Gene

KWMTBOMO10404

Annotation

PREDICTED:_uncharacterized_protein_LOC101743613_[Bombyx_mori]

Location

Bomo_Chr17(+):10263539-10267901      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.844 Nuclear   Reliability : 1.166

CDS

ATGTCCGTTTGGGTGGGGAGAGGAGGCGAAGACCGGGCGGAACCAGCCGGTCCAACGTCCTCCACTCTCTTGTCGAATAACACCTCCATGGAATCCGGGATCGAAGCCGGTGTCTTACCCACAGTCACGGGATCCTTGGCATCAGCACGGGATTCTTTGGGTTCCTTATCACGCGCCGCAGAACCTCTCTATGATACAGATCACACAGATCTTGGTTCGGAATTGGACGAGGCGGAAATACGAAGGGAGTTGATGCACGATAAATGGCGGCTACTTTTCGATCGATTCGATCCAGAGGGTTTTGGCGAGATCCCGTGGCCAGACTTTCTACAAACACTTCAACATCCTGATTTTATAGCACAGGTCCCGACTCATAAAAGAGAGATCCTTTTAGATAAAGCTCAATGTTCGAAAACTAGTGCTATAACATTCCAAGAGTTCGTGAATGTGATACAAAGAGTACTTTTGAAGTTCTTTATCAGTTAA

Protein

MSVWVGRGGEDRAEPAGPTSSTLLSNNTSMESGIEAGVLPTVTGSLASARDSLGSLSRAAEPLYDTDHTDLGSELDEAEIRRELMHDKWRLLFDRFDPEGFGEIPWPDFLQTLQHPDFIAQVPTHKREILLDKAQCSKTSAITFQEFVNVIQRVLLKFFIS

Similarity

Belongs to the universal ribosomal protein uS4 family.

Uniprot

A0A2H1W5I7   A0A194PIZ3   A0A194R5K4   H9JC29   A0A0L7KVC1   A0A182WMC1   + More
A0A1W4W498   A0A1W4W484   A0A182WMB9   A0A182SKY2   Q17K92   A0A139WCZ2   A0A182GMD5   Q7PQ40   A0A151WZ84   A0A195F5N9   A0A195BW46   A0A195EJZ9   A0A1B0ET12   A0A195D687   F4WXT1   E9IAT7   A0A158NT76   K7IMR5   E2B591   A0A0L7RAA2   A0A336LIX5   E2B1L6   A0A0J7NS68   A0A0J9UC12   A0A182KFT5   A0A026VYE9   A0A182YJ11   A0A0J9RN34   A0A182YJ13   A0A1A9YEA8   A0A1B0FL21   A0A1B0AVN0   A0A182UDB3   A0A088ATN1   A0A182X0W4   A0A182HPD3   A0A0R1DU87   A0A182FHU0   A0A1A9ZU38   A0A0P8XSN1   Q29FG6   A0A182NLX4   A0A182LB65   A0A182QBW9   Q9W0E9   A0A182V8H2   A0A182NZQ5   A0A084WCS1   A0A154P5W7   A0A232FHG2   B4QM21   B3NBB2   B4HVT7   B4H1C0   B0XH68   B4L8V8   A0A3B0JRU6   B4IXI9   B4LCX1   A0A0K8UIK6   B4MLF1   A0A1W4W7X4   A0A0M4EF70   A0A182JM92   A0A0N1ITF2   A0A0L0C4K0   A0A1A9WBS3   D8X0C5  

Pubmed

26354079    19121390    26227816    17510324    18362917    19820115    + More
26483478    12364791    14747013    17210077    21719571    21282665    21347285    20075255    20798317    22936249    24508170    30249741    25244985    17994087    17550304    15632085    20966253    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    24438588    28648823    18057021    26108605    20826532   

EMBL

ODYU01006478    SOQ48350.1    KQ459603    KPI93018.1    KQ460685    KPJ12794.1    + More
BABH01014793    JTDY01005282    KOB67158.1    CH477227    EAT47093.1    KQ971361    KYB25800.1    JXUM01014064    KQ560393    KXJ82647.1    AAAB01008900    EAA09345.5    KQ982649    KYQ53204.1    KQ981805    KYN35497.1    KQ976403    KYM92186.1    KQ978801    KYN28242.1    AJWK01006342    KQ976842    KYN07939.1    GL888427    EGI61009.1    GL762073    EFZ22304.1    ADTU01025657    ADTU01025658    ADTU01025659    ADTU01025660    ADTU01025661    ADTU01025662    ADTU01025663    GL445739    EFN89144.1    KQ414619    KOC67785.1    UFQS01000016    UFQT01000016    SSW97430.1    SSX17816.1    GL444953    EFN60372.1    LBMM01002084    KMQ95295.1    CM002912    KMY96825.1    KK107570    QOIP01000005    EZA48792.1    RLU22487.1    KMY96824.1    CCAG010011451    JXJN01004323    CM000159    KRK00736.1    CH902618    KPU77725.1    CH379067    EAL31289.2    AXCN02000948    AE014296    AAF47499.2    ATLV01022862    KE525337    KFB48015.1    KQ434823    KZC07243.1    NNAY01000240    OXU29777.1    CM000363    EDX08807.1    CH954178    EDV50165.1    CH480817    EDW50052.1    CH479202    EDW30097.1    DS233111    EDS28130.1    CH933816    EDW17133.1    KRG07629.1    OUUW01000009    SPP84854.1    CH916366    EDV96426.1    CH940647    EDW68832.1    GDHF01025938    GDHF01001813    JAI26376.1    JAI50501.1    CH963847    EDW72807.1    CP012525    ALC42852.1    KQ435812    KOX72821.1    JRES01000932    KNC27182.1    GU475092    ADJ97386.1   

Proteomes

UP000053268    UP000053240    UP000005204    UP000037510    UP000075920    UP000192223    + More
UP000075901    UP000008820    UP000007266    UP000069940    UP000249989    UP000007062    UP000075809    UP000078541    UP000078540    UP000078492    UP000092461    UP000078542    UP000007755    UP000005205    UP000002358    UP000008237    UP000053825    UP000000311    UP000036403    UP000075881    UP000053097    UP000279307    UP000076408    UP000092443    UP000092444    UP000092460    UP000075902    UP000005203    UP000076407    UP000002282    UP000069272    UP000092445    UP000007801    UP000001819    UP000075884    UP000075882    UP000075886    UP000000803    UP000075903    UP000075885    UP000030765    UP000076502    UP000215335    UP000000304    UP000008711    UP000001292    UP000008744    UP000002320    UP000009192    UP000268350    UP000001070    UP000008792    UP000007798    UP000192221    UP000092553    UP000075880    UP000053105    UP000037069    UP000091820   

PRIDE

H9JC29    Q9W0E9   

Pfam

PF01694   Rhomboid        + More
PF00163   Ribosomal_S4
PF01479   S4

Interpro

IPR011992   EF-hand-dom_pair        + More
IPR002048   EF_hand_dom       
IPR035952   Rhomboid-like_sf       
IPR017213   Peptidase_S54_rhomboid_met       
IPR022764   Peptidase_S54_rhomboid_dom       
IPR002942   S4_RNA-bd       
IPR018079   Ribosomal_S4_CS       
IPR005710   Ribosomal_S4/S9_euk/arc       
IPR036986   S4_RNA-bd_sf       
IPR022801   Ribosomal_S4/S9       
IPR001912   Ribosomal_S4/S9_N       

SUPFAM

SSF47473   SSF47473       

Gene 3D

1.20.1540.10     3.10.290.10    

CDD

cd00165  S4

ProteinModelPortal

A0A2H1W5I7   A0A194PIZ3   A0A194R5K4   H9JC29   A0A0L7KVC1   A0A182WMC1   + More
A0A1W4W498   A0A1W4W484   A0A182WMB9   A0A182SKY2   Q17K92   A0A139WCZ2   A0A182GMD5   Q7PQ40   A0A151WZ84   A0A195F5N9   A0A195BW46   A0A195EJZ9   A0A1B0ET12   A0A195D687   F4WXT1   E9IAT7   A0A158NT76   K7IMR5   E2B591   A0A0L7RAA2   A0A336LIX5   E2B1L6   A0A0J7NS68   A0A0J9UC12   A0A182KFT5   A0A026VYE9   A0A182YJ11   A0A0J9RN34   A0A182YJ13   A0A1A9YEA8   A0A1B0FL21   A0A1B0AVN0   A0A182UDB3   A0A088ATN1   A0A182X0W4   A0A182HPD3   A0A0R1DU87   A0A182FHU0   A0A1A9ZU38   A0A0P8XSN1   Q29FG6   A0A182NLX4   A0A182LB65   A0A182QBW9   Q9W0E9   A0A182V8H2   A0A182NZQ5   A0A084WCS1   A0A154P5W7   A0A232FHG2   B4QM21   B3NBB2   B4HVT7   B4H1C0   B0XH68   B4L8V8   A0A3B0JRU6   B4IXI9   B4LCX1   A0A0K8UIK6   B4MLF1   A0A1W4W7X4   A0A0M4EF70   A0A182JM92   A0A0N1ITF2   A0A0L0C4K0   A0A1A9WBS3   D8X0C5  

KEGG

101743613    no KO assigned | (RefSeq) uncharacterized LOC101743613

GO

GO:0005509   GO:0004252   GO:0016021   GO:0006412   GO:0003735   GO:0019843   GO:0015935   GO:0016787   GO:0038005   GO:0036098   GO:0030173   GO:0038004   GO:0005794   GO:0006508  

PANTHER

PTHR11831  

Length:

161

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00461

Exp number, first 60 AAs:

0.00304

Total prob of N-in:

0.07947

outside

1  -  161

 

 

Pi

281.836921

Theta

227.278906

Tajima's D

0.786523

CLR

0.138472

CSRT

0.5971201439928

Interpretation

Uncertain