLEKDRKLAKKLLEEGKRDRAKLLLKKKKYQENLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGIDKQREIDELISGQLTEEDEEAVEAELEAILDIQDELPDVPTDNLPEISEQKTKTKPLKTKESPTKIAVEA

Uniprot

H9JBW5   A0A0L7LG14   S4PPS8   A0A194QUZ9   A0A1E1W6E2   A0A194PJ30   + More
A0A2H1X2T1   A0A1V0JHU8   A0A212ERD5   A0A0L0BM13   A0A1L8EDT5   A0A1L8EC54   A0A1I8NM59   T1J1H5   A0A1I8MAN6   A0A1W4VD33   A0A1L8DFL0   B4N5M7   A0A2J7Q371   B3MED3   A0A2P8Y7R3   B4J4H0   A0A0J9RK29   A0A0M3QV98   B4I864   Q9W236   B4P5H4   A0A034VWA9   A0A0C9RA47   E4NKK3   B4QHJ1   A0A0K8TS91   B3NLJ0   B4KTF4   A0A067QZ36   A0A0K8VF17   A0A1Q3FGZ6   A0A1Y9HB40   A0A2G8KZ32   A0A1I8JUH9   A0A336LT83   A0A084WK47   A0A154P6S2   A0A2M4BZ87   A0A2M3ZBQ7   W8BPD9   W5JE86   A0A3B0JNU6   A0A182PLA0   A0A226EQ35   B4LMN8   T1DQP2   A0A2M4BZ86   A0A2M4AMR6   A0A1B6HJA5   A0A2M3ZJ86   A0A1Y9H2Z0   A0A0L7QLS6   A0A1B6DX10   A0A1A9X3V7   A0A1Y1KLQ6   A0A088ABW5   A0A182JVC3   A0A182LWA8   A0A1Y9IWF7   A0A1J1HTC8   Q290H7   A0A1Y9IS73   B4GC16   A0A2C9GTV3   A0A182IIN7   E2A6N5   A0A2A3ES90   A0A2R5LA75   L7M061   A0A1Y9J0I7   Q7Q5S7   A0A293M2E7   A0A224YVK8   A0A131Z890   D6WZ06   A0A023FUR6   A0A131XK71   A0A195BDR8   B0X3V8   A0A1Y9INB2   A0A158NWI7   A0A026W248   A0A023GGD6   A0A240PLI7   G3MPG8   A0A232ET81   A0A195FN33   A0A210QCJ3   A0A3B4AGD9   A0A0P4VUJ6   R4G4K4   A0A023FI32   U5EZK4   E2BUV5  

Pubmed

19121390    26227816    23622113    26354079    22118469    26108605    + More
25315136    17994087    29403074    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    25348373    26369729    24845553    29023486    24438588    24495485    20920257    23761445    28004739    15632085    20966253    20798317    25576852    12364791    14747013    17210077    28797301    26830274    18362917    19820115    28049606    21347285    24508170    30249741    22216098    28648823    28812685    25463417    27129103   

EMBL

BABH01014859    JTDY01001253    KOB74392.1    GAIX01000042    JAA92518.1    KQ461137    + More
KPJ08805.1    GDQN01008511    JAT82543.1    KQ459603    KPI93053.1    ODYU01012995    SOQ59587.1    KY694525    ARD08866.1    AGBW02013074    OWR44014.1    JRES01001657    KNC21091.1    GFDG01001983    JAV16816.1    GFDG01002603    JAV16196.1    JH431785    GFDF01008934    JAV05150.1    CH964154    EDW79666.1    NEVH01019069    PNF23024.1    CH902619    EDV36539.1    PYGN01000827    PSN40299.1    CH916367    EDW01652.1    CM002911    KMY95814.1    CP012524    ALC42003.1    CH480824    EDW56789.1    AE013599    AAF46863.1    AAM71106.2    CM000158    EDW91805.1    GAKP01013149    JAC45803.1    GBYB01013264    JAG83031.1    BT125800    ADR66774.1    CM000362    EDX08220.1    GDAI01000376    JAI17227.1    CH954179    EDV54906.1    CH933808    EDW08515.1    KK853091    KDR11542.1    GDHF01014843    JAI37471.1    GFDL01008272    JAV26773.1    AXCN02000553    MRZV01000294    PIK53259.1    UFQT01000093    SSX19617.1    ATLV01024094    KE525349    KFB50591.1    KQ434827    KZC07523.1    GGFJ01009248    MBW58389.1    GGFM01005192    MBW25943.1    GAMC01007982    JAB98573.1    ADMH02001746    ETN61215.1    OUUW01000001    SPP74331.1    LNIX01000002    OXA59735.1    CH940648    EDW60025.1    GAMD01002349    JAA99241.1    GGFJ01009249    MBW58390.1    GGFK01008750    MBW42071.1    GECU01032922    JAS74784.1    GGFM01007821    MBW28572.1    KQ414909    KOC59572.1    GEDC01007080    JAS30218.1    GEZM01080032    JAV62333.1    AXCM01000856    CVRI01000020    CRK90636.1    CM000071    EAL25385.2    CH479181    EDW32359.1    APCN01000031    GL437166    EFN70904.1    KZ288189    PBC34625.1    GGLE01002254    MBY06380.1    GACK01007792    JAA57242.1    AAAB01008960    EAA11586.4    GFWV01010353    MAA35082.1    GFPF01006726    MAA17872.1    GEDV01002156    JAP86401.1    KQ971363    EFA09032.1    GBBL01001898    JAC25422.1    GEFH01002051    JAP66530.1    KQ976513    KYM82352.1    DS232324    EDS40035.1    ADTU01028059    KK107503    QOIP01000006    EZA49666.1    RLU22068.1    GBBM01002479    JAC32939.1    JO843769    AEO35386.1    NNAY01002311    OXU21565.1    KQ981430    KYN41722.1    NEDP02004182    OWF46476.1    GDKW01000376    JAI56219.1    GAHY01000696    JAA76814.1    GBBK01003688    JAC20794.1    GANO01000633    JAB59238.1    GL450772    EFN80492.1   

Proteomes

UP000005204    UP000037510    UP000053240    UP000053268    UP000007151    UP000037069    + More
UP000095300    UP000095301    UP000192221    UP000007798    UP000235965    UP000007801    UP000245037    UP000001070    UP000092553    UP000001292    UP000000803    UP000002282    UP000000304    UP000008711    UP000009192    UP000027135    UP000075886    UP000230750    UP000075900    UP000030765    UP000076502    UP000000673    UP000268350    UP000075885    UP000198287    UP000008792    UP000075884    UP000053825    UP000091820    UP000005203    UP000075881    UP000075883    UP000075920    UP000183832    UP000001819    UP000075903    UP000008744    UP000075882    UP000075840    UP000000311    UP000242457    UP000076407    UP000007062    UP000007266    UP000078540    UP000002320    UP000075902    UP000005205    UP000053097    UP000279307    UP000075880    UP000215335    UP000078541    UP000242188    UP000261520    UP000008237   

PRIDE

H9JBW5    Q9W236    E4NKK3   

Pfam

PF03357   Snf7

Interpro

IPR005024   Snf7_fam       

ProteinModelPortal

H9JBW5   A0A0L7LG14   S4PPS8   A0A194QUZ9   A0A1E1W6E2   A0A194PJ30   + More
A0A2H1X2T1   A0A1V0JHU8   A0A212ERD5   A0A0L0BM13   A0A1L8EDT5   A0A1L8EC54   A0A1I8NM59   T1J1H5   A0A1I8MAN6   A0A1W4VD33   A0A1L8DFL0   B4N5M7   A0A2J7Q371   B3MED3   A0A2P8Y7R3   B4J4H0   A0A0J9RK29   A0A0M3QV98   B4I864   Q9W236   B4P5H4   A0A034VWA9   A0A0C9RA47   E4NKK3   B4QHJ1   A0A0K8TS91   B3NLJ0   B4KTF4   A0A067QZ36   A0A0K8VF17   A0A1Q3FGZ6   A0A1Y9HB40   A0A2G8KZ32   A0A1I8JUH9   A0A336LT83   A0A084WK47   A0A154P6S2   A0A2M4BZ87   A0A2M3ZBQ7   W8BPD9   W5JE86   A0A3B0JNU6   A0A182PLA0   A0A226EQ35   B4LMN8   T1DQP2   A0A2M4BZ86   A0A2M4AMR6   A0A1B6HJA5   A0A2M3ZJ86   A0A1Y9H2Z0   A0A0L7QLS6   A0A1B6DX10   A0A1A9X3V7   A0A1Y1KLQ6   A0A088ABW5   A0A182JVC3   A0A182LWA8   A0A1Y9IWF7   A0A1J1HTC8   Q290H7   A0A1Y9IS73   B4GC16   A0A2C9GTV3   A0A182IIN7   E2A6N5   A0A2A3ES90   A0A2R5LA75   L7M061   A0A1Y9J0I7   Q7Q5S7   A0A293M2E7   A0A224YVK8   A0A131Z890   D6WZ06   A0A023FUR6   A0A131XK71   A0A195BDR8   B0X3V8   A0A1Y9INB2   A0A158NWI7   A0A026W248   A0A023GGD6   A0A240PLI7   G3MPG8   A0A232ET81   A0A195FN33   A0A210QCJ3   A0A3B4AGD9   A0A0P4VUJ6   R4G4K4   A0A023FI32   U5EZK4   E2BUV5  

PDB

5FD7     E-value=0.00139537,     Score=95

KEGG

101744531    K12195 charged multivesicular body protein 6 | (RefSeq) charged multivesicular body protein 6-A

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0007034   GO:0005623   GO:0032509   GO:0043162   GO:0000815   GO:0046872   GO:0015074   GO:0005524   GO:0006468   GO:0004674   GO:0006418   GO:0003723   GO:0003824  

Length:

206

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06870

outside

1  -  206

 

 

Pi

206.259843

Theta

153.372978

Tajima's D

1.204407

CLR

0

CSRT

0.709714514274286

Interpretation

Uncertain