Gene

KWMTBOMO10413  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007023

Annotation

PREDICTED:_zinc_finger_protein_836-like_[Bombyx_mori]

Location

Bomo_Chr17(-):10497779-10503963      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.348

CDS

ATGACTTCTATTCTTCTCATTAAATCAATGCTGCTGGCAGAGGCTTTACAGAACAAAAAGAAAAAGAAAATACGAAAGTTACGGAAAAGAAGAAATTTGGAGAAAACGACAATAATTATGTGCAGAATATGCAACGAGGAAAAAGGAGAGATTCCTATATTTGACAATCTTGTACACCAGAATATTCCGGAGGAGATAAAACATTTTTCTGGAGTCACTATATCCAAAACAGACCATTTGTCTAAAAAAATGTGTCAAAGCTGTCTTGATCTATTGAATGGTTGTATAATGTTTAGAGAGATATGTCAGAAAAACAATGAAATGTTACTGGAGGTTTCCATTAAAACAGAATGTGATGTGGACTACAACAGAAACGAAGACAGTGACAAGCCTCAAAAAGAAATCGATTACTCTTATAAAGTACCATCACCAGACTTTTCAGATGATAACTCCGAGAGTTTAAACTGTTCAATATGTAATAAGCAATTTTGTGATGCAACATCATACGAGACTCATCTGATGAAATGTAGCTTAGAAGAAAGTTCCTCAATTCCTAAGCCACCTAAAAAAACACAAAAAGAAGCTAACCAGAAAAAGATATTTTTATGTGACATATGTGGTAAAACAGCAGTTTCTAAGGCAAGCCTCTTAACACATATGTGCACACACGAAAACGTGTTTCCTTATAAATGCGACGTATGCCCATACAAAGGTAGAACTGTGGACTTGTTGAGGGTACATAAAAGATCTCACTTACGTGAGAAACCTTTCAAATGTTCCTTGTGCCCTAAAGGTACAACGACCTCGAGCAACCTTGCTAAACACATGCGACATGTCCACAGTACAGCAAGGCCACATAAGTGTAACTACTGCGATAAGGCATTTACCTATCAACATGATATGAAAAGGCACATCAAAGACATACATCTGAGACAGGGAACGGTTGAATGTAACGTATGCCATAAGAAATTCAATACAAAAAAGATTTTGCAAGGGCACAAATGGAAAATACACAAGATCAAAGGAGAACGTCAAGGACGTCTACCGTCATACTTACAGTGTCAAATAGGAGGACAAATCGAGAATGAGAATGAGAATGACGATCTTAACAACTGTGACCCAAATAGCTCTCATCTGATAGAACTTAGATCACTGGATTTTAAGATGGATTAA

Protein

MTSILLIKSMLLAEALQNKKKKKIRKLRKRRNLEKTTIIMCRICNEEKGEIPIFDNLVHQNIPEEIKHFSGVTISKTDHLSKKMCQSCLDLLNGCIMFREICQKNNEMLLEVSIKTECDVDYNRNEDSDKPQKEIDYSYKVPSPDFSDDNSESLNCSICNKQFCDATSYETHLMKCSLEESSSIPKPPKKTQKEANQKKIFLCDICGKTAVSKASLLTHMCTHENVFPYKCDVCPYKGRTVDLLRVHKRSHLREKPFKCSLCPKGTTTSSNLAKHMRHVHSTARPHKCNYCDKAFTYQHDMKRHIKDIHLRQGTVECNVCHKKFNTKKILQGHKWKIHKIKGERQGRLPSYLQCQIGGQIENENENDDLNNCDPNSSHLIELRSLDFKMD

Uniprot

A0A212FG77   A0A194PI86   A0A194QTY8   A0A2H1VBV7   A0A2A4IVI8   A0A1E1WP98   + More
A0A194PK55   A0A1E1WIZ6   A0A194RP61   H9JMG1   A0A2H1W341   S4PGP2   A0A2H1VT86   A0A2A4JFN6   A0A194PJV7   A0A0L7LRQ9   A0A212EYL8   H9JMG6   A0A1E1W6T3   A0A194RQM6   A0A2A4JG74   A0A2A4JER5   A0A0L7KN53   S4PD46   A0A2H1WH54   B4NGC3   Q7PSS4   D6X4Z7   A0A0L7K2S7   A0A0M4EKL0   A0A1W4W9L4   A0A182G2R8   A0A212EZF7   Q9VR05   A0A2H1VC51   A0A2J7RJX0   A0A0R3P0M4   B4NG49   D6WKU4   A0A084VH62   B4GJE3  

Pubmed

22118469    26354079    19121390    23622113    26227816    17994087    + More
12364791    18362917    19820115    26483478    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    24438588   

EMBL

AGBW02008703    OWR52736.1    KQ459603    KPI93027.1    KQ461137    KPJ08779.1    + More
ODYU01001731    SOQ38328.1    NWSH01006877    PCG63202.1    GDQN01002234    JAT88820.1    KQ459601    KPI93702.1    GDQN01004061    JAT86993.1    KQ459875    KPJ19633.1    BABH01016863    ODYU01005946    SOQ47366.1    GAIX01003572    JAA88988.1    ODYU01004307    SOQ44037.1    NWSH01001646    PCG70576.1    KPI93716.1    JTDY01000233    KOB78143.1    AGBW02011486    OWR46570.1    BABH01016826    GDQN01008348    JAT82706.1    KPJ19615.1    PCG70574.1    PCG70575.1    JTDY01008160    KOB64707.1    GAIX01003806    JAA88754.1    ODYU01008528    SOQ52212.1    CH964251    EDW83340.1    AAAB01008816    EAA05114.5    KQ971381    EEZ97217.1    JTDY01015286    KOB51959.1    CP012526    ALC47758.1    JXUM01140009    JXUM01140010    KQ568989    KXJ68803.1    AGBW02011289    OWR46885.1    AE014134    AY051819    AAF51003.2    AAK93243.1    ODYU01001747    SOQ38366.1    NEVH01002985    PNF41133.1    CH379062    KRT05085.1    EDW83266.1    KQ971343    EFA04018.2    ATLV01013145    KE524842    KFB37306.1    CH479184    EDW37457.1   

Proteomes

UP000007151    UP000053268    UP000053240    UP000218220    UP000005204    UP000037510    + More
UP000007798    UP000007062    UP000007266    UP000092553    UP000192221    UP000069940    UP000249989    UP000000803    UP000235965    UP000001819    UP000030765    UP000008744   

PRIDE

H9JMG1    H9JMG6    Q9VR05   

Pfam

PF07776   zf-AD        + More
PF00096   zf-C2H2

Interpro

IPR012934   Znf_AD        + More
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

A0A212FG77   A0A194PI86   A0A194QTY8   A0A2H1VBV7   A0A2A4IVI8   A0A1E1WP98   + More
A0A194PK55   A0A1E1WIZ6   A0A194RP61   H9JMG1   A0A2H1W341   S4PGP2   A0A2H1VT86   A0A2A4JFN6   A0A194PJV7   A0A0L7LRQ9   A0A212EYL8   H9JMG6   A0A1E1W6T3   A0A194RQM6   A0A2A4JG74   A0A2A4JER5   A0A0L7KN53   S4PD46   A0A2H1WH54   B4NGC3   Q7PSS4   D6X4Z7   A0A0L7K2S7   A0A0M4EKL0   A0A1W4W9L4   A0A182G2R8   A0A212EZF7   Q9VR05   A0A2H1VC51   A0A2J7RJX0   A0A0R3P0M4   B4NG49   D6WKU4   A0A084VH62   B4GJE3  

PDB

5WJQ     E-value=1.97565e-14,     Score=192

KEGG

101741179    no KO assigned | (RefSeq) zinc finger protein 836-like

GO

GO:0005634   GO:0003676   GO:0008270   GO:0045893   GO:0043565   GO:0045892   GO:0045944   GO:0003700   GO:0003677   GO:0001228   GO:0046872   GO:0006415   GO:0016021   GO:0006418   GO:0003723   GO:0003824  

Length:

390

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0002

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00533

outside

1  -  390

 

 

Pi

50.700536

Theta

73.202169

Tajima's D

-0.928119

CLR

306.689401

CSRT

0.154042297885106

Interpretation

Uncertain