SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10390
Annotation
reverse_transcriptase_[Danaus_plexippus]
Location in the cell
Nuclear   Reliability : 1.247
 

Sequence

CDS
ATGCGCTCTGCGCTCGCCAGCGACTCGGGTGCGATCAACCCCACCAGATCATCGGCGGGGAAAAAGAGGAGGCGAAAGAAGACCCCATTACAAACTTCCGACGATGGCGGTGCGTCATCCTCCAGCATCGAGGTGCCGGAAAAGACGATGGCTGTCGAGGAGGTGGTTCCGGTGGTTTCGGGGCCTGCCACGTCGGAAGATATGATGCCTGCTCCCCAGTGGGCACCAGTAAGGAGGAGGGGCGCGGTGTCACCGGCGACGTCGGTGGAGTCTATATCGACGTCGGCCGCATCCCTGGCTAGCGGGGATGAAACATTCCGCGACCTTGACCTTGCGCTGGTGAATCTGGGCAAGCTGCTGTCGACCGTGGCTGCCAAGGGCGCCGAGCCAGGCAGCAGCTACCGAAAAAGGCTTCGAGAAGGAGCCGCTATGGTTAAGACGAGGCTGATCCCCACTATGTCTAAGCTGTATAACTTGGTGGCGAGCCGGGAAGGGGATAAAAAAGGTCTCGTCGCGCAGCTTGACCCCAGGGAGAAGGCGATGGACACCGACGTGCCCTCGCGGGCCGCGAAGAGTGTGCCGGCACCCATGCCAGTGCCCACCCCTGTGGCCTCTATTCCTCGAGCACCTACGTCTGCGCTTTCTCGCCCCCCGCGGAGGGTTGAGTTAAGGCCTGCGCTGCCTCCCCGGATATCGGCCGCCCCTGCATCCGTGCAGAGAGGAGTGCAACGGCCTGCGCCAGCACAAACGGAGGACATCCGTTCGCCACTGGCGAGGATGGTGGACGAGTGGCCAGCACTGCCGCGGCCCAGATCTACAGAGCCGTCTCTTTCGGCCCCGCGTGCCGTGGGGCCACAGAGTCCACACTACGTGGCTGCTGGTATGCGGGAGGTGAACAATTCCCTCCCAAGCAAAGAGGAAATGGTGGCCTGCATTTCGCGGGCGGTGGCAGTAGAGGTCGGAAAGCACTTTGCCAGCCTTGAGGAGATGCTCCGCTCCTCGGTTGATTCCGGAGTCTGCGTCCTGGCGCCAAAAGCCGCAGCCGCCCCGCGCGACCAATCCACTCGGCCGACCTCTGCCTTTACCCCCTCTGCGAGGGTGGTACAGCGTGGAGGCCGAAACCAGAACAGTAGGGCTGCGGGTGCTCCGCGATCCCAACCACAGTCTCGTTCCCTTCCTCCTCCTCCGTCAAACATGGACGAGGGCTGGACGGAAGTGAGCACCGGCCGCCAGCAAGAAGAAAAGAGAAAGGAAGAAGCCGTCGTAGTGACGTTGCTGCCGGCCGCCGCCGAAAAGGGCCTCACCTATGATGAGGTGATGGCCCGGGCGCGCGCGGCCGTAAATTTGGAAGAAATCGGGGCGGAGGAGGGTCTGCGCTTCCGGCATACCGCCAATGGGGCGAAGCTGCTGGAGTGTCCCGGTGCCAATAGTTCTGGCATCGCAGACAAACTAGTAGCGACGCTCCGCGTGGCACTGCCGGAGGAAGACGTGCGCGTGCACAGGCCGGTGAGGATGGCTGAGATTAGGATCACCGGCCTGGACGATTGCGCCACCAGGGAGGAGGTGGCAGCTGCGATAGCCGCCCAAGGTGGATGTGCCCCGGAGAGCGTGACCGTGGGTGAACTCCGCTCAGGGTACTCCGGGGCCAGGTCGGCGTGGGCGCGCTGCCCTGTGGAGGCTGCCACCTTCTTAGCCACTCCTCCGCCGGGAAGATCGACGGGGGATCCGGGGAGACTGCGCGTGGGCTGGATAGCGGCCCACGTGCGTCTCCAAGAACCGCGTGCCTGGCGATGCCTTCGGTGCTTTAGTACCAGACACGGCCTCGCCAGGTGCACCAGCTCGATTGACCGCAGTGGTCTGTGTTTCCGCTGCGGCCAGCCAGGCCATAAAGCGGCTTCCTGCACGGCCGCCCCGCACTGCGCTCTGTGCGCTGCGGCCGGGCGCAGGGCAAACCACCGGGCGGGAGGCAAGGCGTGTTTCCCGTCCGGTGATAACACCGAACGAAACCGGCGCCGGAAATCAAAGCGCCGGCAAAAGAGAAGGTTGGCCAGAGGAGCACTGGCCAACGTTGTAATCCCCGTTGCGGCGCCGGTGCCGGAGAGCGGGGGCAGCGGAAACCTGAACCACTCCGCCAGAGCTCAGGACATGCTGTCTCAGAGCATGGCGGAGTGGTCCATAGATGTGGCTGTGGTCGCCGAGCCGTATTTCGTTCCCCCAGCAAATGATTGCTGGTTTGGGGACGACGGCGGCTTGGCGGCCATAGTCATAAGAAGAGACGCGGCGATCCCCCCCCTGGCGATGGTGACCAGGGGTCAAGGGTTCGTCGCGGTGCAGCTGGAAGGGACCGTCGTGATCGGGGCGTACTTCTCTCCGAACAGGCCTACCGTCGAGTTCGGACATTTCCTGGACGGGATCGGGGCGATTGCTCGCCGCCTCGCTCCCCGTCCAGTGATTCTTGCGGGGGATCTTAATGCGAAATCTGTCGCATGGGGCTCCCCCCGCTCGAACGCTCGTGGTAGGCTACTGGAGAGGTGGGCGAACGCGGCCGGCCTCTGTTTATTGAATAGAGGTACGGTTGCGACGTGCGTGCGGTGGCAGGGCGAGTCTATTGTGGACGTTACGTTTGCGAGCCCGGCCATCGCGCGCCGTATCCGCGACTGGAGGGTTTTGGAGGGGGCGGAGACACTGTCAGATCACCGATATATTCGGTTCGATCTCTCCGCCCGCTCCACAGTCGCGGACGCCCGCGGGGGCCATCCCCGTGACGCGTCTCGATCATTCCCTAGGTGGGCATTGAAGCGCCTGAATAAGGAGCTCCTGATGGAAGCCTCTACAGTGGCGGCGTGGACGCCCATGCGTCCACACCCGGTCGAGGTCGAGGGCGAGGCGGGGTGGTTCCGGGACACGATGCGTCGCATCTGTGATGTGTCGATGCCCCGGATCGGCCCTCGACTTCCCAATCGCCAGGCGTACTGGTGGTCGCCTGAAATCGCGCAACTCCGCGTGGAGTGCGTTCGGGCGAGGCGCGAGTGCGCCAGGCATCGCCGCCGCCACCTGCCGCGGCGCAACGATCCGGTTGCGTTCGCGGCAGTGGAGGCTCGGCTGCACGGCGCATTTCGCGTCGCGCAGAGAGCGCTGCAGCTGGCCATCAGAAGAGCCAAGGACCGACACATGGAGGGTCTCTTGGAGACGCTGAATGAGGATCCGTGGGGGCGGCCCTATCATATGGTGCGCAATAAAATGCGCCCATGGGCCCCCCCGATCACGGAGCGTCTCCAGCCTCAGCAGCTGCGGGACATCGTCTCGGCGCTGTTCCCGCAGGAGCGGGAGGGATTTGTCGCTCCCGCTATGGACGCGCCGCCGGAATACGACGGTGAAGTCCCTGCTGAGGTGCCCCATATAACGGGGGCGGAGCTCCGTGTGGCCGTGCGCAAAATGTGCACGAAGGACACTGCACCCGGCCCGGACGGCGTCCATGGCCGGACTCGTGCTGTTGAGAAAGGAGGGGCGCCCATCGAGGGGTACCGTCCCATCGTGTTGCTGGATGAGGTGGGCAAGCTGCTGGAACGTATTCTGGCGGCCCGCATCATCCAGCATCTGGTCGGGGTGGGACCCGATCTGTCGGCGGAACAGTATGGCTTCCGAGAGGGCCGCTCAACGGTGGACGCGATCCTTCGCGTGCGGGCCCTCTCGGAGGAGGCCATCTCCAGGGGCGGGGTGGCTTTGGCGGTGTCACTCGATATCGCCAATGCATTTAACACCCTGCCCTGGTCCGTGATAGGGGCGGCGCTAGAAAGACACGGAGTGCCCCCCTACCTTCGCCGGCTGGTGGGTTCCTACTTGGAAGACAGATCGGTCACATGTACCGGACACGGTGGGATCGTGCACCGGTTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTGCTCGGCCCTCTTTTGTGGAATATCGGGTATGACTGGGTGCTGAGGGGTGCCCTCCTCCCGGGCCTGAGCGTAATCTGTTACGCAGACGACACGTTGGTCGTGGCCCGGGGAGGGAGTTTTGCTGAGTCTGCCCGTCTTGCCACCGCTGGGGTGGCGCATGTCGTCGGCAAAATCAGGAGATTGGGCCTCGACGTGGCGCTCAGTAAATCCGAGGCCATGTGGTTTCACAGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGGATTGGGGTCGGGGTGCAGCTGAAGTATCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGAACCTGGTCCCTCGTTTGTTGGGGGCGGCCGGCGCGTTAAGCCGGCTTCTGCCCAACATCGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACAGGAGTGGTGCGATCAATGGCCCTATACGGGGCGCCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTGGCGAGGCTGCTGCAAAAGCCGCAACGCACCATCGCGGTCAGGGTCATTCGTGGTTATCGCACCATCTCCTTCGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTTCTGGAAGCGGAGGCGCTCGCCGCTGACTATCAGTGGCGGGCTGACCTTCGTGCCCGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAATCATGGTCCAGGCGGCTGGCCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCACCCAGTCCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTTCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCAGAGCCGAGCCGACGGCAGAGTGCCACCATTGTGATTGCGACTTGGACACGGCAGAGCATACGCTCGTCGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAAACGACTTGTCGTTACCGAGTGTTGTGGCATCGATGCTCGGCGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTTAGAGACGCGCAAGCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATTTCGCCCAAGCCCTGGCCCTCTAA
Protein
MRSALASDSGAINPTRSSAGKKRRRKKTPLQTSDDGGASSSSIEVPEKTMAVEEVVPVVSGPATSEDMMPAPQWAPVRRRGAVSPATSVESISTSAASLASGDETFRDLDLALVNLGKLLSTVAAKGAEPGSSYRKRLREGAAMVKTRLIPTMSKLYNLVASREGDKKGLVAQLDPREKAMDTDVPSRAAKSVPAPMPVPTPVASIPRAPTSALSRPPRRVELRPALPPRISAAPASVQRGVQRPAPAQTEDIRSPLARMVDEWPALPRPRSTEPSLSAPRAVGPQSPHYVAAGMREVNNSLPSKEEMVACISRAVAVEVGKHFASLEEMLRSSVDSGVCVLAPKAAAAPRDQSTRPTSAFTPSARVVQRGGRNQNSRAAGAPRSQPQSRSLPPPPSNMDEGWTEVSTGRQQEEKRKEEAVVVTLLPAAAEKGLTYDEVMARARAAVNLEEIGAEEGLRFRHTANGAKLLECPGANSSGIADKLVATLRVALPEEDVRVHRPVRMAEIRITGLDDCATREEVAAAIAAQGGCAPESVTVGELRSGYSGARSAWARCPVEAATFLATPPPGRSTGDPGRLRVGWIAAHVRLQEPRAWRCLRCFSTRHGLARCTSSIDRSGLCFRCGQPGHKAASCTAAPHCALCAAAGRRANHRAGGKACFPSGDNTERNRRRKSKRRQKRRLARGALANVVIPVAAPVPESGGSGNLNHSARAQDMLSQSMAEWSIDVAVVAEPYFVPPANDCWFGDDGGLAAIVIRRDAAIPPLAMVTRGQGFVAVQLEGTVVIGAYFSPNRPTVEFGHFLDGIGAIARRLAPRPVILAGDLNAKSVAWGSPRSNARGRLLERWANAAGLCLLNRGTVATCVRWQGESIVDVTFASPAIARRIRDWRVLEGAETLSDHRYIRFDLSARSTVADARGGHPRDASRSFPRWALKRLNKELLMEASTVAAWTPMRPHPVEVEGEAGWFRDTMRRICDVSMPRIGPRLPNRQAYWWSPEIAQLRVECVRARRECARHRRRHLPRRNDPVAFAAVEARLHGAFRVAQRALQLAIRRAKDRHMEGLLETLNEDPWGRPYHMVRNKMRPWAPPITERLQPQQLRDIVSALFPQEREGFVAPAMDAPPEYDGEVPAEVPHITGAELRVAVRKMCTKDTAPGPDGVHGRTRAVEKGGAPIEGYRPIVLLDEVGKLLERILAARIIQHLVGVGPDLSAEQYGFREGRSTVDAILRVRALSEEAISRGGVALAVSLDIANAFNTLPWSVIGAALERHGVPPYLRRLVGSYLEDRSVTCTGHGGIVHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGSFAESARLATAGVAHVVGKIRRLGLDVALSKSEAMWFHRPRRVPPVDAHIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQNLVPRLLGAAGALSRLLPNIGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVARLLQKPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRADLRARGVARPSPSVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIHPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIRAEPTAECHHCDCDLDTAEHTLVACPAWEGWRRVLVAKIGNDLSLPSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAGAREADFAQALAL

Summary

Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
Gene 3D
ProteinModelPortal
PDB
1WDU     E-value=1.03996e-10,     Score=166

Ontologies

Topology

Length:
1718
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.20014
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00006
outside
1  -  1718
 
 

Population Genetic Test Statistics

Pi
12.347906
Theta
123.204241
Tajima's D
1.364619
CLR
0.336913
CSRT
0.752062396880156
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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