Gene

KWMTBOMO10399

Pre Gene Modal

BGIBMGA007032

Annotation

PREDICTED:_cytohesin-1_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr17(-):10161063-10186648      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.691

CDS

ATGTACAAAAAGCAACTTAAAGATGAACTCGGCGAAGTGGTGGCCGAGCTGGAAGCCCTTGATGGGCAGGAGGAGTGTAAGCAGAATAGTAAAGCCAAACAGATGAGCATAGGAAGGAAGAAATTTAATATGGATCCAAAGAAAGGTATCGAATACCTTTATGAAAATGGTCTACTGCAGAGGACGCCGGAGGACGTGGCGCAGTTCCTTCACAAAGGCGAGGGACTGAGCAAAACCGCGATAGGCGACTACCTCGGTGAACGATCGGAATTCAACGAGGCGGTACTAAAAGCCTTTGTCGATCTCCATGACTTCACTGATTTAATACTCGTGCAGGCTCTCAGACAATTCCTATGGAGTTTTCGATTGCCCGGCGAGGCTCAGAAGATAGATCGGATGATGGAATGCTTTGCCCAGAGATACTGCCAGTTGAACCCCGATATCTTCACGAACGCGGACACGTGCTACGTTCTTAGTTTCGCCATAATAATGCTGAACACGTCGCTGCACAATCCGAGTGTTAAAGACAAACCGACACCTGAACAATTCGTCGCGATGAACCGGGGCATCAATAACGGGGGTGATCTGCCGCAGGAGTTGCTCTTGTCATTGTACGAGTCTATAAAGACAGAGCCCTTTAAGATACCCGAGGACGACGGAAACGATCTCATGCACACATTCTTCAATCCCGACAAAGAAGGCTGGCTGTGGAAGCAAGGCGGCAGATACAAATCGTGGAAGAGACGGTGGTTTATACTGAACGACAACTGCCTGTATTACTTCGAGTACACGACCGACAAGGAGCCGAGGGGGATTATTCCATTAGAAAATATATCTGTTCGTCCAGCCAGCGATAGACAGCGACCACATTGTCTAGAGCTATACGCGAGCGGAGGGGCTGATCTCATCAAGGCGTGCAAGACCGACTCTGAGGGAAAAGTCGTCGAAGGAAAACATACTGTCTACAGAATGTCAGCGGCAACAGTGGAAGAGCGTGATGAATGGATAGAGTGCTTGCGTCGTTCAATAAGTCACAATCCATTTTACGACATGTTGGCGCAGAGGAAGAAGAAGGCGCAACACAGCGGACACTCCGGCTCACACTAA

Protein

MYKKQLKDELGEVVAELEALDGQEECKQNSKAKQMSIGRKKFNMDPKKGIEYLYENGLLQRTPEDVAQFLHKGEGLSKTAIGDYLGERSEFNEAVLKAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPDIFTNADTCYVLSFAIIMLNTSLHNPSVKDKPTPEQFVAMNRGINNGGDLPQELLLSLYESIKTEPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCLYYFEYTTDKEPRGIIPLENISVRPASDRQRPHCLELYASGGADLIKACKTDSEGKVVEGKHTVYRMSAATVEERDEWIECLRRSISHNPFYDMLAQRKKKAQHSGHSGSH

Uniprot

A0A2H1VGB3   A0A212FG89   A0A3S2LTI0   A0A1B6K4J7   A0A1B6FTF1   A0A1B6H0B3   + More
A0A1B6IPU4   A0A1B6EV83   A0A2J7RGH6   A0A1B6JZC9   A0A067QLQ8   A0A1B0CY03   A0A2J7RGG4   A0A023F5U4   A0A224XLD2   A0A1L8DVB4   A0A146LXA4   E0W2F2   A0A146M9N3   A0A069DTB2   A0A158NQA9   E2B031   Q17HL6   A0A195CV07   A0A182F3R1   A0A0P8XF96   A0A182LWF6   A0A182VTI6   A0A151X9R4   A0A182R424   A0A182NBA6   A0A195B5R7   A0A182YQJ8   A0A026WLH2   A0A182X676   A0A0C9QZD1   A0A2S2QED9   A0A182TPX5   A0A2M4A7N5   A0A2M4A7S2   A0A182V2X8   A0A1S4GZV8   A0A182IB96   A0A1A9WX99   A0A151JZ21   A0A0C9QCN5   A0A182P8Q3   A0A2H8TXG6   J9JT95   A0A2A3E0N8   A0A2S2PHH5   A0A2M4CQI8   A0A1Q3FW94   A0A1Q3FVX6   A0A3L8DAS9   W5JR48   A0A023EVR5   A0A232FL08   B4Q4G1   A0A182QFS1   A0A1W4VEV5   A0A0J9R5I6   A0A1Q3FVZ7   A0A0C9PJE0   A0A1S4GZ38   A0A0K8WFP3   Q7PPK6   Q0E8N2   B3ML89   A0A146KKK7   A0A0P9A4V7   A0A3B0KZL5   A0A0R3NQK7   B3NKR8   A0A1W4V2J0   A0A182IZ51   A0A0R1DP87   K7J823   A0A0M4ES49   Q29PF7   B4GKP2   B4N7K5   A0A0Q5VJS0   W8AQK1   A0A0R3NQX9   A0A0J9R566   T1IR78   Q9V9Q6   A0A0K8TPU3   A0A151JNQ3   B4P6G2   A0A194R6C2   A0A0Q5VJW6   A0A0J9R6N8   A0A0R1DUC7   A0A1S4F2K9   A0A0Q9WG84   A0A0Q9XGC9   F4WBE6   B4JE29  

Pubmed

22118469    24845553    25474469    26823975    20566863    26334808    + More
21347285    20798317    17510324    17994087    25244985    24508170    12364791    30249741    20920257    23761445    24945155    26483478    28648823    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    17550304    20075255    24495485    26369729    26354079    21719571   

EMBL

ODYU01002401    SOQ39836.1    AGBW02008703    OWR52748.1    RSAL01000218    RVE44092.1    + More
GECU01001336    JAT06371.1    GECZ01016301    GECZ01008340    JAS53468.1    JAS61429.1    GECZ01021758    GECZ01001678    JAS48011.1    JAS68091.1    GECU01018765    JAS88941.1    GECZ01027863    GECZ01008372    JAS41906.1    JAS61397.1    NEVH01003784    PNF39927.1    GECU01003156    JAT04551.1    KK853278    KDR09055.1    AJWK01035199    AJWK01035200    AJWK01035201    AJWK01035202    AJWK01035203    AJWK01035204    PNF39926.1    GBBI01002163    JAC16549.1    GFTR01005798    JAW10628.1    GFDF01003731    JAV10353.1    GDHC01006984    JAQ11645.1    DS235878    EEB19808.1    GDHC01003359    JAQ15270.1    GBGD01001903    JAC86986.1    ADTU01023011    GL444372    EFN60957.1    CH477247    EAT46141.1    KQ977279    KYN03999.1    CH902620    KPU73567.1    AXCM01002576    KQ982365    KYQ57117.1    KQ976595    KYM79615.1    KK107167    EZA56501.1    GBYB01001075    JAG70842.1    GGMS01006904    MBY76107.1    GGFK01003495    MBW36816.1    GGFK01003494    MBW36815.1    AAAB01008944    APCN01000658    KQ981451    KYN41627.1    GBYB01001074    JAG70841.1    GFXV01006407    MBW18212.1    ABLF02024596    KZ288470    PBC25333.1    GGMR01016235    MBY28854.1    GGFL01003424    MBW67602.1    GFDL01003309    JAV31736.1    GFDL01003308    JAV31737.1    QOIP01000010    RLU17446.1    ADMH02000673    ETN65375.1    JXUM01114132    JXUM01114133    GAPW01000421    KQ565756    JAC13177.1    KXJ70698.1    NNAY01000057    OXU31434.1    CM000361    EDX05758.1    AXCN02000628    CM002910    KMY91383.1    GFDL01003288    JAV31757.1    GBYB01001073    JAG70840.1    GDHF01020131    GDHF01004487    GDHF01002465    JAI32183.1    JAI47827.1    JAI49849.1    EAA10260.4    AE014134    BT124891    ABI31329.2    ACZ94327.1    ADG46059.1    AGB93213.1    EDV31707.1    GDHC01021621    JAP97007.1    KPU73566.1    OUUW01000022    SPP89528.1    CH379058    KRT03400.1    CH954179    EDV54372.2    CM000158    KRJ98782.1    KRJ98783.1    CP012523    ALC39832.1    EAL34336.1    CH479184    EDW37208.1    CH964214    EDW80344.1    KQS61782.1    GAMC01018228    JAB88327.1    KRT03401.1    KMY91382.1    JH431338    AY071322    BT072836    AAF57230.2    AAL48944.1    ACN63458.1    GDAI01001455    JAI16148.1    KQ978820    KYN28124.1    EDW89919.1    KQ460685    KPJ12790.1    KQS61783.1    KMY91384.1    KRJ98784.1    CH940649    KRF81271.1    CH933807    KRG03265.1    GL888062    EGI68502.1    CH916368    EDW03549.1   

Proteomes

UP000007151    UP000283053    UP000235965    UP000027135    UP000092461    UP000009046    + More
UP000005205    UP000000311    UP000008820    UP000078542    UP000069272    UP000007801    UP000075883    UP000075920    UP000075809    UP000075900    UP000075884    UP000078540    UP000076408    UP000053097    UP000076407    UP000075902    UP000075903    UP000075840    UP000091820    UP000078541    UP000075885    UP000007819    UP000242457    UP000279307    UP000000673    UP000069940    UP000249989    UP000215335    UP000000304    UP000075886    UP000192221    UP000007062    UP000000803    UP000268350    UP000001819    UP000008711    UP000075880    UP000002282    UP000002358    UP000092553    UP000008744    UP000007798    UP000078492    UP000053240    UP000008792    UP000009192    UP000007755    UP000001070   

PRIDE

Q0E8N2   

Pfam

PF01369   Sec7        + More
PF00169   PH
PF10408   Ufd2P_core
PF04564   U-box
PF17921   Integrase_H2C2

Interpro

IPR011993   PH-like_dom_sf        + More
IPR001849   PH_domain       
IPR035999   Sec7_dom_sf       
IPR023394   Sec7_C_sf       
IPR000904   Sec7_dom       
IPR013083   Znf_RING/FYVE/PHD       
IPR019474   Ub_conjug_fac_E4_core       
IPR003613   Ubox_domain       
IPR041588   Integrase_H2C2       

SUPFAM

SSF48425   SSF48425       

Gene 3D

1.10.1000.11     2.30.29.30     3.30.40.10    

CDD

cd00171  Sec7

ProteinModelPortal

A0A2H1VGB3   A0A212FG89   A0A3S2LTI0   A0A1B6K4J7   A0A1B6FTF1   A0A1B6H0B3   + More
A0A1B6IPU4   A0A1B6EV83   A0A2J7RGH6   A0A1B6JZC9   A0A067QLQ8   A0A1B0CY03   A0A2J7RGG4   A0A023F5U4   A0A224XLD2   A0A1L8DVB4   A0A146LXA4   E0W2F2   A0A146M9N3   A0A069DTB2   A0A158NQA9   E2B031   Q17HL6   A0A195CV07   A0A182F3R1   A0A0P8XF96   A0A182LWF6   A0A182VTI6   A0A151X9R4   A0A182R424   A0A182NBA6   A0A195B5R7   A0A182YQJ8   A0A026WLH2   A0A182X676   A0A0C9QZD1   A0A2S2QED9   A0A182TPX5   A0A2M4A7N5   A0A2M4A7S2   A0A182V2X8   A0A1S4GZV8   A0A182IB96   A0A1A9WX99   A0A151JZ21   A0A0C9QCN5   A0A182P8Q3   A0A2H8TXG6   J9JT95   A0A2A3E0N8   A0A2S2PHH5   A0A2M4CQI8   A0A1Q3FW94   A0A1Q3FVX6   A0A3L8DAS9   W5JR48   A0A023EVR5   A0A232FL08   B4Q4G1   A0A182QFS1   A0A1W4VEV5   A0A0J9R5I6   A0A1Q3FVZ7   A0A0C9PJE0   A0A1S4GZ38   A0A0K8WFP3   Q7PPK6   Q0E8N2   B3ML89   A0A146KKK7   A0A0P9A4V7   A0A3B0KZL5   A0A0R3NQK7   B3NKR8   A0A1W4V2J0   A0A182IZ51   A0A0R1DP87   K7J823   A0A0M4ES49   Q29PF7   B4GKP2   B4N7K5   A0A0Q5VJS0   W8AQK1   A0A0R3NQX9   A0A0J9R566   T1IR78   Q9V9Q6   A0A0K8TPU3   A0A151JNQ3   B4P6G2   A0A194R6C2   A0A0Q5VJW6   A0A0J9R6N8   A0A0R1DUC7   A0A1S4F2K9   A0A0Q9WG84   A0A0Q9XGC9   F4WBE6   B4JE29  

PDB

6BBP     E-value=7.23303e-148,     Score=1343

KEGG

101739334    K18441 cytohesin | (RefSeq) cytohesin-1

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0005086   GO:0032012   GO:0000151   GO:0006511   GO:0034450   GO:0016021   GO:1904269   GO:0110020   GO:0045742   GO:0005547   GO:0030100   GO:0032154   GO:0007474   GO:0014068   GO:0070374   GO:2000481   GO:0070938   GO:0040018   GO:0042803   GO:0007391   GO:0046628   GO:0005913   GO:0032014   GO:0000139   GO:0001700   GO:0005829   GO:0032956   GO:0005886   GO:0005938   GO:0004674   GO:0006415   GO:0006418   GO:0003723   GO:0046872   GO:0003824  

Length:

368

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.17555

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03179

outside

1  -  368

 

 

Pi

258.599617

Theta

178.637852

Tajima's D

1.14821

CLR

0.079575

CSRT

0.698515074246288

Interpretation

Uncertain