Silkworm Genome Informatics Database

Gene

KWMTBOMO10441

Pre Gene Modal

BGIBMGA007089

Annotation

PREDICTED:_zinc_finger_protein_569-like_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr17(+):11105479-11107020 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.039

CDS

ATGGATCATTTTCTTTTATGCAGGTCGCACAGTTGCGGCGAACGACCTTTCAGCTGTGGTGAATGTGGCAAATCGTTCCCATTAAAAGGCAATCTACTATTCCACGAACGATCACACAATAAAGCGAATCGAACATTGCGGTGTGAAGTGTGTTCTAAAGACTTCTTATGTAAAGGACACTTGGCGGCTCACAGACGTACACATGAAGAACCTAAAGAAGGGGCGACGAGCACTGATACGCCCGCCGAAACTATAGAATGCACTAGTGAATGCAACCCTAAATTCATTAAAGTCGAAGTAGATCCTGCCGAAAGGAAACATGAAATAAGACCACCACAAGCAGAGAGCAGACCAGCAGACAACAATGTTGCTCAAAATCAACAAACCAACACAAACACCGTTATGCAAATAACTGGCCAAGTGACACAGCAGCAAGTACGTAGCTCGACAAGCTCTCCTGGTGCGACAGCGGCGACGTTCACTCACGCCACAACAACCCAACACCATAGTGGCACAAGCATTGCTCATCACCCCGTCACTGTGAACTACTAG

Protein

MDHFLLCRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKANRTLRCEVCSKDFLCKGHLAAHRRTHEEPKEGATSTDTPAETIECTSECNPKFIKVEVDPAERKHEIRPPQAESRPADNNVAQNQQTNTNTVMQITGQVTQQQVRSSTSSPGATAATFTHATTTQHHSGTSIAHHPVTVNY

Uniprot

H9JC44 S4PQA7 A0A2A4IYQ4 A0A2A4IZN7 A0A2A4IZV4 A0A212ERB0 + More
A0A194PIA9 A0A2H1X2Y2 A0A194QU13 A0A1E1WS31 A0A1E1W290 A0A1E1WV67 A0A1E1W8B5

Pubmed

19121390 23622113 22118469 26354079

EMBL

BABH01014857 BABH01014858 GAIX01001845 JAA90715.1 NWSH01004552 PCG64955.1 + More
PCG64956.1 PCG64958.1 AGBW02013074 OWR44015.1 KQ459603 KPI93052.1 ODYU01012995 SOQ59586.1 KQ461137 KPJ08804.1 GDQN01001219 JAT89835.1 GDQN01009971 JAT81083.1 GDQN01000172 JAT90882.1 GDQN01007855 JAT83199.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000053268 UP000053240

PRIDE

H9JC44

Pfam

PF00096 zf-C2H2

Interpro

IPR036236 Znf_C2H2_sf + More
IPR013087 Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9JC44 S4PQA7 A0A2A4IYQ4 A0A2A4IZN7 A0A2A4IZV4 A0A212ERB0 + More
A0A194PIA9 A0A2H1X2Y2 A0A194QU13 A0A1E1WS31 A0A1E1W290 A0A1E1WV67 A0A1E1W8B5

PDB

5V3G E-value=5.25414e-06, Score=115

KEGG

101744101 no KO assigned | (RefSeq) zinc finger protein 569-like

GO

GO:0003676 GO:0046872 GO:0015074 GO:0005524 GO:0006468 GO:0004674 GO:0006418 GO:0003723 GO:0003824

Length:

183

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00019

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05652

outside

1 - 183

Pi

32.952833

Theta

94.581428

Tajima's D

-1.998107

CLR

0.001341

CSRT

0.0139493025348733

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics