Gene

KWMTBOMO10427

Pre Gene Modal

BGIBMGA007019

Annotation

putative_mitochondrial_ribosomal_protein_[Bombyx_mori]

Location

Bomo_Chr17(-):10717457-10720603      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.999

CDS

ATGGCCAGTAGCAGATTGGAAAGAATTGGTACAATATTTACCAGAGTTGAAGGTCTTCTTAGCCGAGGAGCAATGAAACCTGATGACAGACCCTTGTGGTTTGATGTATACAAAGCTTTCCCTCCAATCACCGAACCTAAATATGCACGTCCTAATCTTGTAGTCAAAGAAATACGACCAATCTTATACAAGGAAGACGTTTTAAGAGCAAAATTCCATTCAAACGGTTACGGTTTAGCACCAGTAAGCCTATTAAATCAAAGTAATGAAACTCAAACAAAACGTCTTGTACAGCAATACGATGAATTAAAAGCAGAAGGCATTCCTGAAGATGAAATCATTGAGAAAGCCGCACAAGCAGTAGCCGTCGAACGCCACAGCTATGCTGCACAAAAATTGAATGTTACACCTAAAAATCCTGATTCCGTTACAGCCCAAGTATTGGCTGAAGCTGATATAAAAAATATTTTCAACAACAAATAA

Protein

MASSRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARPNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVERHSYAAQKLNVTPKNPDSVTAQVLAEADIKNIFNNK

Uniprot

A0FDR0   H9JBX4   A0A194QUY3   A0A0L7L870   A0A1E1WSS3   A0A194PJY6   + More
A0A212FB60   A0A1A9X0R9   B4MVQ8   A0A1I8N6U7   A0A1A9V9J2   A0A1B0A537   B4HXA8   A0A3B0KBU5   A0A1B0DRG0   A0A1I8Q705   B4Q574   B4KEN6   B4JCY0   A0A067R5F4   A0A1W4VKE1   A0A182MDZ6   A0A034WQZ9   A0A0C9R5R6   A0A182F982   A0A336LMB5   Q8IP62   A0A1L8E001   B3NAC5   A0A1A9XL11   A0A1L8E095   A0A182LYQ8   Q7QD03   A0A182II33   A0A182LGA0   B4P3R1   A0A0K8TVQ1   A0A182UUG0   A0A182QUL5   Q29K79   A0A2M4ASR6   A0A0M4E927   A0A0P4WKZ3   B4GX17   B3MN17   B4M8M0   A0A0C9RUB6   A0A182XW93   A0A182N705   A0A0P5VPZ8   A0A023EHY9   A0A0P5FNG0   A0A224XZY4   A0A2M3ZJ88   A0A2M4C1R9   A0A2M3ZJA2   A0A1B0G935   A0A2M4C1Q9   W5JSP7   A0A2M3ZCH7   A0A182TB17   A0A1B1SN29   A0A084VG89   A0A0P5BKI0   A0A2M4C1P4   A0A182XHJ3   A0A1S4FC32   W8BSU6   U5EFL6   A0A0V0GBW3   A0A182J4G8   A0A1Q3FX00   Q178C3   A0A182HA90   E9G259   A0A3S3P719   A0A3B5JZ70   A0A182VYP1   T1IQ79   A0A2S2QY75   D6WUN6   A0A2R5LHL3   A0A026WY45   A0A293N362   A0A1W4WX76   A0A1W0X4C7   A0A151XBX2   A0A0P4VPY1   H3B5A1   A0A1B6G1M3   A0A1Z5L7Z0   A0A1Y1LFJ9   R7TAJ1   K7IZG9   A0A1B6JL41  

Pubmed

19121390    26354079    26227816    22118469    17994087    25315136    + More
22936249    24845553    25348373    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    12364791    14747013    17210077    20966253    17550304    15632085    25244985    24945155    20920257    23761445    24438588    24495485    17510324    26483478    21292972    21551351    18362917    19820115    24508170    27129103    9215903    28528879    28004739    23254933    20075255   

EMBL

DQ985601    ABJ97190.1    BABH01014833    KQ461137    KPJ08790.1    JTDY01002381    + More
KOB71534.1    GDQN01001004    JAT90050.1    KQ459603    KPI93039.1    AGBW02009379    OWR50959.1    CH963857    EDW75778.1    CH480818    EDW51688.1    OUUW01000006    SPP82531.1    AJVK01019990    CM000361    CM002910    EDX04980.1    KMY90173.1    CH933807    EDW11915.1    CH916368    EDW03219.1    KK852687    KDR18398.1    AXCM01006850    GAKP01002337    JAC56615.1    GBYB01003260    JAG73027.1    UFQS01002906    UFQT01002906    SSX14862.1    SSX34250.1    AE014134    AAN10854.1    GFDF01001994    JAV12090.1    CH954177    EDV58627.1    GFDF01001995    JAV12089.1    AXCM01009416    AAAB01008859    EAA08013.5    APCN01000586    CM000157    EDW88362.1    GDHF01033956    JAI18358.1    AXCN02000321    CH379061    EAL33298.1    GGFK01010500    MBW43821.1    CP012523    ALC39540.1    GDRN01010187    JAI67916.1    CH479195    EDW27344.1    CH902620    EDV31995.1    CH940654    EDW57546.1    GBYB01012395    JAG82162.1    GDIP01097067    LRGB01002384    JAM06648.1    KZS07902.1    GAPW01005092    JAC08506.1    GDIQ01258685    JAJ93039.1    GFTR01002573    JAW13853.1    GGFM01007896    MBW28647.1    GGFJ01010104    MBW59245.1    GGFM01007863    MBW28614.1    CCAG010004816    GGFJ01010102    MBW59243.1    ADMH02000272    ETN67166.1    GGFM01005460    MBW26211.1    KU513760    ANV22166.1    ATLV01012704    KE524809    KFB36983.1    GDIP01187456    JAJ35946.1    GGFJ01010105    MBW59246.1    GAMC01004328    JAC02228.1    GANO01003791    JAB56080.1    GECL01001287    JAP04837.1    GFDL01002911    JAV32134.1    CH477366    EAT42530.1    JXUM01030874    KQ560899    KXJ80432.1    GL732530    EFX86364.1    NCKU01000258    RWS16273.1    JH431295    GGMS01013247    MBY82450.1    KQ971363    EFA07822.2    GGLE01004812    MBY08938.1    KK107063    EZA60995.1    GFWV01022766    MAA47493.1    MTYJ01000018    OQV22329.1    KQ982320    KYQ57810.1    GDKW01002058    JAI54537.1    AFYH01008348    AFYH01008349    GECZ01013434    JAS56335.1    GFJQ02003816    JAW03154.1    GEZM01058821    GEZM01058820    JAV71658.1    AMQN01014198    AMQN01014199    KB310797    ELT90724.1    GECU01007758    JAS99948.1   

Proteomes

UP000005204    UP000053240    UP000037510    UP000053268    UP000007151    UP000091820    + More
UP000007798    UP000095301    UP000078200    UP000092445    UP000001292    UP000268350    UP000092462    UP000095300    UP000000304    UP000009192    UP000001070    UP000027135    UP000192221    UP000075883    UP000069272    UP000000803    UP000008711    UP000092443    UP000007062    UP000075840    UP000075882    UP000002282    UP000075903    UP000075886    UP000001819    UP000092553    UP000008744    UP000007801    UP000008792    UP000076408    UP000075884    UP000076858    UP000092444    UP000000673    UP000075901    UP000030765    UP000076407    UP000075880    UP000008820    UP000069940    UP000249989    UP000000305    UP000285301    UP000005226    UP000075920    UP000007266    UP000053097    UP000192223    UP000075809    UP000008672    UP000014760    UP000002358   

PRIDE

A0FDR0    H9JBX4    Q8IP62   

Pfam

PF10484   MRP-S23        + More
PF04803   Cor1
PF01956   EMC3_TMCO1
PF00053   Laminin_EGF
PF10189   Ints3
PF00132   Hexapep
PF00076   RRM_1

Interpro

IPR023611   Ribosomal_S23/S25_mit        + More
IPR019520   Ribosomal_S23       
IPR014772   Munc13_dom-2       
IPR006888   XLR/SYCP3/FAM9_dom       
IPR000742   EGF-like_dom       
IPR013032   EGF-like_CS       
IPR002809   EMC3/TMCO1       
IPR019333   Int_cplx_su3       
IPR011004   Trimer_LpxA-like_sf       
IPR002049   Laminin_EGF       
IPR011489   EMI_domain       
IPR001451   Hexapep       
IPR035979   RBD_domain_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       

SUPFAM

SSF51161   SSF51161        + More
SSF54928   SSF54928       

Gene 3D

3.30.70.330    

ProteinModelPortal

A0FDR0   H9JBX4   A0A194QUY3   A0A0L7L870   A0A1E1WSS3   A0A194PJY6   + More
A0A212FB60   A0A1A9X0R9   B4MVQ8   A0A1I8N6U7   A0A1A9V9J2   A0A1B0A537   B4HXA8   A0A3B0KBU5   A0A1B0DRG0   A0A1I8Q705   B4Q574   B4KEN6   B4JCY0   A0A067R5F4   A0A1W4VKE1   A0A182MDZ6   A0A034WQZ9   A0A0C9R5R6   A0A182F982   A0A336LMB5   Q8IP62   A0A1L8E001   B3NAC5   A0A1A9XL11   A0A1L8E095   A0A182LYQ8   Q7QD03   A0A182II33   A0A182LGA0   B4P3R1   A0A0K8TVQ1   A0A182UUG0   A0A182QUL5   Q29K79   A0A2M4ASR6   A0A0M4E927   A0A0P4WKZ3   B4GX17   B3MN17   B4M8M0   A0A0C9RUB6   A0A182XW93   A0A182N705   A0A0P5VPZ8   A0A023EHY9   A0A0P5FNG0   A0A224XZY4   A0A2M3ZJ88   A0A2M4C1R9   A0A2M3ZJA2   A0A1B0G935   A0A2M4C1Q9   W5JSP7   A0A2M3ZCH7   A0A182TB17   A0A1B1SN29   A0A084VG89   A0A0P5BKI0   A0A2M4C1P4   A0A182XHJ3   A0A1S4FC32   W8BSU6   U5EFL6   A0A0V0GBW3   A0A182J4G8   A0A1Q3FX00   Q178C3   A0A182HA90   E9G259   A0A3S3P719   A0A3B5JZ70   A0A182VYP1   T1IQ79   A0A2S2QY75   D6WUN6   A0A2R5LHL3   A0A026WY45   A0A293N362   A0A1W4WX76   A0A1W0X4C7   A0A151XBX2   A0A0P4VPY1   H3B5A1   A0A1B6G1M3   A0A1Z5L7Z0   A0A1Y1LFJ9   R7TAJ1   K7IZG9   A0A1B6JL41  

PDB

6NU3     E-value=4.60697e-17,     Score=209

KEGG

778508    K17402 small subunit ribosomal protein S23 | (RefSeq) mitochondrial ribosomal protein-like

GO

GO:0005840   GO:0003735   GO:0006412   GO:0032543   GO:0005763   GO:0005739   GO:0016020   GO:0003723   GO:0005634   GO:0006397   GO:0003917   GO:0006418   GO:0046872   GO:0003824  

PANTHER

PTHR15925   PTHR13587  

Length:

160

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00032

Exp number, first 60 AAs:

0

Total prob of N-in:

0.15954

outside

1  -  160

 

 

Pi

134.310365

Theta

156.314474

Tajima's D

-0.697139

CLR

0.195293

CSRT

0.197090145492725

Interpretation

Uncertain