Gene

KWMTBOMO10417

Annotation

Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]

Location

Bomo_Chr17(-):10636952-10639353      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.663

CDS

ATGTTCCTCACAGATTGTGATCTATGGGACTGTGTAAGTACAGACACACTTGATACTCCTGAATTAAAAAAGAGAGATAGTAAAGCAAGAGCAAAAATATGTCTACTCTTGGAAGAAAACATTTTCCCAATTGTTACCGGTGCCGTAACGGCAAAACAAACATGGGATGCGTTAGAAAAGGCCTACGCCGATGGCGGACTGCTAAGACGACTCACTTTATTAAGAAAATTATTTAATTTGAAATTATCATGTTTCGCAAATATCGAAGCATACATCAATGAAGTGCAGGCGACAAGTCAGGCTTTACAGCGAATCAAATCAGGACTGGATGATGAATTCATTGGGATCATAATGTTAGCTGGGTTGACCGAGGAATACAATCCTTTGGTGATGGCGTTGGAACATTCTGGAAGGAAATTAACTTCAGAAGCGGTCATATCTGCTCTAATGAAGGAAGGACAGCGCAAGCAGCCGGCAGTTGAAATGGATTCTGTGTTAGTGTCTAATAACGAAAAACCTAGTAGTAGTGCGAAAAAGGCAATAATATGTCATTTTTGTAAAAAGAAAGGTCATTTTAAATGGCAATGTAAATTTTATAAAGATAGGGATAAGAAAGGTAATGCAAATGTATGCGTAGCTCAAAATGAGACTAATGATTTTATTACCTTACTCTCTAGTATGAGAAAGTCGAGAAATTGGATTATAGATTCTGGGGCAACATCTCATATGACATCATCAGATAATGTTTTAGTAAATGCTAAAGGTGGTTACCGAAAGTATATAACTACAGCTAATAATGAGAAAATATTATCTAAGGTAAAGGGTGATGTATTGATGCCTAATTATAAGTTAAAATTTGAGAATGTTTTGTACATACCAGATTTGATAACCAATTTACTTTCTGTTAGTAGTATTTGTAAGCATGATTGTACAGTTGTTTTTGATAAACATTCTTGTAAAGTTTACAAATCTGGAGATGTATCCTTAGTGGGAAAAACTATTTTAGAAGCACCTTTAAAAGATGGGCTATATGTAGTAGACCGAGATGACAAGGCATTGGTTACTAAAGACATTAATTCGCCTGATAACGATCAATATAAGTTATGGCATAGGCGTTTAGGTCATTTATCACCAGCTCTAATGAATAAATTAAGAGGGTTAGTTGATGGCTTTACCTTGAATGAATTTAGTAAGGAACCATGCGTCAGTTGTTGTAAAGGTAAACAGTGCGTAAAAAAGTTCCCAAAAAGGAAGAATAAAAGAGCTAAGGATATATTGGAGTTGATTCACACGGACTTAGCTGGACCCATGGAGGAAGAGACATGGGGTGGTGCTCGATATTTTCTTATCTTTGTTGACGATTTTAGTCGGAAAGTTATGGGATATATGTTGAAATCCAAAACAGAAGTATTTGCTAAATTTAAGGAATTCAAGGTGTTTGTGGAGAATCAAACTAATAAAAAGATCAAAAAATTGCGTAGCGATAATGGTACTGAATATATAAACTATGAATTTCAAAGCTTTCTACGAGCTAATGGTATCCATCATCAGACTTCAGTGGCACACACTCCGCAACAAAATGGAGTGGCAGAGCGTACAATTCGTACTGTAATTGAAAAGGCACGTTGTATGTTGCAAGATAGTGGTTTGTCCAAAAAATTTTGGGGAGAAGCTGTGTTAACAGCTATGTATTTAAAAAATAGGTCTCCAACCATGGCTATCTCAGACAAAGTTCCTGAAGAAGTGTGGTCAGGTGAACGAGTGGATATCACCAATCTCAAGGTTTTTGGTAGTAAAGCTCAAGTACTCATTAAGGAAAACAATAGAAGGAAATTTGATTCAAAGTCAAGGGAACTAATTATGATTGGCTATAGTTTGAATCAAAAAGGCTATCGTTTCGTGGATATTAAGAATCCAACTCGGCTAATAATCGCTCGGGACGCAGTATTTTTTGAAAATGTTCAGAATTATGGAAAAGAAACCATTCATCTGGAGTATGTGGATAGTGCGCAGAGCAATGAGGTTTTAGTAAATAATAATTATCATTCGGTAATGCCTCAGGTTCCTGTACATATAGGAGATCCTGATGCAGTGGGGGAATTGGGAATGAATACTCCTGATCCAACCTCCTCTACAAATGATCCAAGCACCTCTACAAACGAACGTCGTTATTCAAAGAGGATTAGACGTCCCAAAATACAAGAAGATATGATCTATAATTTTTTGATTACCGAGGGATCAGATCCTAAGTCAGTTGAGGACGCATTGGAACGTTCGGATCGAGAGTTATGGCACACAGCCATGTTAGATGGATACAATTCGCTGATGCAAAACAAAAACAGTGAACAGAATTAA

Protein

MFLTDCDLWDCVSTDTLDTPELKKRDSKARAKICLLLEENIFPIVTGAVTAKQTWDALEKAYADGGLLRRLTLLRKLFNLKLSCFANIEAYINEVQATSQALQRIKSGLDDEFIGIIMLAGLTEEYNPLVMALEHSGRKLTSEAVISALMKEGQRKQPAVEMDSVLVSNNEKPSSSAKKAIICHFCKKKGHFKWQCKFYKDRDKKGNANVCVAQNETNDFITLLSSMRKSRNWIIDSGATSHMTSSDNVLVNAKGGYRKYITTANNEKILSKVKGDVLMPNYKLKFENVLYIPDLITNLLSVSSICKHDCTVVFDKHSCKVYKSGDVSLVGKTILEAPLKDGLYVVDRDDKALVTKDINSPDNDQYKLWHRRLGHLSPALMNKLRGLVDGFTLNEFSKEPCVSCCKGKQCVKKFPKRKNKRAKDILELIHTDLAGPMEEETWGGARYFLIFVDDFSRKVMGYMLKSKTEVFAKFKEFKVFVENQTNKKIKKLRSDNGTEYINYEFQSFLRANGIHHQTSVAHTPQQNGVAERTIRTVIEKARCMLQDSGLSKKFWGEAVLTAMYLKNRSPTMAISDKVPEEVWSGERVDITNLKVFGSKAQVLIKENNRRKFDSKSRELIMIGYSLNQKGYRFVDIKNPTRLIIARDAVFFENVQNYGKETIHLEYVDSAQSNEVLVNNNYHSVMPQVPVHIGDPDAVGELGMNTPDPTSSTNDPSTSTNERRYSKRIRRPKIQEDMIYNFLITEGSDPKSVEDALERSDRELWHTAMLDGYNSLMQNKNSEQN

Uniprot

A0A0N1ICY1   A0A0J7NHJ8   A0A0A9YFM0   A0A194RJV9   A0A2A4JRI1   A0A2A4J959   + More
A0A0V0T3I0   A0A0N1IFR1   A0A0V1F2E6   A0A0V1K1Y9   A0A0V1FKH2   A0A0V0TUP0   A0A212F7V4   A0A0A9XEY5   A0A0V1APS7   A0A194RU38   A0A1Y1LWI3   A0A2J7Q1Z2   A0A2J7RKJ6   A0A2J7R668   A0A085MVP5   A0A034VP70   A0A2J7R8S8   A0A1W7R657   A0A085N572   A0A224XA26   A0A1Y1N668   A0A1Y1N6L8   A0A1W7R6H6   W4VRQ4   A0A0A1WXQ3   A0A1Y1N932   A0A0V0WR33   V5GAG2   A0A0V0Z6Q0   A0A0J7K0M9   A0A0V0WQU6   W4VRP9   W4VRP2   A0A0A9Z683   A0A146LFV8   A0A1Y3E9R1   A0A1W7R663   A0A1W7R670   A0A1Y1N3X2   A0A0A9WQD4   A0A182GZK6   A0A0V0RDY1   A0A1W7R6J6   A0A1B6E9D0   A0A0V0YNF4   A0A1W7R6K6   A0A0A9XVJ9   K7J5Z3   A0A0V1HT08   A0A0V0T2I4   A0A1Y1LYU4   A0A0A9WPH5   A0A0K8U6S2   A0A0A9WRE3   A0A182GNT8   A0A0A1XLZ7   W8B7K5   A0A1W7R6D6   H3H640   A0A0A9XBM0   W8AUM1   W8B528   A0A2N9GHB5   W8BFA2   A0A2N9EUG1   A0A2N9F1W0   A0A2N9HSV3   A0A2N9IT47   A0A0J7KG03   A0A2K3L6C6   A0A2N9EE40   W8ACZ2   A0A0A1WGJ2   A0A182G9Z6   A0A2N9JB15   A0A151RCJ0   A0A0V0YAP7   A0A2N9J3Y8   A0A2N9IKI1   A0A1W7R6C8   A0A2N9GHK9   A0A0P6IXK4   A0A0J7K7B7   Q9ZRJ0   A0A0A1XSW5   A0A0P6J144   A0A0P6K133   A0A151RCT9  

Pubmed

26354079    25401762    22118469    28004739    24929829    25348373    + More
25830018    26823975    26483478    20075255    24495485    16946064    24500806    28382043    22057054    26999592    8624443   

EMBL

KQ460882    KPJ11482.1    LBMM01004924    KMQ91985.1    GBHO01011746    GBHO01011744    + More
GBHO01011742    JAG31858.1    JAG31860.1    JAG31862.1    KQ460297    KPJ16236.1    NWSH01000816    PCG74073.1    NWSH01002292    PCG68657.1    PCG68658.1    JYDJ01000808    KRX33413.1    KQ460208    KPJ16606.1    JYDR01000001    KRY80095.1    JYDS01000009    JYDV01000021    KRZ33483.1    KRZ41218.1    JYDT01000069    KRY86576.1    JYDJ01000136    KRX42725.1    AGBW02009826    OWR49812.1    GBHO01026221    JAG17383.1    JYDH01000330    KRY26802.1    KQ459875    KPJ19636.1    GEZM01045162    JAV77889.1    NEVH01019375    PNF22597.1    NEVH01002725    PNF41351.1    NEVH01006980    PNF36330.1    KL367628    KFD61291.1    GAKP01015352    JAC43600.1    NEVH01006721    PNF37230.1    GEHC01000991    JAV46654.1    KL367553    KFD64618.1    GFTR01008662    JAW07764.1    GEZM01011856    JAV93393.1    GEZM01011858    GEZM01011854    JAV93389.1    GEHC01000990    JAV46655.1    GANO01000510    JAB59361.1    GBXI01011094    JAD03198.1    GEZM01011857    JAV93390.1    JYDK01000071    KRX78146.1    GALX01001351    JAB67115.1    JYDQ01000379    KRY07987.1    LBMM01017716    KMQ83988.1    KRX78123.1    GANO01000659    JAB59212.1    GANO01000660    JAB59211.1    GBHO01003630    JAG39974.1    GDHC01012180    JAQ06449.1    LVZM01023578    OUC39908.1    GEHC01000988    JAV46657.1    GEHC01000989    JAV46656.1    GEZM01013472    GEZM01013471    GEZM01013470    JAV92539.1    GBHO01036544    JAG07060.1    JXUM01099713    KQ564513    KXJ72145.1    JYDL01000297    KRX12674.1    GEHC01000868    JAV46777.1    GEDC01002834    JAS34464.1    JYDU01000001    KRY01876.1    GEHC01000867    JAV46778.1    GBHO01020706    JAG22898.1    JYDP01000032    KRZ13440.1    JYDJ01000877    KRX33198.1    GEZM01045163    JAV77888.1    GBHO01033237    JAG10367.1    GDHF01030254    JAI22060.1    GBHO01033235    JAG10369.1    JXUM01077078    KQ562985    KXJ74708.1    GBXI01002679    JAD11613.1    GAMC01020736    JAB85819.1    GEHC01000965    JAV46680.1    DS566470    GBHO01026200    JAG17404.1    GAMC01018157    JAB88398.1    GAMC01018154    JAB88401.1    OIVN01001906    SPC98838.1    GAMC01018156    JAB88399.1    OIVN01000332    SPC78433.1    OIVN01000486    SPC81000.1    OIVN01003986    SPD14739.1    OIVN01006217    SPD28032.1    LBMM01008124    KMQ89126.1    ASHM01027010    PNX74094.1    OIVN01000260    SPC77257.1    GAMC01020735    JAB85820.1    GBXI01016677    JAC97614.1    JXUM01155181    KQ572138    KXJ68075.1    OIVN01006466    SPD33659.1    KQ483843    KYP40338.1    JYDU01000039    KRX96809.1    OIVN01006353    SPD31284.1    OIVN01002424    OIVN01005946    SPD03496.1    SPD24589.1    GEHC01000927    JAV46718.1    OIVN01001931    SPC99063.1    GDUN01000214    JAN95705.1    LBMM01012669    KMQ86061.1    D83003    BAA11674.1    GBXI01000292    JAD14000.1    GDUN01000217    JAN95702.1    GDUN01000215    JAN95704.1    KYP40337.1   

Proteomes

UP000053240    UP000036403    UP000218220    UP000055048    UP000054632    UP000054805    + More
UP000054826    UP000054995    UP000007151    UP000054776    UP000235965    UP000054673    UP000054783    UP000243006    UP000069940    UP000249989    UP000054630    UP000054815    UP000002358    UP000055024    UP000005238    UP000236291    UP000075243   

Pfam

PF13976   gag_pre-integrs        + More
PF00665   rve
PF13961   DUF4219
PF07727   RVT_2
PF00098   zf-CCHC
PF00078   RVT_1
PF13696   zf-CCHC_2

Interpro

IPR036875   Znf_CCHC_sf        + More
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR013103   RVT_2       
IPR001584   Integrase_cat-core       
IPR039537   Retrotran_Ty1/copia-like       
IPR025314   DUF4219       
IPR025724   GAG-pre-integrase_dom       
IPR036397   RNaseH_sf       
IPR000477   RT_dom       
IPR025829   Zn_knuckle_CX2CX3GHX4C       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       

Gene 3D

3.30.420.10    

ProteinModelPortal

A0A0N1ICY1   A0A0J7NHJ8   A0A0A9YFM0   A0A194RJV9   A0A2A4JRI1   A0A2A4J959   + More
A0A0V0T3I0   A0A0N1IFR1   A0A0V1F2E6   A0A0V1K1Y9   A0A0V1FKH2   A0A0V0TUP0   A0A212F7V4   A0A0A9XEY5   A0A0V1APS7   A0A194RU38   A0A1Y1LWI3   A0A2J7Q1Z2   A0A2J7RKJ6   A0A2J7R668   A0A085MVP5   A0A034VP70   A0A2J7R8S8   A0A1W7R657   A0A085N572   A0A224XA26   A0A1Y1N668   A0A1Y1N6L8   A0A1W7R6H6   W4VRQ4   A0A0A1WXQ3   A0A1Y1N932   A0A0V0WR33   V5GAG2   A0A0V0Z6Q0   A0A0J7K0M9   A0A0V0WQU6   W4VRP9   W4VRP2   A0A0A9Z683   A0A146LFV8   A0A1Y3E9R1   A0A1W7R663   A0A1W7R670   A0A1Y1N3X2   A0A0A9WQD4   A0A182GZK6   A0A0V0RDY1   A0A1W7R6J6   A0A1B6E9D0   A0A0V0YNF4   A0A1W7R6K6   A0A0A9XVJ9   K7J5Z3   A0A0V1HT08   A0A0V0T2I4   A0A1Y1LYU4   A0A0A9WPH5   A0A0K8U6S2   A0A0A9WRE3   A0A182GNT8   A0A0A1XLZ7   W8B7K5   A0A1W7R6D6   H3H640   A0A0A9XBM0   W8AUM1   W8B528   A0A2N9GHB5   W8BFA2   A0A2N9EUG1   A0A2N9F1W0   A0A2N9HSV3   A0A2N9IT47   A0A0J7KG03   A0A2K3L6C6   A0A2N9EE40   W8ACZ2   A0A0A1WGJ2   A0A182G9Z6   A0A2N9JB15   A0A151RCJ0   A0A0V0YAP7   A0A2N9J3Y8   A0A2N9IKI1   A0A1W7R6C8   A0A2N9GHK9   A0A0P6IXK4   A0A0J7K7B7   Q9ZRJ0   A0A0A1XSW5   A0A0P6J144   A0A0P6K133   A0A151RCT9  

PDB

3O4Q     E-value=0.0234269,     Score=91

KEGG

NA   

GO

GO:0000943   GO:0015074   GO:0008270   GO:0003676   GO:0004491   GO:0006544   GO:0006563   GO:0030170   GO:0016740   GO:0006418   GO:0003723   GO:0046872   GO:0003824  

PANTHER

PTHR11439  

Length:

784

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03728

Exp number, first 60 AAs:

0.03227

Total prob of N-in:

0.00191

outside

1  -  784

 

 

Pi

159.845979

Theta

159.54292

Tajima's D

0.027561

CLR

0.091874

CSRT

0.379681015949203

Interpretation

Uncertain