SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10435
Pre Gene Modal
BGIBMGA007014
Annotation
cuticular_protein_RR-1_motif_9_precursor_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.48 Nuclear   Reliability : 2.021
 

Sequence

CDS
ATGGCCACCGTTCTGTTACTATTGACGTCAGTCTTGATAGCTTTAGGGTCATGTGGCCGCCTGGAACCTCAATACCTCCCCCCTCGTCCTGGCGGTGGCAACGGGGGTAACGGAGGGAGCAATACAGGAGGTGGCTTTGGAGGCAGCGGTGGAAGCGGCTCGGGGGGTGGCTTTGGGGGTAGCGGCGGTGGTCATTTCGGGGGTGGCTCAGGAGGGTTTGGTGGCTCCGGTTCCGGAAGTCACGGAAGTTCCAGCGGAGGTGGATCTGGGGGATCAAGTTCTGGAGGTTTTGGAAGCACAAGCAGCGGCGGCAGTGGCCCGCAGATACCGATAGTTAGTTTCGAAAATGTAAATAATGGCGATGGAAGTTATCACTTTAGTTACGAAACCGGTAATGGCATCTCAGCCAAAGAAAGTGGCGCACCTCGTGCTCAAGGCCCTGAAGGTCCAGCCGTGACAGCGGAAGGGGCATTCTCTTACCGCACCCCGGACGGCCAACAAATTTCCATCACCTACACCGCTGACGAGAATGGCTTCCACCCAACTGGCCCTCACCTCCCCACTCCTCCTCCCATCCCAGAAGAGATTCTGCGCTCGATTGAGTTCAACAAGCGTAATCCTTCCTCTGAGGGTTCCTACAATGGCGGAAACGGCAACGGCTCTGGAGGCTCCGGGGGTGCTGGAGGCTACCACTATTGA
Protein
MATVLLLLTSVLIALGSCGRLEPQYLPPRPGGGNGGNGGSNTGGGFGGSGGSGSGGGFGGSGGGHFGGGSGGFGGSGSGSHGSSSGGGSGGSSSGGFGSTSSGGSGPQIPIVSFENVNNGDGSYHFSYETGNGISAKESGAPRAQGPEGPAVTAEGAFSYRTPDGQQISITYTADENGFHPTGPHLPTPPPIPEEILRSIEFNKRNPSSEGSYNGGNGNGSGGSGGAGGYHY

Summary

Uniprot
ProteinModelPortal

Ontologies

Topology

SignalP
Position:   1 - 18,         Likelihood:  0.997264
 
 
Length:
232
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.33848
Exp number, first 60 AAs:
0.33681
Total prob of N-in:
0.02683
outside
1  -  232
 
 

Population Genetic Test Statistics

Pi
194.686526
Theta
156.887397
Tajima's D
1.308721
CLR
0.003087
CSRT
0.741112944352782
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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